FvH4_6g49450

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000472
Physical Location & Seq
Forward (+)
37041861 .. 37049758
7898 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49450.t1

Sequence Viewer

Length: 4440 bp
ATGTATATAAATGTATACACAGTTACACACACACACACGTCAAATGTAAGCACCCACTTACATTACATCATAGTAGGAATCAAAAGAGGGGTACTGAAGAGTGCCTTAGAAGTTGGAACAATGGACTTGGCTGCAGAGATAGGAAGAAGTGTCAGGACCTCGTTTCGCGAGCATGCTGATAGTTTCAGGAGCACTACAGATGTAAGGTCCATGAAGAAGAATGAAGACGATGAAGTTGAGTTGCAGTGGGCCACCATTGACAGGTTGCCAACGTTTGAGCGCATTAGGACTTCGTTGTTTGATTACAGCAAAGATGAGAATAAGGAAGATGAGGCTAGTAACAAGAGTAAGATGGTACCGATTGATGTGTCAAAGCTAGGATCACCGGAGAGACATGTGGTCATTGAAAAACTGATCAAGGAAATTGAGGGAGATAACCACCGGCTCTTGCAGAAACTCAGAGAAAGAATAGACAGAGTGGGACTGCAACTGCCGACAGTGGAAGTTCGATACCAAAATCTGTTTGTAGAAGCAGAATGTGAAGTTGTTCAAGGAAAACCCCTCCCAACACTATGGAATACCATTAAAAGCTTATTTTCTGTTATGACACAGATAGTTGGGTGCAAGCCTCAAGCATACAAGCTTGAAATTGTCAAAGATGTCAGCGGCATCATCAAGCCATCAAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAATCCACTTTCTTGCAGGCGCTTGCAGGAAAACTGAACCATTCTCTCAAGGTCAGGGGAGATGTAACCTACAATGGTTATAAGCTCAATGAGTTTGTTCCACAGAAGACATCAGCTTATATAAGTCAATATGATTTGCACATTTCTGAAATGACTGTGAGGGAAGTACTGGATTTCGCAGCGTGCTGTCAGGGTATTGGAAGCAGAGCAGATATAATGAAAGAAGTCACCAGAAGGGAGAAGCAAGAAGGAATTGTCCCAGATTCAGATGTTGACACCTATATGAAGGCCATTTCCATAGAAGGGTTGAAAAAATCTCTCATGACAGACTACATAATAAAGATCCTTGGGCTAGACATTTGTGCTGAGACAATTGTAGGGGATCCAATGCAAAGAGGAATTTCAGGTGGCCAAAAGAAAAGGTTAACAACAGGGGAAATGATGATTGGTCCAGCAAGAGCTTTCTTTATGGATGAGATATCGACAGGCTTAGACAGTTCCACCACCTTCCAAATCATCACTTGTCTTCAGCAATTAACACACTTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACCTTTCAACTTTTTGATGACATTATCTTAATGGCAGAAGGAAAAGTTGTATACCATGGGCCTACTGATAATGTGGCAGAGTTCTTTGAGAACTGTGGTTTTCGTAACCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCAAAGAAGGATCAAGCAAAGTACTGGTACTATGAGGACCAACCCCATAATTATGTTACTGTCAACAGCTTTGTAAATATGTTCAAGGACTTCCATGTTGGAAAGAAGCTAGATGAGGAACTTCGAGAGCCTTTCAATCGATCTGAGTTTCATAAAGATGCTTTGTCATCCAATACTTACTCACTGAGAAAGTGGGAACTCTTCAAAGCATGCCTCGCTAGAGAATGGCTTCTAATGAAGCGCAACTCATTTGTCCATGTATTCAAATCGGGACAGCTTGTGGTCATTGCGCTTGTAACAATGACAGTGTTTCTTCGTACATGGATGAAAGTCGATGAGATCCATTCTGAGTTCTTTATGAGCTCTTTGTTTTATGCTCTACTTAGATTGGTGTGCAATGGCACTGCAGAGTTATCAATGACTGCTTCTAGACTTGCAGTGTTCTACAAGCAAAGAGACTTCTATTTCTATCCTGCATGGGCTTATTCGATTCCATCTGCCATCTTAAAGATTCCATTTTCATTGATAGATGCTTTTCTATGGACAGCACTCACTTATTATGTCATCGGTTACAGTCCTGAACCCAATAGGTTCTTCAAGCAATTCATTGTTTTATTCCTCGTCCATCAAGTAGCAATATCACTGTTTCGTTTGATTGCATCCTTGGTTCGAAATCCTTCTCTTGCAGCCCCTGTTGGTCTTTTCTCCTTAATTGTCATGTTTCTATTTGGCGGTTTCATAATTCCAAAAACTTCTCTACCTAGCTGGTTGGAATGGGGCTTTTGGCTTTCCCCATTGGTATATGCAGAGATTGGTGCTACAGGAAATGAGTTCCATGCTCCAAGGTGGCAAAAGTTTTCAACTTCAAATATCACAATAGGCCAGCTAGCTCTAAAAGATCGTGGTCTTGATTTCAGTGAATACTTCTATTGGATATCTATAGGAGCTTTACTTGGATTTTGGTTGATTTTTAACCTAGGGTTCACCTGTGCTCTCAGTTATTTAAAGTCTCCAGAGAGTTCTCGAACTATCATTTCTCATGAAAGGTTGTCTCGTCTAAAAGAAAAGGAAAGTCTGAACAATTCCCATCAAGGAAAAAGATTAACTCGTATAGAAACTCGAATAAGAGTTGAAGATTCTACAAACATGGGGGTCTTACCTTTTGAGCCCATGACTATATCATTTGAGAAAGTGCAATATTTTGTTGACACACCCCAGAAACTGAGAGAGCAAGGTTTTCCACCAAAACGACTACAACTTCTTCAAGATATAACTGGTGCTTTTAGACCTGGAGTTCTTACAGCACTGATGGGCGTTAGTGGAGCTGGAAAGACAACACTCATGGATGTTCTTTCAGGAAGGAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGATACCCAAAAGTTCAAGAAACATATGCCAGAATATCGGGGTATTGCGAACAAAGTGACATACATTCCCCCCAGATAACAGTAGAAGAGTCAGTAACATACTCAGCTTGGTTACGTTTGCCATCACAAATTGATAGAACAATCAGATCTGAATTTGTGAGAGAAGTTCTACAAATGATTGAGCTTGACGAAATCAAGGATGAACTGGTAGGCATACCTGGTAGGGGTATATCGACTGAACAGCGCAAACGGCTTACTATAGCAGTGGAGCTTGTTTCAAATCCCTCCATAATATTCATGGACGAACCCACCTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTTATGCGAGTGGTCAAAAACATTGTCAGCACCAGGAGGACTGTTGTATGCACCATTCACCAACCCAGTATTGACATCTTTGAATCATTTGATGAGCTTATTTTAATGAAAAGAGGAGGACAGCTAATCTACAGTGGAGAGCTCGGTCAAAATTCAAGCAAGCTTATTGAATACTTTGAGGGTATCCCTGGGGTTCCAAAAATCAAAGAAAATTACAACCCTGCAACATGGATGTTAGATGTCACTGGTCCTTCTGTAGAAGTTAAACTTGGCTTAGATTTTGCTCAACTCTATAGAGAATCACATATATGCCGGAAGAACAACGACCTAGTTATGGAACTCAGCTGTCCAGCAGAAGGGGCAAAGAAACTACATTTTTCTACTCGCTTTGCTCAAAATGAATGGGAGCAATTTAAAGCCTGCCTCTGGAAGCAACATCTCTCCTACTGGAGAAATCCGCAATATAACCTAGGGAGATTGACAATTACTGCTGCATCTTCTATGTTATTTGGAGCACTTCTTTGGGAGAAAGGGCAGACAATAGATAATGAACAGGATTTTTTCAACATTCTAGGATCAATGTTTGTTTTACTGCAATTCATGGGAATAGGAAACTGCTCCTCTGTTCTACCCTGCATTGCTTCAGAGCGGAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCCTATTCATTTGCGCAGGTGATTATTGAAATACCATACATATTTGTTCAGGCAGTTTTGTTTTCGGCAATCACTTATCCAACAATAAGTTTCCACTGGACACTTTACCAAGTGTTTTGGTATGTATATGCCATGTTTTGTACACTGCTATACTTCAGTTACTTCGGCATACTGCTTGCAGCTTTGACCCCAACATTCCAAGTGGCTATGGTCCTAGCCAGTTTCTGTTACACCATGTTCAACTTATTCTCAGGTTTCCTTGTTCCTGGACCGAAAATCCCTAAATGGTGGGTCTGGGGTTATTGGATTTGCCCTGTAGCATGGTCCTTAAACGGTCTTCTCACTTCACAGTATGGAGATCTAAACAAGGTGATAGTAGTACATGGGGAGGAAAAGACCATCAGTGCCTTCTTAGAAAGTATTCATGGGTATTACTATGATGAACTAAAATATGTAGCAATTGTTCTTTTCGCATTTCCACTAGTTTTTGCTTTTGCTTTTGGAGTTGCTACTGAGAAACTAAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1480

Amino Acids

168.58

Weight (kDa)

7.71

Isoelectric Point (pI)

37.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 218 - 399 9.1e-14 ABC transporter
ABC2_membrane_7 PF19055 433 - 511 6.8e-07 ABC-2 type transporter
ABC2_membrane PF01061 554 - 765 9e-44 ABC-2 type transporter
PDR_assoc PF08370 770 - 832 1.7e-21 Plant PDR ABC transporter associated
ABC_tran PF00005 908 - 1059 4.3e-19 ABC transporter
ABC2_membrane PF01061 1204 - 1418 1.2e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AarI CACCTGC 1 cut(s) 3907
Acc16I TGCGCA 1 cut(s) 3915
Acc36I ACCTGC 1 cut(s) 3907
Acc65I GGTACC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 355
AccB7I CCANNNNNTGG 2 cut(s) 716, 1456
AccBSI CCGCTC 1 cut(s) 3853
AccI GTMKAC 3 cut(s) 15, 1362, 3864
AccII CGCG 1 cut(s) 168
AciI CCGC 4 cut(s) 666, 2193, 3662, 3853
AclI AACGTT 1 cut(s) 272
AclWI GGATC 7 cut(s) 388, 1057, 1097, 1110, 1479, 1795, 3787
AcoI YGGCCR 1 cut(s) 1129
AcsI RAATTY 3 cut(s) 1119, 3014, 3355
AcuI CTGAAG 5 cut(s) 116, 1232, 1280, 3831, 4039
AfaI GTAC 9 cut(s) 93, 357, 888, 1484, 1490, 1780, 3890, 4042, 4281
AflIII ACRYGT 2 cut(s) 36, 394
AhdI GACNNNNNGTC 1 cut(s) 398
AhlI ACTAGT 1 cut(s) 4381
AjiI CACGTC 1 cut(s) 39
AjnI CCWGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
AjuI GAANNNNNNNTTGG 6 cut(s) 1149, 1181, 2039, 2071, 3456, 3488
Alw21I GWGCWC 5 cut(s) 194, 1826, 2455, 3348, 3721
Alw26I GTCTC 7 cut(s) 385, 1082, 1304, 1911, 2475, 2517, 2841
AlwI GGATC 7 cut(s) 388, 1057, 1097, 1110, 1479, 1795, 3787
AlwNI CAGNNNCTG 3 cut(s) 2153, 2683, 4125
AoxI GGCC 7 cut(s) 249, 703, 1008, 1129, 1370, 2341, 3900
ApeKI GCWGC 7 cut(s) 131, 899, 2147, 3194, 3197, 3695, 4079
ApoI RAATTY 3 cut(s) 1119, 3014, 3355
ArsI GACNNNNNNTTYG 2 cut(s) 3213, 3245
Asp700I GAANNNNTTC 4 cut(s) 546, 1689, 2137, 4320
Asp718I GGTACC 1 cut(s) 355
AspA2I CCTAGG 2 cut(s) 2437, 3673
AspLEI GCGC 6 cut(s) 282, 742, 1704, 1753, 3108, 3916
AsuHPI GGTGA 6 cut(s) 375, 940, 2437, 3254, 3931, 4282
AsuII TTCGAA 1 cut(s) 2131
AsuNHI GCTAGC 1 cut(s) 2347
AvaII GGWCC 8 cut(s) 156, 207, 1169, 1498, 3452, 4111, 4169, 4224
AvrII CCTAGG 2 cut(s) 2437, 3673
BalI TGGCCA 1 cut(s) 1131
BamHI GGATCC 1 cut(s) 1102
BanI GGYRCC 1 cut(s) 355
BanII GRGCYC 3 cut(s) 1826, 2631, 3348
BbsI GAAGAC 4 cut(s) 231, 833, 1238, 4229
Bbv12I GWGCWC 5 cut(s) 194, 1826, 2455, 3348, 3721
BbvI GCAGC 7 cut(s) 118, 911, 2159, 3184, 3206, 3682, 4091
BccI CCATC 9 cut(s) 346, 688, 1963, 1970, 2094, 2556, 2764, 2992, 4307
BceAI ACGGC 1 cut(s) 3128
BciT130I CCWGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
BciVI GTATCC 2 cut(s) 2858, 3398
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 7 cut(s) 385, 1082, 1304, 1911, 2475, 2517, 2841
BcuI ACTAGT 1 cut(s) 4381
BfoI RGCGCY 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 3907
BfuI GTATCC 2 cut(s) 2858, 3398
BglI GCCNNNNNGGC 1 cut(s) 711
BglII AGATCT 2 cut(s) 3008, 4258
BisI GCNGC 8 cut(s) 132, 667, 900, 2148, 3195, 3198, 3696, 4080
BlnI CCTAGG 2 cut(s) 2437, 3673
BlsI GCNGC 8 cut(s) 133, 668, 901, 2149, 3196, 3199, 3697, 4081
BmcAI AGTACT 2 cut(s) 888, 1484
Bme1390I CCNGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
Bme18I GGWCC 8 cut(s) 156, 207, 1169, 1498, 3452, 4111, 4169, 4224
BmeRI GACNNNNNGTC 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 39
BmiI GGNNCC 3 cut(s) 357, 1104, 3399
BmrFI CCNGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
BmrI ACTGGG 1 cut(s) 3264
BmsI GCATC 6 cut(s) 678, 1609, 1981, 2129, 3175, 3707
BmtI GCTAGC 1 cut(s) 2351
BmuI ACTGGG 1 cut(s) 3264
BpiI GAAGAC 4 cut(s) 231, 833, 1238, 4229
BpmI CTGGAG 4 cut(s) 693, 2457, 2772, 3673
Bpu14I TTCGAA 1 cut(s) 2131
BpuEI CTTGAG 2 cut(s) 615, 752
Bsa29I ATCGAT 1 cut(s) 1600
BsaI GGTCTC 1 cut(s) 1304
BsaJI CCNNGG 8 cut(s) 1066, 1366, 2124, 2303, 2437, 3391, 3392, 3673
BsaWI WCCGGW 1 cut(s) 385
Bse118I RCCGGY 1 cut(s) 441
Bse3DI GCAATG 3 cut(s) 1746, 1864, 3840
BseBI CCWGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
BseCI ATCGAT 1 cut(s) 1600
BseDI CCNNGG 8 cut(s) 1066, 1366, 2124, 2303, 2437, 3391, 3392, 3673
BseGI GGATG 8 cut(s) 693, 1198, 1628, 1791, 2120, 2812, 3067, 3441
BseMI GCAATG 3 cut(s) 1746, 1864, 3840
BseRI GAGGAG 3 cut(s) 3333, 3814, 3883
BseXI GCAGC 7 cut(s) 118, 911, 2159, 3184, 3206, 3682, 4091
Bsh1236I CGCG 1 cut(s) 168
BshFI GGCC 7 cut(s) 251, 705, 1010, 1131, 1372, 2343, 3902
BshNI GGYRCC 1 cut(s) 355
BshVI ATCGAT 1 cut(s) 1600
BsiHKAI GWGCWC 5 cut(s) 194, 1826, 2455, 3348, 3721
BsiSI CCGG 3 cut(s) 386, 442, 3517
BslFI GGGAC 3 cut(s) 495, 962, 1746
BsmAI GTCTC 7 cut(s) 385, 1082, 1304, 1911, 2475, 2517, 2841
BsmFI GGGAC 3 cut(s) 495, 962, 1746
BsnI GGCC 7 cut(s) 251, 705, 1010, 1131, 1372, 2343, 3902
Bso31I GGTCTC 1 cut(s) 1304
Bsp119I TTCGAA 1 cut(s) 2131
Bsp1286I GDGCHC 6 cut(s) 194, 1826, 2455, 2631, 3348, 3721
Bsp1407I TGTACA 1 cut(s) 4040
Bsp19I CCATGG 1 cut(s) 1366
Bsp68I TCGCGA 1 cut(s) 168
BspACI CCGC 4 cut(s) 666, 2193, 3662, 3853
BspANI GGCC 7 cut(s) 251, 705, 1010, 1131, 1372, 2343, 3902
BspDI ATCGAT 1 cut(s) 1600
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 2 cut(s) 1041, 2500
BspLI GGNNCC 3 cut(s) 357, 1104, 3399
BspMAI CTGCAG 2 cut(s) 136, 1870
BspMI ACCTGC 1 cut(s) 3907
BspOI GCTAGC 1 cut(s) 2351
BspPI GGATC 7 cut(s) 388, 1057, 1097, 1110, 1479, 1795, 3787
BspT104I TTCGAA 1 cut(s) 2131
BspT107I GGYRCC 1 cut(s) 355
BspTNI GGTCTC 1 cut(s) 1304
BsrBI CCGCTC 1 cut(s) 3853
BsrDI GCAATG 3 cut(s) 1746, 1864, 3840
BsrFI RCCGGY 1 cut(s) 441
BsrGI TGTACA 1 cut(s) 4040
BssAI RCCGGY 1 cut(s) 441
BssECI CCNNGG 8 cut(s) 1066, 1366, 2124, 2303, 2437, 3391, 3392, 3673
BssNAI GTATAC 3 cut(s) 16, 1363, 3865
BssT1I CCWWGG 6 cut(s) 1066, 1366, 2124, 2303, 2437, 3673
Bst1107I GTATAC 3 cut(s) 16, 1363, 3865
Bst2UI CCWGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
Bst6I CTCTTC 3 cut(s) 92, 1667, 2943
BstAUI TGTACA 1 cut(s) 4040
BstBI TTCGAA 1 cut(s) 2131
BstDSI CCRYGG 1 cut(s) 1366
BstENI CCTNNNNNAGG 1 cut(s) 1451
BstF5I GGATG 8 cut(s) 693, 1198, 1628, 1791, 2120, 2812, 3067, 3441
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 743
BstHHI GCGC 6 cut(s) 282, 742, 1704, 1753, 3108, 3916
BstMAI GTCTC 7 cut(s) 385, 1082, 1304, 1911, 2475, 2517, 2841
BstMWI GCNNNNNNNGC 5 cut(s) 711, 1676, 3112, 3194, 3563
BstNI CCWGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
BstNSI RCATGY 3 cut(s) 176, 398, 1674
BstSCI CCNGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 7 cut(s) 118, 911, 2159, 3184, 3206, 3682, 4091
BstV2I GAAGAC 4 cut(s) 231, 833, 1238, 4229
BstX2I RGATCY 5 cut(s) 1062, 1102, 1800, 3008, 4258
BstXI CCANNNNNNTGG 2 cut(s) 573, 1282
BstYI RGATCY 5 cut(s) 1062, 1102, 1800, 3008, 4258
BstZ17I GTATAC 3 cut(s) 16, 1363, 3865
Bsu15I ATCGAT 1 cut(s) 1600
BsuI GTATCC 2 cut(s) 2858, 3398
BsuRI GGCC 7 cut(s) 251, 705, 1010, 1131, 1372, 2343, 3902
BsuTUI ATCGAT 1 cut(s) 1600
BtgI CCRYGG 1 cut(s) 1366
BtrI CACGTC 1 cut(s) 39
BtsCI GGATG 8 cut(s) 693, 1198, 1628, 1791, 2120, 2812, 3067, 3441
BtsI GCAGTG 5 cut(s) 251, 1863, 1905, 3132, 4043
BtuMI TCGCGA 1 cut(s) 168
BveI ACCTGC 1 cut(s) 3907
CaiI CAGNNNCTG 3 cut(s) 2153, 2683, 4125
CciI TCATGA 2 cut(s) 1041, 2500
CfoI GCGC 6 cut(s) 282, 742, 1704, 1753, 3108, 3916
Cfr10I RCCGGY 1 cut(s) 441
ClaI ATCGAT 1 cut(s) 1600
CsiI ACCWGGT 1 cut(s) 3079
Csp6I GTAC 9 cut(s) 92, 356, 887, 1483, 1489, 1779, 3889, 4041, 4280
CviQI GTAC 9 cut(s) 92, 356, 887, 1483, 1489, 1779, 3889, 4041, 4280
DraI TTTAAA 2 cut(s) 2466, 3619
DriI GACNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 1129
Eam1104I CTCTTC 3 cut(s) 92, 1667, 2943
Eam1105I GACNNNNNGTC 1 cut(s) 398
EarI CTCTTC 3 cut(s) 92, 1667, 2943
Ecl136II GAGCTC 2 cut(s) 1824, 3346
Eco130I CCWWGG 6 cut(s) 1066, 1366, 2124, 2303, 2437, 3673
Eco24I GRGCYC 3 cut(s) 1826, 2631, 3348
Eco31I GGTCTC 1 cut(s) 1304
Eco32I GATATC 2 cut(s) 1200, 2397
Eco47I GGWCC 8 cut(s) 156, 207, 1169, 1498, 3452, 4111, 4169, 4224
Eco53kI GAGCTC 2 cut(s) 1824, 3346
Eco57I CTGAAG 5 cut(s) 116, 1232, 1280, 3831, 4039
EcoICRI GAGCTC 2 cut(s) 1824, 3346
EcoNI CCTNNNNNAGG 1 cut(s) 1451
EcoO109I RGGNCCY 1 cut(s) 156
EcoRII CCWGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
EcoRV GATATC 2 cut(s) 1200, 2397
EcoT14I CCWWGG 6 cut(s) 1066, 1366, 2124, 2303, 2437, 3673
EcoT38I GRGCYC 3 cut(s) 1826, 2631, 3348
ErhI CCWWGG 6 cut(s) 1066, 1366, 2124, 2303, 2437, 3673
FalI AAGNNNNNCTT 4 cut(s) 89, 121, 3456, 3488
FaqI GGGAC 3 cut(s) 495, 962, 1746
FauNDI CATATG 1 cut(s) 2887
FbaI TGATCA 1 cut(s) 414
FblI GTMKAC 3 cut(s) 15, 1362, 3864
Fnu4HI GCNGC 8 cut(s) 132, 667, 900, 2148, 3195, 3198, 3696, 4080
FokI GGATG 8 cut(s) 700, 1205, 1615, 1798, 2107, 2819, 3074, 3448
FriOI GRGCYC 3 cut(s) 1826, 2631, 3348
Fsp4HI GCNGC 8 cut(s) 132, 667, 900, 2148, 3195, 3198, 3696, 4080
FspI TGCGCA 1 cut(s) 3915
GlaI GCGC 6 cut(s) 281, 741, 1703, 1752, 3107, 3915
GluI GCNGC 8 cut(s) 132, 667, 900, 2148, 3195, 3198, 3696, 4080
GsuI CTGGAG 4 cut(s) 693, 2457, 2772, 3673
HaeII RGCGCY 1 cut(s) 743
HaeIII GGCC 7 cut(s) 251, 705, 1010, 1131, 1372, 2343, 3902
HapII CCGG 3 cut(s) 386, 442, 3517
HhaI GCGC 6 cut(s) 282, 742, 1704, 1753, 3108, 3916
Hin6I GCGC 6 cut(s) 280, 740, 1702, 1751, 3106, 3914
HinP1I GCGC 6 cut(s) 280, 740, 1702, 1751, 3106, 3914
HincII GTYRAC 4 cut(s) 994, 1146, 1525, 2668
HindII GTYRAC 4 cut(s) 994, 1146, 1525, 2668
HindIII AAGCTT 3 cut(s) 589, 641, 3365
HpaI GTTAAC 1 cut(s) 1146
HpaII CCGG 3 cut(s) 386, 442, 3517
HphI GGTGA 6 cut(s) 375, 940, 2437, 3254, 3931, 4282
Hpy166II GTNNAC 9 cut(s) 16, 994, 1146, 1363, 1525, 2445, 2668, 3865, 4043
Hpy8I GTNNAC 9 cut(s) 16, 994, 1146, 1363, 1525, 2445, 2668, 3865, 4043
HpyCH4IV ACGT 3 cut(s) 38, 272, 2977
HpyF10VI GCNNNNNNNGC 5 cut(s) 711, 1676, 3112, 3194, 3563
HpySE526I ACGT 3 cut(s) 38, 272, 2977
HspAI GCGC 6 cut(s) 280, 740, 1702, 1751, 3106, 3914
KpnI GGTACC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 414
KspAI GTTAAC 1 cut(s) 1146
LmnI GCTCC 8 cut(s) 189, 2305, 2405, 2783, 3130, 3610, 3716, 3827
Lsp1109I GCAGC 7 cut(s) 118, 911, 2159, 3184, 3206, 3682, 4091
LweI GCATC 6 cut(s) 678, 1609, 1981, 2129, 3175, 3707
MabI ACCWGGT 1 cut(s) 3079
MaeII ACGT 3 cut(s) 38, 272, 2977
MbiI CCGCTC 1 cut(s) 3853
MfeI CAATTG 2 cut(s) 1092, 4359
MflI RGATCY 5 cut(s) 1062, 1102, 1800, 3008, 4258
MhlI GDGCHC 6 cut(s) 194, 1826, 2455, 2631, 3348, 3721
MlsI TGGCCA 1 cut(s) 1131
MluNI TGGCCA 1 cut(s) 1131
MlyI GAGTC 2 cut(s) 685, 2960
MmeI TCCRAC 4 cut(s) 94, 1540, 2211, 4004
Mox20I TGGCCA 1 cut(s) 1131
MroXI GAANNNNTTC 4 cut(s) 546, 1689, 2137, 4320
MscI TGGCCA 1 cut(s) 1131
MslI CAYNNNNRTG 4 cut(s) 1001, 1512, 1617, 3511
Msp20I TGGCCA 1 cut(s) 1131
MspA1I CMGCKG 3 cut(s) 666, 3197, 3549
MspI CCGG 3 cut(s) 386, 442, 3517
MspR9I CCNGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
MunI CAATTG 2 cut(s) 1092, 4359
MvaI CCWGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 5 cut(s) 711, 1676, 3112, 3194, 3563
NcoI CCATGG 1 cut(s) 1366
NdeI CATATG 1 cut(s) 2887
NheI GCTAGC 1 cut(s) 2347
NlaIV GGNNCC 3 cut(s) 357, 1104, 3399
NmuCI GTSAC 3 cut(s) 946, 2918, 3445
NruI TCGCGA 1 cut(s) 168
NsbI TGCGCA 1 cut(s) 3915
NspI RCATGY 3 cut(s) 176, 398, 1674
NspV TTCGAA 1 cut(s) 2131
PaeI GCATGC 2 cut(s) 176, 1674
PagI TCATGA 2 cut(s) 1041, 2500
PaqCI CACCTGC 1 cut(s) 3907
PasI CCCWGGG 1 cut(s) 3392
PciI ACATGT 1 cut(s) 394
PdmI GAANNNNTTC 4 cut(s) 546, 1689, 2137, 4320
PfeI GAWTC 8 cut(s) 78, 983, 1271, 1951, 1972, 2597, 3287, 3503
PflMI CCANNNNNTGG 2 cut(s) 716, 1456
PfoI TCCNGGA 1 cut(s) 4165
PkrI GCNGC 8 cut(s) 133, 668, 901, 2149, 3196, 3199, 3697, 4081
PleI GAGTC 2 cut(s) 685, 2959
PpsI GAGTC 2 cut(s) 685, 2959
PpuMI RGGWCCY 1 cut(s) 156
PscI ACATGT 1 cut(s) 394
PsiI TTATAA 1 cut(s) 801
Psp124BI GAGCTC 2 cut(s) 1826, 3348
Psp1406I AACGTT 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 156
Psp6I CCWGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
PspGI CCWGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
PspN4I GGNNCC 3 cut(s) 357, 1104, 3399
PspPPI RGGWCCY 1 cut(s) 156
PsrI GAACNNNNNNTAC 2 cut(s) 4347, 4379
PstI CTGCAG 2 cut(s) 136, 1870
PstNI CAGNNNCTG 3 cut(s) 2153, 2683, 4125
PsuI RGATCY 5 cut(s) 1062, 1102, 1800, 3008, 4258
PvuII CAGCTG 2 cut(s) 3197, 3549
RruI TCGCGA 1 cut(s) 168
RsaI GTAC 9 cut(s) 93, 357, 888, 1484, 1490, 1780, 3890, 4042, 4281
RsaNI GTAC 9 cut(s) 92, 356, 887, 1483, 1489, 1779, 3889, 4041, 4280
RseI CAYNNNNRTG 4 cut(s) 1001, 1512, 1617, 3511
SacI GAGCTC 2 cut(s) 1826, 3348
SatI GCNGC 8 cut(s) 132, 667, 900, 2148, 3195, 3198, 3696, 4080
ScaI AGTACT 2 cut(s) 888, 1484
SchI GAGTC 2 cut(s) 685, 2960
ScrFI CCNGG 6 cut(s) 711, 2751, 3081, 3238, 3393, 4167
SduI GDGCHC 6 cut(s) 194, 1826, 2455, 2631, 3348, 3721
SexAI ACCWGGT 1 cut(s) 3079
SfaNI GCATC 6 cut(s) 678, 1609, 1981, 2129, 3175, 3707
SfuI TTCGAA 1 cut(s) 2131
SinI GGWCC 8 cut(s) 156, 207, 1169, 1498, 3452, 4111, 4169, 4224
SmiMI CAYNNNNRTG 4 cut(s) 1001, 1512, 1617, 3511
SmlI CTYRAG 2 cut(s) 630, 767
SmoI CTYRAG 2 cut(s) 630, 767
SpeI ACTAGT 1 cut(s) 4381
SphI GCATGC 2 cut(s) 176, 1674
SsiI CCGC 4 cut(s) 666, 2193, 3662, 3853
SspI AATATT 2 cut(s) 2660, 3156
SstI GAGCTC 2 cut(s) 1826, 3348
StyD4I CCNGG 6 cut(s) 709, 2749, 3079, 3236, 3391, 4165
StyI CCWWGG 6 cut(s) 1066, 1366, 2124, 2303, 2437, 3673
TaiI ACGT 3 cut(s) 41, 275, 2980
TaqII GACCGA 2 cut(s) 3338, 4186
TatI WGTACW 5 cut(s) 886, 1482, 3888, 4040, 4279
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 8 cut(s) 78, 983, 1271, 1951, 1972, 2597, 3287, 3503
TseFI GTSAC 3 cut(s) 946, 2918, 3445
TseI GCWGC 7 cut(s) 131, 899, 2147, 3194, 3197, 3695, 4079
Tsp45I GTSAC 3 cut(s) 946, 2918, 3445
Van91I CCANNNNNTGG 2 cut(s) 716, 1456
VpaK11BI GGWCC 8 cut(s) 156, 207, 1169, 1498, 3452, 4111, 4169, 4224
XagI CCTNNNNNAGG 1 cut(s) 1451
XapI RAATTY 3 cut(s) 1119, 3014, 3355
XbaI TCTAGA 1 cut(s) 1889
XceI RCATGY 3 cut(s) 176, 398, 1674
XcmI CCANNNNNNNNNTGG 1 cut(s) 3157
XmaJI CCTAGG 2 cut(s) 2437, 3673
XmiI GTMKAC 3 cut(s) 15, 1362, 3864
XmnI GAANNNNTTC 4 cut(s) 546, 1689, 2137, 4320
ZrmI AGTACT 2 cut(s) 888, 1484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.