Rroxscaffold_2G00082200

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000472
Physical Location & Seq
Reverse (-)
5063837 .. 5068135
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082200.1

Sequence Viewer

Length: 2355 bp
ATGACAGTGTTTCTTCGTACATGGATGAAAGTCGATGAGATCCATTCAAATTTCTTTATGAGTTCTTTGTTCTATGCTCTACTTAGATTGGTGTGCAATGGCACTGCAGAGTTATCATTGACTGCTTCCAGACTTGCAGTGTTTTACAAGCAAAGAGACTTTTATTTCTACCCTGCATGGGCTTATTCGGTTCCATCTGCCATCCTAAAGATTCCATTTTCATTGATAGACGCTTTTCTATGGACAGCACTTACTTATTATGTCATCGGTTACAGTCCAGAACCCGAGAGTCAATCTTATAAGCTCTTTCCTGTTGCAGCTTCTCTACCTAGCTGGCTGGAATGGGGCTTTTGGCTTTCCCCATTGGTATATGCAGAAATTGGTGCTACAGGAAACGAATTCCTTGCTCCAAGGTGGCAAAAGCTCTCATCTTCAAATATCACAATAGGTCAGCAAGCTCTAAAAGACCGTGGTCTTGATTTCAGTGAATACTTCTATTGGATATCTATAGGAGCTTTACTTGGATTTTGGTTGGTTTTCAACCTAGGTTTCACCTGTGCTCTCAGTTATTTAAAGTGGGTCTTACCCTTTGAGCCCTTGACTATATCATTTGAGAAGGTGCAATATTTTGTCGACTTACCCCAGAAACTGAGAGAGCAAGGTGTTCCACCAAAACGACTGCAACTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAGTTCTTACAGCACTTATGGGTGTTAGTGGAGCTGGAAAGACAACACTGATGGATGTTCTTTCAGGAAGGAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGACACCCAAAAGTCCAAGAAACATATGCCAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCCCCACAGATAACAGTAGAAGAGTCGATAACATACTCAGCTTGGTTACGTTTGCCAGCACAGGTTGATAGAACAGTCAGATCTGAATTTGTGAGAGAAGTTCTACAAATGATCGAGCTTGATGAAATCAAGGACGAACTAGTAGGCATACCTGGTAGGGGTATATCGACTGAACAGCGCAAACGGCTTACTATAGCAGTGGAGCTTGTTTCAAATCCATCCATAATGTTCATGGATGAACCCACCTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTTATGCGAGTGGTCAAAAACATTGTCAGCACTAGGAGGACTGTTGTATGCACCATTCACCAGCCCAGTATTGACATCTTTGAAGCATTCGATGAGGTAATTGACCAGTGCAAATCTGTGCATGAGAAAGGTATTCCTGGGGTTCCAAACATCAAAGAAAATTACAACCCCGCAACATGGATGTTAGAGGTCACCGGTCCTTCAGCAGAAGCTAAACTTGGCTTAGATTTTGCTCAACTCTATAGAGAATCACATCTATGCCGGGAGAACGACGACCTAGTTAGAGAACTCAGCTGTCCAGCAGAAGGGGCAAAGAAACTAAATTTTTCTACTCGCTTTGCACAAAATGAATGGGAGCAATTTAAAGCCTGCCTCTGGAAGCAACATCTCTCCTACTGGAGAAATCCACAATATAACCTGGGCAGATTGACAATTACTGCTGCATCCTCTATGTTATTCGGAGCACTTCTTTGGCAGAAAGGGCAGACAGTAGATAATGAACAGGATTTTTTCAACATTCTGGGATCAATGTTTGTTTTACTGCAATTCATGGGAATAGGAAACTGCTCCTCTGTTTTACCCTGTATTGCTTCAGAGCGGAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCCTATTCATTTGCGCAGGTGATCATTGAAATTCCGTACATATTTCTTCAGGCAGTTTTGTTTTCGGCAATCACATATCCAACCATAAATTTCCACTGGACACTTTACCAAGTGTTTTGGTATGTCTATGCCATGTTTTGTACACTGCTCTACTTCAGTTACTTCGGCATATTGCTTGCAGCTTTGACCCCAACATTCCCAGTGGCTATGGTCCTAGCCAGTTTCTGTTACACCATGTTCAACTTATTCTCAGGTTTCCTCGTGCCTGGACCGAAAATTCCTAAATGGTGGGTTTGGGGTTATTGGATTTGCCCTGTAGCATGGTCCTTAAACGGTCTTCTCACTGCACAGTATGGAGATCTAAACAAGGTGATAGTAGTACATGGGGAGGAAAAGACCATTAGTGACTTCTTAGAAAGTATTCATGGGTATTACTATAATGAACTAAAATATGTCGCAATTGTTCTTTTGGCATTTCCACTAGTTTTCGCTTTTGCTTTTGGAGTTGCTACAGAGAAGCTAAACTTCCAGAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

784

Amino Acids

89.31

Weight (kDa)

6.15

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 2 - 97 1.7e-11 ABC-2 type transporter
PDR_assoc PF08370 139 - 192 5.7e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 230 - 381 2.9e-20 ABC transporter
ABC2_membrane PF01061 509 - 723 2.7e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 558 - 757 2.3e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AarI CACCTGC 1 cut(s) 1822
Acc16I TGCGCA 1 cut(s) 1830
Acc36I ACCTGC 1 cut(s) 1822
AccBSI CCGCTC 1 cut(s) 1768
AccI GTMKAC 2 cut(s) 633, 1779
AciI CCGC 2 cut(s) 1341, 1768
AclWI GGATC 2 cut(s) 34, 1702
AcsI RAATTY 7 cut(s) 49, 398, 980, 1492, 1845, 1903, 2091
AcuI CTGAAG 4 cut(s) 1356, 1746, 1847, 1954
AfaI GTAC 5 cut(s) 19, 1805, 1853, 1957, 2196
AfiI CCNNNNNNNGG 6 cut(s) 178, 1052, 1142, 1347, 1475, 1545
AgeI ACCGGT 1 cut(s) 1364
AhlI ACTAGT 2 cut(s) 1033, 2296
AjnI CCWGG 5 cut(s) 715, 1045, 1306, 1587, 2080
AjuI GAANNNNNNNTTGG 2 cut(s) 1371, 1403
Alw21I GWGCWC 2 cut(s) 562, 1636
Alw26I GTCTC 2 cut(s) 150, 807
AlwI GGATC 2 cut(s) 34, 1702
AlwNI CAGNNNCTG 2 cut(s) 649, 2040
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 1 cut(s) 1815
ApeKI GCWGC 5 cut(s) 317, 1160, 1163, 1610, 1994
ApoI RAATTY 7 cut(s) 49, 398, 980, 1492, 1845, 1903, 2091
ArsI GACNNNNNNTTYG 2 cut(s) 1179, 1211
AsiGI ACCGGT 1 cut(s) 1364
Asp700I GAANNNNTTC 1 cut(s) 2235
AspA2I CCTAGG 1 cut(s) 544
AspLEI GCGC 2 cut(s) 1074, 1831
AspS9I GGNCC 5 cut(s) 1367, 1815, 2026, 2084, 2139
AsuC2I CCSGG 1 cut(s) 1433
AsuHPI GGTGA 5 cut(s) 544, 1220, 1354, 1846, 2197
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 4 cut(s) 1367, 2026, 2084, 2139
AvrII CCTAGG 1 cut(s) 544
BanII GRGCYC 1 cut(s) 597
BauI CACGAG 1 cut(s) 2075
BbsI GAAGAC 1 cut(s) 2144
Bbv12I GWGCWC 2 cut(s) 562, 1636
BbvI GCAGC 5 cut(s) 329, 1150, 1172, 1597, 2006
BccI CCATC 4 cut(s) 202, 209, 763, 1120
BceAI ACGGC 1 cut(s) 1094
BcgI CGANNNNNNTGC 2 cut(s) 386, 420
BciT130I CCWGG 5 cut(s) 717, 1047, 1308, 1589, 2082
BclI TGATCA 1 cut(s) 1836
BcnI CCSGG 1 cut(s) 1433
BcoDI GTCTC 2 cut(s) 150, 807
BcuI ACTAGT 2 cut(s) 1033, 2296
BfaI CTAG 7 cut(s) 330, 545, 1034, 1203, 1448, 2030, 2297
BfmI CTRYAG 7 cut(s) 105, 387, 507, 1086, 1411, 2130, 2325
BfuAI ACCTGC 1 cut(s) 1822
BglII AGATCT 2 cut(s) 974, 2173
BisI GCNGC 5 cut(s) 318, 1161, 1164, 1611, 1995
BlnI CCTAGG 1 cut(s) 544
BlsI GCNGC 5 cut(s) 319, 1162, 1165, 1612, 1996
Bme1390I CCNGG 6 cut(s) 717, 1047, 1308, 1433, 1589, 2082
Bme18I GGWCC 4 cut(s) 1367, 2026, 2084, 2139
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 5 cut(s) 1367, 1815, 2026, 2084, 2139
BmiI GGNNCC 2 cut(s) 192, 1314
BmrFI CCNGG 6 cut(s) 717, 1047, 1308, 1433, 1589, 2082
BmrI ACTGGG 2 cut(s) 1230, 2009
BmsI GCATC 2 cut(s) 1141, 1622
BmuI ACTGGG 2 cut(s) 1230, 2009
BoxI GACNNNNGTC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 2144
BpmI CTGGAG 2 cut(s) 738, 1588
BpuMI CCSGG 1 cut(s) 1433
BsaJI CCNNGG 5 cut(s) 410, 469, 544, 1307, 1588
BsaWI WCCGGW 1 cut(s) 1364
Bsc4I CCNNNNNNNGG 6 cut(s) 178, 1052, 1142, 1347, 1475, 1545
Bse118I RCCGGY 1 cut(s) 1364
Bse1I ACTGG 8 cut(s) 706, 799, 1236, 1276, 1571, 1916, 2015, 2034
Bse3DI GCAATG 1 cut(s) 103
BseBI CCWGG 5 cut(s) 717, 1047, 1308, 1589, 2082
BseDI CCNNGG 5 cut(s) 410, 469, 544, 1307, 1588
BseGI GGATG 7 cut(s) 30, 201, 778, 1112, 1135, 1356, 1613
BseLI CCNNNNNNNGG 6 cut(s) 178, 1052, 1142, 1347, 1475, 1545
BseMI GCAATG 1 cut(s) 103
BseMII CTCAG 5 cut(s) 577, 641, 945, 1474, 2079
BseNI ACTGG 8 cut(s) 706, 799, 1236, 1276, 1571, 1916, 2015, 2034
BseRI GAGGAG 2 cut(s) 1729, 1798
BseXI GCAGC 5 cut(s) 329, 1150, 1172, 1597, 2006
BsgI GTGCAG 1 cut(s) 2145
BshFI GGCC 1 cut(s) 1817
BshTI ACCGGT 1 cut(s) 1364
BsiHKAI GWGCWC 2 cut(s) 562, 1636
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 2 cut(s) 1365, 1432
BslI CCNNNNNNNGG 6 cut(s) 178, 1052, 1142, 1347, 1475, 1545
BsmAI GTCTC 2 cut(s) 150, 807
BsmI GAATGC 1 cut(s) 1256
BsnI GGCC 1 cut(s) 1817
BsoBI CYCGRG 1 cut(s) 284
Bsp1286I GDGCHC 3 cut(s) 562, 597, 1636
Bsp1407I TGTACA 1 cut(s) 1955
Bsp143I GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
BspACI CCGC 2 cut(s) 1341, 1768
BspANI GGCC 1 cut(s) 1817
BspCNI CTCAG 5 cut(s) 576, 642, 944, 1473, 2078
BspLI GGNNCC 2 cut(s) 192, 1314
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 1822
BspPI GGATC 2 cut(s) 34, 1702
BsrBI CCGCTC 1 cut(s) 1768
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 1364
BsrGI TGTACA 1 cut(s) 1955
BsrI ACTGG 8 cut(s) 706, 799, 1236, 1276, 1571, 1916, 2015, 2034
BssAI RCCGGY 1 cut(s) 1364
BssECI CCNNGG 5 cut(s) 410, 469, 544, 1307, 1588
BssMI GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
BssNAI GTATAC 1 cut(s) 1780
BssSI CACGAG 1 cut(s) 2075
BssT1I CCWWGG 2 cut(s) 410, 544
Bst1107I GTATAC 1 cut(s) 1780
Bst2BI CACGAG 1 cut(s) 2075
Bst2UI CCWGG 5 cut(s) 717, 1047, 1308, 1589, 2082
Bst4CI ACNGT 9 cut(s) 7, 275, 470, 910, 970, 1213, 1660, 2150, 2166
Bst6I CTCTTC 1 cut(s) 909
BstAUI TGTACA 1 cut(s) 1955
BstC8I GCNNGC 6 cut(s) 335, 456, 878, 951, 1540, 1992
BstDEI CTNAG 8 cut(s) 83, 563, 650, 931, 1393, 1460, 2065, 2227
BstDSI CCRYGG 1 cut(s) 469
BstEII GGTNACC 1 cut(s) 1360
BstF5I GGATG 7 cut(s) 30, 201, 778, 1112, 1135, 1356, 1613
BstHHI GCGC 2 cut(s) 1074, 1831
BstKTI GATC 6 cut(s) 42, 977, 1008, 1697, 1839, 2176
BstMAI GTCTC 2 cut(s) 150, 807
BstMBI GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
BstMWI GCNNNNNNNGC 4 cut(s) 1078, 1160, 1478, 1651
BstNI CCWGG 5 cut(s) 717, 1047, 1308, 1589, 2082
BstPAI GACNNNNGTC 1 cut(s) 471
BstPI GGTNACC 1 cut(s) 1360
BstSCI CCNGG 6 cut(s) 715, 1045, 1306, 1431, 1587, 2080
BstSFI CTRYAG 7 cut(s) 105, 387, 507, 1086, 1411, 2130, 2325
BstV1I GCAGC 5 cut(s) 329, 1150, 1172, 1597, 2006
BstV2I GAAGAC 1 cut(s) 2144
BstX2I RGATCY 3 cut(s) 39, 974, 2173
BstYI RGATCY 3 cut(s) 39, 974, 2173
BstZ17I GTATAC 1 cut(s) 1780
BsuRI GGCC 1 cut(s) 1817
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 7 cut(s) 30, 201, 778, 1112, 1135, 1356, 1613
BtsI GCAGTG 5 cut(s) 102, 144, 1098, 1958, 2157
BveI ACCTGC 1 cut(s) 1822
Cac8I GCNNGC 6 cut(s) 335, 456, 878, 951, 1540, 1992
CaiI CAGNNNCTG 2 cut(s) 649, 2040
CfoI GCGC 2 cut(s) 1074, 1831
Cfr10I RCCGGY 1 cut(s) 1364
Cfr13I GGNCC 5 cut(s) 1367, 1815, 2026, 2084, 2139
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 1045
Csp6I GTAC 5 cut(s) 18, 1804, 1852, 1956, 2195
CspAI ACCGGT 1 cut(s) 1364
CviQI GTAC 5 cut(s) 18, 1804, 1852, 1956, 2195
DdeI CTNAG 8 cut(s) 83, 563, 650, 931, 1393, 1460, 2065, 2227
DpnI GATC 6 cut(s) 41, 976, 1007, 1696, 1838, 2175
DpnII GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
DraI TTTAAA 2 cut(s) 573, 1534
Eam1104I CTCTTC 1 cut(s) 909
EarI CTCTTC 1 cut(s) 909
Eco130I CCWWGG 2 cut(s) 410, 544
Eco24I GRGCYC 1 cut(s) 597
Eco32I GATATC 1 cut(s) 504
Eco47I GGWCC 4 cut(s) 1367, 2026, 2084, 2139
Eco57I CTGAAG 4 cut(s) 1356, 1746, 1847, 1954
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 1360
EcoO65I GGTNACC 1 cut(s) 1360
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 5 cut(s) 715, 1045, 1306, 1587, 2080
EcoRV GATATC 1 cut(s) 504
EcoT14I CCWWGG 2 cut(s) 410, 544
EcoT38I GRGCYC 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 410, 544
FalI AAGNNNNNCTT 5 cut(s) 566, 598, 1371, 1403, 2324
FauI CCCGC 1 cut(s) 1348
FauNDI CATATG 1 cut(s) 853
FbaI TGATCA 1 cut(s) 1836
FblI GTMKAC 2 cut(s) 633, 1779
Fnu4HI GCNGC 5 cut(s) 318, 1161, 1164, 1611, 1995
FokI GGATG 7 cut(s) 37, 188, 785, 1099, 1142, 1363, 1600
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 5 cut(s) 318, 1161, 1164, 1611, 1995
FspBI CTAG 7 cut(s) 330, 545, 1034, 1203, 1448, 2030, 2297
FspI TGCGCA 1 cut(s) 1830
GlaI GCGC 2 cut(s) 1073, 1830
GluI GCNGC 5 cut(s) 318, 1161, 1164, 1611, 1995
GsuI CTGGAG 2 cut(s) 738, 1588
HaeIII GGCC 1 cut(s) 1817
HapII CCGG 2 cut(s) 1365, 1432
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 1074, 1831
Hin6I GCGC 2 cut(s) 1072, 1829
HinP1I GCGC 2 cut(s) 1072, 1829
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 4 cut(s) 211, 289, 917, 1418
HpaII CCGG 2 cut(s) 1365, 1432
HphI GGTGA 5 cut(s) 544, 1220, 1354, 1846, 2197
Hpy166II GTNNAC 3 cut(s) 634, 1780, 1958
Hpy188I TCNGA 4 cut(s) 974, 979, 1631, 1765
Hpy188III TCNNGA 7 cut(s) 129, 278, 476, 692, 783, 1546, 2344
Hpy8I GTNNAC 3 cut(s) 634, 1780, 1958
Hpy99I CGWCG 1 cut(s) 1445
HpyAV CCTTC 5 cut(s) 610, 780, 803, 1380, 1469
HpyCH4III ACNGT 9 cut(s) 7, 275, 470, 910, 970, 1213, 1660, 2150, 2166
HpyCH4IV ACGT 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 4 cut(s) 1078, 1160, 1478, 1651
HpyF3I CTNAG 8 cut(s) 83, 563, 650, 931, 1393, 1460, 2065, 2227
HpySE526I ACGT 1 cut(s) 943
HspAI GCGC 2 cut(s) 1072, 1829
Ksp22I TGATCA 1 cut(s) 1836
Kzo9I GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
LmnI GCTCC 7 cut(s) 412, 512, 749, 1096, 1525, 1631, 1742
Lsp1109I GCAGC 5 cut(s) 329, 1150, 1172, 1597, 2006
LweI GCATC 2 cut(s) 1141, 1622
MabI ACCWGGT 1 cut(s) 1045
MaeI CTAG 7 cut(s) 330, 545, 1034, 1203, 1448, 2030, 2297
MaeII ACGT 1 cut(s) 943
MaeIII GTNAC 7 cut(s) 269, 884, 939, 1360, 1973, 2042, 2219
MalI GATC 6 cut(s) 41, 976, 1007, 1696, 1838, 2175
MbiI CCGCTC 1 cut(s) 1768
MboI GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
MboII GAAGA 6 cut(s) 5, 423, 680, 926, 1853, 2144
MfeI CAATTG 1 cut(s) 2274
MflI RGATCY 3 cut(s) 39, 974, 2173
MhlI GDGCHC 3 cut(s) 562, 597, 1636
MlyI GAGTC 2 cut(s) 298, 926
MmeI TCCRAC 1 cut(s) 1919
MroXI GAANNNNTTC 1 cut(s) 2235
MseI TTAA 3 cut(s) 572, 1533, 2144
MslI CAYNNNNRTG 1 cut(s) 1426
MspA1I CMGCKG 2 cut(s) 1163, 1464
MspI CCGG 2 cut(s) 1365, 1432
MspR9I CCNGG 6 cut(s) 717, 1047, 1308, 1433, 1589, 2082
MunI CAATTG 1 cut(s) 2274
Mva1269I GAATGC 1 cut(s) 1256
MvaI CCWGG 5 cut(s) 717, 1047, 1308, 1589, 2082
MwoI GCNNNNNNNGC 4 cut(s) 1078, 1160, 1478, 1651
NciI CCSGG 1 cut(s) 1433
NdeI CATATG 1 cut(s) 853
NdeII GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
NlaIV GGNNCC 2 cut(s) 192, 1314
NmuCI GTSAC 3 cut(s) 884, 1360, 2219
NsbI TGCGCA 1 cut(s) 1830
PaqCI CACCTGC 1 cut(s) 1822
PctI GAATGC 1 cut(s) 1256
PdmI GAANNNNTTC 1 cut(s) 2235
PfeI GAWTC 2 cut(s) 211, 1418
PinAI ACCGGT 1 cut(s) 1364
PkrI GCNGC 5 cut(s) 319, 1162, 1165, 1612, 1996
PleI GAGTC 2 cut(s) 297, 925
PpsI GAGTC 2 cut(s) 297, 925
PshAI GACNNNNGTC 1 cut(s) 471
PsiI TTATAA 1 cut(s) 300
Psp6I CCWGG 5 cut(s) 715, 1045, 1306, 1587, 2080
PspEI GGTNACC 1 cut(s) 1360
PspGI CCWGG 5 cut(s) 715, 1045, 1306, 1587, 2080
PspN4I GGNNCC 2 cut(s) 192, 1314
PspPI GGNCC 5 cut(s) 1367, 1815, 2026, 2084, 2139
PstI CTGCAG 1 cut(s) 109
PstNI CAGNNNCTG 2 cut(s) 649, 2040
PsuI RGATCY 3 cut(s) 39, 974, 2173
PvuII CAGCTG 2 cut(s) 1163, 1464
RsaI GTAC 5 cut(s) 19, 1805, 1853, 1957, 2196
RsaNI GTAC 5 cut(s) 18, 1804, 1852, 1956, 2195
RseI CAYNNNNRTG 1 cut(s) 1426
SalI GTCGAC 1 cut(s) 632
SaqAI TTAA 3 cut(s) 572, 1533, 2144
SatI GCNGC 5 cut(s) 318, 1161, 1164, 1611, 1995
Sau3AI GATC 6 cut(s) 39, 974, 1005, 1694, 1836, 2173
Sau96I GGNCC 5 cut(s) 1367, 1815, 2026, 2084, 2139
SchI GAGTC 2 cut(s) 298, 926
ScrFI CCNGG 6 cut(s) 717, 1047, 1308, 1433, 1589, 2082
SduI GDGCHC 3 cut(s) 562, 597, 1636
SexAI ACCWGGT 1 cut(s) 1045
SfaNI GCATC 2 cut(s) 1141, 1622
SfcI CTRYAG 7 cut(s) 105, 387, 507, 1086, 1411, 2130, 2325
SinI GGWCC 4 cut(s) 1367, 2026, 2084, 2139
SmiMI CAYNNNNRTG 1 cut(s) 1426
SpeI ACTAGT 2 cut(s) 1033, 2296
SsiI CCGC 2 cut(s) 1341, 1768
SspI AATATT 1 cut(s) 626
SspMI CTAG 7 cut(s) 330, 545, 1034, 1203, 1448, 2030, 2297
StyD4I CCNGG 6 cut(s) 715, 1045, 1306, 1431, 1587, 2080
StyI CCWWGG 2 cut(s) 410, 544
TaaI ACNGT 9 cut(s) 7, 275, 470, 910, 970, 1213, 1660, 2150, 2166
TaiI ACGT 1 cut(s) 946
TaqI TCGA 6 cut(s) 33, 633, 920, 1008, 1061, 1260
TaqII GACCGA 1 cut(s) 2101
TatI WGTACW 3 cut(s) 1803, 1955, 2194
TfiI GAWTC 2 cut(s) 211, 1418
Tru1I TTAA 3 cut(s) 572, 1533, 2144
Tru9I TTAA 3 cut(s) 572, 1533, 2144
TseFI GTSAC 3 cut(s) 884, 1360, 2219
TseI GCWGC 5 cut(s) 317, 1160, 1163, 1610, 1994
Tsp45I GTSAC 3 cut(s) 884, 1360, 2219
TspGWI ACGGA 1 cut(s) 1839
VpaK11BI GGWCC 4 cut(s) 1367, 2026, 2084, 2139
XapI RAATTY 7 cut(s) 49, 398, 980, 1492, 1845, 1903, 2091
XcmI CCANNNNNNNNNTGG 1 cut(s) 1123
XmaJI CCTAGG 1 cut(s) 544
XmiI GTMKAC 2 cut(s) 633, 1779
XmnI GAANNNNTTC 1 cut(s) 2235
XspI CTAG 7 cut(s) 330, 545, 1034, 1203, 1448, 2030, 2297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.