Rroxscaffold_2G00082230

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000472
Physical Location & Seq
Reverse (-)
5123435 .. 5131306
7872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082230.1

Sequence Viewer

Length: 4341 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGATGATGAGGTTGAGTTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCAGTTGTAACAAAGAGGAAGATGATCATGAAGGTAAGACTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACACAGATATTTGGGTGCAAGTCTCAAGCATACAAACTAGAAATTCTAAAAGAAGTCAGTGGCATCATCAAGCCTTCAAGGATGACTCTATTACTTGGTCCTCCAAGCTGTGGGAAAACCACCTTATTACAGGCACTTGCAGGAAAACTTAACCACTCTCTCAAGGTTCAAGGAGAAATAACTTACAATGGTTATAAGATGAACGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGCTGCCAGGATATTATGAAAGAAGTTGCTAGAAGAGAGAACCAAGCTGGTATTGTCCCAGAACCAGACATTGACGCTTATATGAAGATCCTTGGGCTGGATATTTGTGCTGATACAATCGTAGGGGATGCAATGCAAAGAGGAATCTCCGGTGGTCAAAAGAAAAGGCTGACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACTTTTCAAATTGTAACTTGTCTGCAGCAGTTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACTTTTCATCTGTTTGATGATATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCTAGTGACAATGTTGTGGAGTTCTTTCAGGAGTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAGGAGGCAAGAGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTATAGGTATGTCAGTGTTGATAAGTTCGTAAATATGTTTAAAGACTTCCATGTCGGAAAGAAGCTTGAAGGGGAACTTTGCAAGCCTTTCGATCAATCTGAGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGCGAAACTCATTTGTTCATTTATTCAAATCAGCACAGCTTGTGGTCATTGCGCTAATAACAATGACAATCTTTTCACGTACATGGATGAAAATCGACGAGACCCATGCAAAGTACTACATGAGTTCTTTGTTTTATGCTCTACTTAGACTGCTCTGCATTGGAATTGCAGAGATATCAATGACTGCCTCTAGACTTGCAGTCCTCTATAAGCAAAGAGATTTCTACTTCTATCCTGCATGGGCTTATTCTCTTCCAGCTGCCATTCTAAAGATTCCATTCTCATTGCTAGATGCATTTCTTTGGACAGCCCTCACTTATTATGTTATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTTTGTTCCTCGTGCATCAAGTAGCAATATCGCTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTCGGTCTATTCTCTTTAATATCAATTAATCTAATAAGCATTCCTAATGCAGCTTCTCTACCTGCTTGGTTGGCATGGGGATTTTGGGTTTCTCCATTGGCCTTTGCAGAACTAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTCACTATAGGCCAGCAAGCTCTAATTAACCATGGTCTAAACTTCAGTGACTACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGATTCACATGCATACTCACTCCAGGTAGTTCTCGGACTATCATCTCTCATGAAAGATTCTCCCGTCTGAAGAAAAAGGATACTTTAAACAATTCCTGTCAAGAACACGAATTAACTTGTGGAGATACTGACATAACTTCTTCAGAATCTACAAATGTAGGCATGGTGTTACCTTTTGAGCCCATAAGTATATCATTTGAGAAACTGCATTACTTTATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGCACATTTACACCTGGGATTCTCACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACGACACTGATGGATGTTCTTTCAGGAAGAAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTCCAAGAAACATATGCCAGAATATCGGGGTATTGCGAGCAAAGTGACATACATTCTCCAGAGCTTACAGTAGAAGAATCAGTAGCATACTCAGCCTGGTTACGTTTGCCGTCCCAGATTGATAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCGACTGAACAGCGTAAAAGGTTAACAATAGCAGTAGAGCTTGTTTCAAATCCATCAATAATATTCATGGATGAACCCACGTCTGGTTTAGATGCAAGAGCAGCTGCAATAATTATGCGAGTTGTGAAAAATATCGTCAATACAGGGAGGACTATTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCATTCGACGAGCTTATTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAGCTGGGTCAAGATTCAAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAATATCAAAGATAATTACAACCCAGCAACATGGATGTTAGAAGTCACAAGTCCTTCTGCAGAAGCCACACTGGCCTTAGATTTTGCTCAGCTTTATAGAGAATCAAATCTTTGCCAGAGGAACAATGATCTAGTTAGAGAACTCAGCTTTCCAGTACAAGGCTCAAAGGAATTGTATTTTCCTACTCACTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTATTGGAGAAATCCAAGATATAATCTGGGGCGATTGGCAATTACTGCTGCATCTTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAGAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATTGGTAACTGTTCCTCTGTTTTACCATTTGTCACTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTTTCACAGGTGATCATTGAACTTCCGTATATATTACTTCAGGCAGTTATCTTTTCGACCATTACATATCCAACCATTGGTTTCCACTGGTCACTTTACAAAGTATTCTGGTATGCGTACGCTATGTTTTGTACACTGCTCTACTTCACTTACTTTGGTATATTGGTTGCTTCTGCGACCCCAACTTTCCAAGTGGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATCTAAACAAGGAAATTGTACTCCGCGGGGAAGAAAAGACTATCAGTTCCTTCTTAGAAAGCATCTATGGATACAACTATGATGATCTAGGAATTGTAGGAACTGTTCTTCTTGCATATCCACTAGTTTTTGCATTTGCGTTTGCACTTGCTACTGAAAAACTCAACTTTCAGAGGAGTGCGTGGCTGCCTCACAAATCATACTTGGCAATTTCAAAGTTTGTTCAAGCTAGTGTTTCTCCTAATTTCTTTTGTCCTATTTCAGTACCACTAGCACTGGGCCTGTACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1446

Amino Acids

163.92

Weight (kDa)

6.63

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 331 1.7e-15 ABC transporter
ABC2_membrane PF01061 488 - 697 2.8e-33 ABC-2 type transporter
PDR_assoc PF08370 702 - 752 6.1e-15 Plant PDR ABC transporter associated
ABC_tran PF00005 837 - 989 2.7e-19 ABC transporter
ABC2_membrane PF01061 1134 - 1348 3.2e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AasI GACNNNNNNGTC 1 cut(s) 1358
Acc36I ACCTGC 1 cut(s) 2026
Acc65I GGTACC 2 cut(s) 1290, 2652
AccB1I GGYRCC 2 cut(s) 1290, 2652
AccB7I CCANNNNNTGG 3 cut(s) 584, 3392, 3776
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1158, 3654
AccII CGCG 1 cut(s) 4074
AciI CCGC 3 cut(s) 428, 4072, 4074
AclWI GGATC 5 cut(s) 77, 81, 853, 1281, 3577
AcsI RAATTY 3 cut(s) 385, 516, 2087
AfiI CCNNNNNNNGG 8 cut(s) 584, 868, 1226, 1249, 2966, 3350, 3392, 3776
AhdI GACNNNNNGTC 1 cut(s) 1700
AhlI ACTAGT 1 cut(s) 4171
AjiI CACGTC 1 cut(s) 2964
AjnI CCWGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
Alw21I GWGCWC 1 cut(s) 3511
Alw26I GTCTC 5 cut(s) 501, 1100, 1595, 2628, 3422
AlwI GGATC 5 cut(s) 77, 81, 853, 1281, 3577
AlwNI CAGNNNCTG 2 cut(s) 1955, 2470
Ama87I CYCGRG 1 cut(s) 3940
AoxI GGCC 7 cut(s) 964, 1003, 1166, 2055, 2137, 3264, 4327
ApoI RAATTY 3 cut(s) 385, 516, 2087
AseI ATTAAT 1 cut(s) 1983
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1491, 1939, 2817
Asp718I GGTACC 2 cut(s) 1290, 2652
AspLEI GCGC 2 cut(s) 1555, 3645
AspS9I GGNCC 7 cut(s) 36, 572, 965, 1166, 1930, 4014, 4327
AsuHPI GGTGA 3 cut(s) 962, 3554, 3721
AvaI CYCGRG 1 cut(s) 3940
AvaII GGWCC 4 cut(s) 36, 572, 1930, 4014
BaeI ACNNNNGTAYC 2 cut(s) 876, 909
BanI GGYRCC 2 cut(s) 1290, 2652
BanII GRGCYC 2 cut(s) 253, 2418
BauI CACGAG 1 cut(s) 1883
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 3511
BbvI GCAGC 9 cut(s) 118, 761, 1057, 1747, 2018, 2974, 2996, 3472, 4221
BccI CCATC 6 cut(s) 1132, 2215, 2551, 2584, 2944, 3390
BceAI ACGGC 1 cut(s) 2755
BcgI CGANNNNNNTGC 4 cut(s) 1378, 1412, 1589, 1623
BciT130I CCWGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
BciVI GTATCC 2 cut(s) 2308, 4112
BclI TGATCA 2 cut(s) 202, 3711
BcoDI GTCTC 5 cut(s) 501, 1100, 1595, 2628, 3422
BcuI ACTAGT 1 cut(s) 4171
BfmI CTRYAG 6 cut(s) 12, 1043, 1309, 2133, 2501, 3249
BfuAI ACCTGC 1 cut(s) 2026
BfuI GTATCC 2 cut(s) 2308, 4112
BglI GCCNNNNNGGC 1 cut(s) 3263
BglII AGATCT 1 cut(s) 4048
BlpI GCTNAGC 1 cut(s) 3279
BmcAI AGTACT 3 cut(s) 1286, 1616, 2817
Bme1390I CCNGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
Bme18I GGWCC 4 cut(s) 36, 572, 1930, 4014
BmeRI GACNNNNNGTC 1 cut(s) 1700
BmeT110I CYCGRG 1 cut(s) 3940
BmgBI CACGTC 1 cut(s) 2964
BmgT120I GGNCC 7 cut(s) 36, 572, 965, 1166, 1930, 4014, 4327
BmiI GGNNCC 4 cut(s) 250, 1292, 2654, 3189
BmrFI CCNGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
BmrI ACTGGG 1 cut(s) 4334
BmsI GCATC 9 cut(s) 65, 546, 889, 1783, 1897, 1931, 2965, 3497, 4119
BmuI ACTGGG 1 cut(s) 4334
BpiI GAAGAC 1 cut(s) 701
BpmI CTGGAG 4 cut(s) 163, 1229, 2241, 2703
Bpu1102I GCTNAGC 1 cut(s) 3279
BpuEI CTTGAG 3 cut(s) 269, 483, 620
BsaAI YACGTR 1 cut(s) 1580
BsaBI GATNNNNATC 1 cut(s) 1592
BsaI GGTCTC 1 cut(s) 1595
BsaJI CCNNGG 9 cut(s) 252, 862, 1162, 1926, 2099, 2158, 2233, 2537, 4072
BsaWI WCCGGW 1 cut(s) 920
BsaXI ACNNNNNCTCC 2 cut(s) 3102, 3132
Bsc4I CCNNNNNNNGG 8 cut(s) 584, 868, 1226, 1249, 2966, 3350, 3392, 3776
Bse3DI GCAATG 4 cut(s) 909, 1548, 1784, 3652
Bse8I GATNNNNATC 1 cut(s) 1592
BseBI CCWGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
BseDI CCNNGG 9 cut(s) 252, 862, 1162, 1926, 2099, 2158, 2233, 2537, 4072
BseJI GATNNNNATC 1 cut(s) 1592
BseLI CCNNNNNNNGG 8 cut(s) 584, 868, 1226, 1249, 2966, 3350, 3392, 3776
BseMI GCAATG 4 cut(s) 909, 1548, 1784, 3652
BseMII CTCAG 9 cut(s) 704, 1398, 1439, 2462, 2766, 2790, 3293, 3349, 3630
BseRI GAGGAG 3 cut(s) 3123, 3673, 4237
BseXI GCAGC 9 cut(s) 118, 761, 1057, 1747, 2018, 2974, 2996, 3472, 4221
BseYI CCCAGC 3 cut(s) 967, 3136, 3214
Bsh1236I CGCG 1 cut(s) 4074
BshFI GGCC 7 cut(s) 966, 1005, 1168, 2057, 2139, 3266, 4329
BshNI GGYRCC 2 cut(s) 1290, 2652
BsiHKAI GWGCWC 1 cut(s) 3511
BsiHKCI CYCGRG 1 cut(s) 3940
BsiSI CCGG 1 cut(s) 921
BsiWI CGTACG 1 cut(s) 3816
BslFI GGGAC 2 cut(s) 812, 2758
BslI CCNNNNNNNGG 8 cut(s) 584, 868, 1226, 1249, 2966, 3350, 3392, 3776
BsmAI GTCTC 5 cut(s) 501, 1100, 1595, 2628, 3422
BsmFI GGGAC 2 cut(s) 812, 2758
BsmI GAATGC 4 cut(s) 162, 1995, 3080, 3561
BsnI GGCC 7 cut(s) 966, 1005, 1168, 2057, 2139, 3266, 4329
Bso31I GGTCTC 1 cut(s) 1595
BsoBI CYCGRG 1 cut(s) 3940
Bsp1286I GDGCHC 3 cut(s) 253, 2418, 3511
Bsp1407I TGTACA 1 cut(s) 3830
Bsp1720I GCTNAGC 1 cut(s) 3279
Bsp19I CCATGG 2 cut(s) 1162, 2158
BspACI CCGC 3 cut(s) 428, 4072, 4074
BspANI GGCC 7 cut(s) 966, 1005, 1168, 2057, 2139, 3266, 4329
BspCNI CTCAG 9 cut(s) 703, 1399, 1440, 2463, 2765, 2791, 3292, 3348, 3631
BspFNI CGCG 1 cut(s) 4074
BspHI TCATGA 3 cut(s) 205, 1497, 2284
BspLI GGNNCC 4 cut(s) 250, 1292, 2654, 3189
BspMAI CTGCAG 3 cut(s) 16, 1047, 3253
BspMI ACCTGC 1 cut(s) 2026
BspPI GGATC 5 cut(s) 77, 81, 853, 1281, 3577
BspT107I GGYRCC 2 cut(s) 1290, 2652
BspTNI GGTCTC 1 cut(s) 1595
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 909, 1548, 1784, 3652
BsrGI TGTACA 1 cut(s) 3830
BssECI CCNNGG 9 cut(s) 252, 862, 1162, 1926, 2099, 2158, 2233, 2537, 4072
BssNAI GTATAC 2 cut(s) 1159, 3655
BssSI CACGAG 1 cut(s) 1883
BssT1I CCWWGG 6 cut(s) 862, 1162, 1926, 2099, 2158, 2233
Bst1107I GTATAC 2 cut(s) 1159, 3655
Bst2BI CACGAG 1 cut(s) 1883
Bst2UI CCWGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
Bst4CI ACNGT 9 cut(s) 367, 745, 1838, 1957, 2731, 3128, 3611, 4041, 4153
Bst6I CTCTTC 2 cut(s) 799, 1758
BstAPI GCANNNNNTGC 1 cut(s) 3482
BstAUI TGTACA 1 cut(s) 3830
BstBAI YACGTR 1 cut(s) 1580
BstC8I GCNNGC 6 cut(s) 54, 1391, 1474, 2141, 2145, 2699
BstDSI CCRYGG 3 cut(s) 1162, 2158, 4072
BstENI CCTNNNNNAGG 1 cut(s) 1247
BstFNI CGCG 1 cut(s) 4074
BstHHI GCGC 2 cut(s) 1555, 3645
BstMAI GTCTC 5 cut(s) 501, 1100, 1595, 2628, 3422
BstMWI GCNNNNNNNGC 6 cut(s) 1011, 2027, 2753, 2984, 3263, 3482
BstNI CCWGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
BstNSI RCATGY 5 cut(s) 56, 1424, 1476, 2247, 3417
BstSCI CCNGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
BstSFI CTRYAG 6 cut(s) 12, 1043, 1309, 2133, 2501, 3249
BstUI CGCG 1 cut(s) 4074
BstV1I GCAGC 9 cut(s) 118, 761, 1057, 1747, 2018, 2974, 2996, 3472, 4221
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 3 cut(s) 86, 858, 4048
BstXI CCANNNNNNTGG 3 cut(s) 441, 1078, 3222
BstYI RGATCY 3 cut(s) 86, 858, 4048
BstZ17I GTATAC 2 cut(s) 1159, 3655
BsuI GTATCC 2 cut(s) 2308, 4112
BsuRI GGCC 7 cut(s) 966, 1005, 1168, 2057, 2139, 3266, 4329
BtgI CCRYGG 3 cut(s) 1162, 2158, 4072
BtrI CACGTC 1 cut(s) 2964
BtsI GCAGTG 2 cut(s) 131, 3833
BveI ACCTGC 1 cut(s) 2026
Cac8I GCNNGC 6 cut(s) 54, 1391, 1474, 2141, 2145, 2699
CaiI CAGNNNCTG 2 cut(s) 1955, 2470
CciI TCATGA 3 cut(s) 205, 1497, 2284
CfoI GCGC 2 cut(s) 1555, 3645
Cfr13I GGNCC 7 cut(s) 36, 572, 965, 1166, 1930, 4014, 4327
Cfr42I CCGCGG 1 cut(s) 4075
CseI GACGC 1 cut(s) 854
CsiI ACCWGGT 1 cut(s) 2866
DraI TTTAAA 3 cut(s) 1348, 2322, 3409
DrdI GACNNNNNNGTC 1 cut(s) 1358
DriI GACNNNNNGTC 1 cut(s) 1700
DseDI GACNNNNNNGTC 1 cut(s) 1358
Eam1104I CTCTTC 2 cut(s) 799, 1758
Eam1105I GACNNNNNGTC 1 cut(s) 1700
EarI CTCTTC 2 cut(s) 799, 1758
Eco130I CCWWGG 6 cut(s) 862, 1162, 1926, 2099, 2158, 2233
Eco147I AGGCCT 1 cut(s) 1005
Eco24I GRGCYC 2 cut(s) 253, 2418
Eco31I GGTCTC 1 cut(s) 1595
Eco32I GATATC 3 cut(s) 996, 1677, 2193
Eco47I GGWCC 4 cut(s) 36, 572, 1930, 4014
Eco88I CYCGRG 1 cut(s) 3940
EcoNI CCTNNNNNAGG 1 cut(s) 1247
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
EcoRV GATATC 3 cut(s) 996, 1677, 2193
EcoT14I CCWWGG 6 cut(s) 862, 1162, 1926, 2099, 2158, 2233
EcoT22I ATGCAT 4 cut(s) 58, 1798, 2249, 3596
EcoT38I GRGCYC 2 cut(s) 253, 2418
ErhI CCWWGG 6 cut(s) 862, 1162, 1926, 2099, 2158, 2233
FalI AAGNNNNNCTT 6 cut(s) 1368, 1400, 1461, 1493, 2802, 2834
FaqI GGGAC 2 cut(s) 812, 2758
FauI CCCGC 1 cut(s) 4067
FauNDI CATATG 1 cut(s) 2674
FbaI TGATCA 2 cut(s) 202, 3711
FblI GTMKAC 2 cut(s) 1158, 3654
FriOI GRGCYC 2 cut(s) 253, 2418
GlaI GCGC 2 cut(s) 1554, 3644
GsaI CCCAGC 3 cut(s) 971, 3140, 3218
GsuI CTGGAG 4 cut(s) 163, 1229, 2241, 2703
HaeIII GGCC 7 cut(s) 966, 1005, 1168, 2057, 2139, 3266, 4329
HapII CCGG 1 cut(s) 921
HgaI GACGC 1 cut(s) 854
HhaI GCGC 2 cut(s) 1555, 3645
Hin6I GCGC 2 cut(s) 1553, 3643
HinP1I GCGC 2 cut(s) 1553, 3643
HincII GTYRAC 2 cut(s) 1053, 2907
HindII GTYRAC 2 cut(s) 1053, 2907
HindIII AAGCTT 3 cut(s) 457, 1370, 3155
HpaI GTTAAC 1 cut(s) 2907
HpaII CCGG 1 cut(s) 921
HphI GGTGA 3 cut(s) 962, 3554, 3721
Hpy166II GTNNAC 6 cut(s) 1053, 1159, 2907, 3545, 3655, 3833
Hpy8I GTNNAC 6 cut(s) 1053, 1159, 2907, 3545, 3655, 3833
Hpy99I CGWCG 3 cut(s) 264, 1601, 3089
HpyAV CCTTC 9 cut(s) 203, 290, 558, 1139, 1370, 1950, 2624, 3255, 4108
HpyCH4III ACNGT 9 cut(s) 367, 745, 1838, 1957, 2731, 3128, 3611, 4041, 4153
HpyCH4IV ACGT 6 cut(s) 170, 259, 1579, 2764, 2963, 4335
HpyF10VI GCNNNNNNNGC 6 cut(s) 1011, 2027, 2753, 2984, 3263, 3482
HpySE526I ACGT 6 cut(s) 170, 259, 1579, 2764, 2963, 4335
HspAI GCGC 2 cut(s) 1553, 3643
KpnI GGTACC 2 cut(s) 1294, 2656
Ksp22I TGATCA 2 cut(s) 202, 3711
KspAI GTTAAC 1 cut(s) 2907
KspI CCGCGG 1 cut(s) 4075
LmnI GCTCC 8 cut(s) 248, 435, 1019, 2101, 2201, 2570, 3400, 3506
Lsp1109I GCAGC 9 cut(s) 118, 761, 1057, 1747, 2018, 2974, 2996, 3472, 4221
LweI GCATC 9 cut(s) 65, 546, 889, 1783, 1897, 1931, 2965, 3497, 4119
MabI ACCWGGT 1 cut(s) 2866
MaeII ACGT 6 cut(s) 170, 259, 1579, 2764, 2963, 4335
MbiI CCGCTC 1 cut(s) 430
MflI RGATCY 3 cut(s) 86, 858, 4048
MhlI GDGCHC 3 cut(s) 253, 2418, 3511
MlyI GAGTC 2 cut(s) 553, 1048
MmeI TCCRAC 2 cut(s) 1342, 3794
Mph1103I ATGCAT 4 cut(s) 58, 1798, 2249, 3596
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1491, 1939, 2817
MslI CAYNNNNRTG 3 cut(s) 51, 1419, 1582
MspA1I CMGCKG 3 cut(s) 1760, 2987, 4074
MspI CCGG 1 cut(s) 921
MspR9I CCNGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
Mva1269I GAATGC 4 cut(s) 162, 1995, 3080, 3561
MvaI CCWGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
MvnI CGCG 1 cut(s) 4074
MwoI GCNNNNNNNGC 6 cut(s) 1011, 2027, 2753, 2984, 3263, 3482
NcoI CCATGG 2 cut(s) 1162, 2158
NdeI CATATG 1 cut(s) 2674
NlaIV GGNNCC 4 cut(s) 250, 1292, 2654, 3189
NmuCI GTSAC 8 cut(s) 171, 1172, 2128, 2174, 2705, 3235, 3631, 3789
NsiI ATGCAT 4 cut(s) 58, 1798, 2249, 3596
NspI RCATGY 5 cut(s) 56, 1424, 1476, 2247, 3417
PaeI GCATGC 2 cut(s) 56, 1476
PagI TCATGA 3 cut(s) 205, 1497, 2284
PceI AGGCCT 1 cut(s) 1005
PctI GAATGC 4 cut(s) 162, 1995, 3080, 3561
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1491, 1939, 2817
Pfl23II CGTACG 1 cut(s) 3816
PflMI CCANNNNNTGG 3 cut(s) 584, 3392, 3776
PfoI TCCNGGA 1 cut(s) 1245
PleI GAGTC 2 cut(s) 553, 1048
PpsI GAGTC 2 cut(s) 553, 1048
Ppu21I YACGTR 1 cut(s) 1580
PpuMI RGGWCCY 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 1983
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
PspFI CCCAGC 3 cut(s) 967, 3136, 3214
PspGI CCWGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
PspLI CGTACG 1 cut(s) 3816
PspN4I GGNNCC 4 cut(s) 250, 1292, 2654, 3189
PspPI GGNCC 7 cut(s) 36, 572, 965, 1166, 1930, 4014, 4327
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 4137, 4169
PstI CTGCAG 3 cut(s) 16, 1047, 3253
PstNI CAGNNNCTG 2 cut(s) 1955, 2470
PsuI RGATCY 3 cut(s) 86, 858, 4048
PvuII CAGCTG 2 cut(s) 1760, 2987
RseI CAYNNNNRTG 3 cut(s) 51, 1419, 1582
SacII CCGCGG 1 cut(s) 4075
Sau96I GGNCC 7 cut(s) 36, 572, 965, 1166, 1930, 4014, 4327
ScaI AGTACT 3 cut(s) 1286, 1616, 2817
SchI GAGTC 2 cut(s) 553, 1048
ScrFI CCNGG 7 cut(s) 254, 779, 1247, 2259, 2538, 2758, 2868
SduI GDGCHC 3 cut(s) 253, 2418, 3511
SexAI ACCWGGT 1 cut(s) 2866
SfaNI GCATC 9 cut(s) 65, 546, 889, 1783, 1897, 1931, 2965, 3497, 4119
SfcI CTRYAG 6 cut(s) 12, 1043, 1309, 2133, 2501, 3249
Sfr303I CCGCGG 1 cut(s) 4075
SgrBI CCGCGG 1 cut(s) 4075
SinI GGWCC 4 cut(s) 36, 572, 1930, 4014
SmiMI CAYNNNNRTG 3 cut(s) 51, 1419, 1582
SmlI CTYRAG 3 cut(s) 284, 498, 635
SmoI CTYRAG 3 cut(s) 284, 498, 635
SpeI ACTAGT 1 cut(s) 4171
SphI GCATGC 2 cut(s) 56, 1476
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 3 cut(s) 428, 4072, 4074
SspI AATATT 2 cut(s) 2946, 3576
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 7 cut(s) 252, 777, 1245, 2257, 2536, 2756, 2866
StyI CCWWGG 6 cut(s) 862, 1162, 1926, 2099, 2158, 2233
TaaI ACNGT 9 cut(s) 367, 745, 1838, 1957, 2731, 3128, 3611, 4041, 4153
TaiI ACGT 6 cut(s) 173, 262, 1582, 2767, 2966, 4338
TaqI TCGA 6 cut(s) 1398, 1596, 2497, 2885, 3084, 3755
TaqII GACCGA 1 cut(s) 1949
TatI WGTACW 7 cut(s) 1284, 1614, 2815, 3346, 3678, 3830, 4066
TauI GCSGC 1 cut(s) 430
TseFI GTSAC 8 cut(s) 171, 1172, 2128, 2174, 2705, 3235, 3631, 3789
Tsp45I GTSAC 8 cut(s) 171, 1172, 2128, 2174, 2705, 3235, 3631, 3789
TspGWI ACGGA 3 cut(s) 1199, 3714, 4059
Van91I CCANNNNNTGG 3 cut(s) 584, 3392, 3776
VpaK11BI GGWCC 4 cut(s) 36, 572, 1930, 4014
VspI ATTAAT 1 cut(s) 1983
XagI CCTNNNNNAGG 1 cut(s) 1247
XapI RAATTY 3 cut(s) 385, 516, 2087
XbaI TCTAGA 2 cut(s) 1481, 1691
XceI RCATGY 5 cut(s) 56, 1424, 1476, 2247, 3417
XcmI CCANNNNNNNNNTGG 1 cut(s) 3393
XmiI GTMKAC 2 cut(s) 1158, 3654
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1491, 1939, 2817
ZrmI AGTACT 3 cut(s) 1286, 1616, 2817
Zsp2I ATGCAT 4 cut(s) 58, 1798, 2249, 3596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.