MD16G1137900.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
10554067 .. 10563319
9253 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1137900.v1.1.491

Sequence Viewer

Length: 4362 bp
ATGGCTCAGTTGGCAGGGGCAGACGAAATAGAGTCTTTCCGGCTCGAGTTAGCGGAGATTGGGAGGAGCATAAGATCCTCGTTTCGAAGCCACGCCTCGAGTTTGCGAAGCACCACCATTGTCAATGCAGAAGGAGACAATGATGAAGGTTGTGTTGGTGATGAAGAACATGACTTGCATTGGGCTGCAGTTGAGAGACTGCCCACTTTTGAGAGGATTACGACCGCTCTTTTCGATGATTATGATGGCGAGTCTGCGAAAGGAGATGTCAAGGGGAGACGGGTGGTCGATGTTAGCACGCTTGGAGGGCAAGAACGGCGTGTTTTCATAGAGAAGCTCATCAAACACATTGAGAATGATAACCTTCAACTACTGCAGAAGATCAAACAGAGAATCGACAAGGTTGGGGTGAAGTTGCCGACGGTGGAAGTGAGATATGAGAATCTCTGTGTGGAAGCAGAGTGTAAGGTGGTTCATGGCAAACCCCTGCCCACTCTATGGAATGCTCTAAAGGGTATGATTTTGGGCATCGCAGAACTGCCAGGTTCAAAAACACGCAATGCCAAGATAAGCATCCTTGAAGATGTCAGTGGAATTATTAAGCCGGGAAGGATGACCTTATTGCTTGGCCCGCCGGGATGTGGAAAAACCACGTTTTTGATGGCGCTCGCAGGGAAGCTAAGCCATTCTCTCAAGGTTTCCGGTGAACTATGTTACAACGGTCATGGACTAGAAGAGTTTGTTCCTCAGAAAACCTCAGCTTATGTAAGCCAACAGGATGTGCATATTCCAGAGATCACCGTGAGGGAAACACTCGATTTCTCTGCCTGCTGTCAAGGTGTAGGAAGCCGACCTGAGATTATGATGGAAGTCAGTAGAAGGGAAAAGCAGGCAGGAATAGTCCCAGATCCGGACGTAGATGCTTACATGAAGGCTACATCTGTTAAGGGACTGAAAAATACACTTCAAACTGATTATATTCTTAAGATACTTGGTCTTGATTTTTGCGCTGACACATCGGTAGGAGATCCCATAAGAAGAGGAATATCCGGTGGCCAGAAGAAGCGGTTGACTACAGGGGAGATGATCATTGGACCTGCAAAAGCTCTGTTCATGGATGAAATATCCAATGGCTTAGATAGTTCCACGACTTTCCAACTCGTATCTTGTCTTCAGCATTTCGTGCATATCACAGATGCTACTGCGTTGATTTCACTTCTTCAGCCTGCACCGGAGACATTTGATCTCTTCGATGATATTGTCTTAATGGCAGAAGGGAAGATTGTGTTTCACGGGCCAAGAACTTCTATTGTCAAATTTTTCGAGGAGTGTGGGTTTAAGTGCCCAGAAAGGAAAGGTGTTGCTGACTTCCTTCAGGAGGTTATGTCTAGAAAAGATCAAGTGCAGTATTGGGACAGCCCTCAACCTTACAGCTACGTTTCGGTCGATCAGTTCATTAAGAAGTTCAAGGATGGACGTCTAGGCGGGCAGTTACACAAGGAGCTCTCGAAGCCATTCGATAAGTCTCAAAGCCACAAGGATGCTCTATCCTTTAGAAAATACTCATTACCTAAATGGGAACTTTTTAAGTCCTGCACAAGGAGGGAATTTCTTCTGATGAAAAGAAATTCTTTTATTTATGTTTTCAAATCAGTTCAGCTAGTCATTATTTCTTCAATAACAATGACCGTTTTCCTCCGGACTCGAATGGCTATCGACTTGATCCACGCAAATTATTATATGGGCTCTTTATTCTACGGACTCGTCATACTTCTCGTTGATGGATTCCCGGAACTGTCAATGACTGTCTCAAGAATTGTGGTTTTCTACAAACAGAAAGAGTTGTGTTTTTATCCTGCTTGGGCTTATGCAATCCCAGCTGCCATCCTAAAGGTTCCGCTATCGTGCTTGGAGGCTTTTGTTTGGACTGCTCTTACATACTATGTTATCGGTTACACCCCTGAGGTTGGAAGGTTCTTTCGCCAGTTCCTTCTACTCTTCGCTATGCACTTAACATCAATATCCATGTTTCGATTTATTGCTTCGGTTTTTCAAACTGTGGGTGCTGCTATGACAGCTGGTACTTCATCAATATTGGCTGTTTTACTATTTGGTGGCTTCGTTATACCAAAATCATATATGCCGGCTTGGATTAAGTGGGGATTTTGGGTTTCTCCTTTGACGTATGGGGAGATAGGATTAACAGTTAACGAATTCCTAGCGCCCCGATGGGAAAAGGTTTATGGAAACACAACTCTCAGTCTACAAGTACTCGAAAGCCGTGGATTAAACTTTGAAGGCTATTTCTATTGGATATCACTTGGCGCGTTAGTAGGGTTCACGGTATTATTCAATGTTGGTTTCACCTTAGCTTTGACTTTCTTGAAGTCTCCCGGAAGGCCGCCTGCTATTATTTCTTATGAAAAGTATCGTCAACTGCAAGGAAAAGGAGACAAAAAAACCGATATAGACAGAGAGCATAAGCCCACTAGTGCACCTAACACTACTGCAGAAGCCAAGAAGGGGAGGATGGTTTTACCATTTGAGCCCCTAGCAGTAGCTTTTCAGGATGTACAATACTATGTTGACACTCCTTTGGAAATGAGAAAGCGGGGCTTTACGCAGAAAAGGCTTCAGCTCCTATCTGATGTTACAGGTTCTTTCAGGCCAGGTATTCTAACGGCATTAATGGGAGTCAGCGGGGCCGGGAAAACAACTCTCATGGATGTTCTTTGTGGAAGAAAAACTGGTGGTACCATTGAAGGGGAGATAAGAATTGGAGGGTACCCCAAGGTTCAAGATACATTTGCTAGGGTATCAGGCTACTGTGAGCAAAATGACATACATTCTCCGCAAATAACTGTTGAAGAATCGATCGTATATTCTGCTTGGCTGCGCCTCCCTTCTCATATCGATTCTAATACTAAAGCTGAATTTGTAAAGGAAGTCCTCGAAACTATTGAGCTAGACGGGATTAAAGATTGCTTAGTGGGGATGGCAGGAGTAAGTGGTTTATCAACTGAGCAGCGCAAAAGGCTTACCATAGCTGTGGAACTCATTGCCAATCCATCGATCATGTTCATGGATGAACCAACTTCAGGTTTAGATGCGCGGGCAGCTGCTATTGTCATGAGAGCAGTGAAAAATGTTGCTGCAACGGGAAGAACGGTTGTTTGCACCATCCACCAACCAAGTATTGATATTTTCGAGGCATTTGATGAGTTGATTCTGATGAAAACCGGGGGACACATAATCTATTGCGGTCCACTGGGGCAGAACTCAAGTGAGGTCATTGAGTACTTCGAGAGTATTCCCCGGGTGCCCTCAATTAAAGACAATTATAATCCAGCGACATGGATGTTAGAAGTTACTTCAAAATCTGTGGAATCTGAGCTCGGTATAGATTTTGCGCAAATATATAGGGAATCCGCCTTGTATGGGTCGAACAAGGATTTAGCCAAGCAATTGTGTTCACCATCTCCTGGTTCAAATGAAATGCATTTTGCTACTCGTTTTCCACAGAACGGTTGGGGGCAGTTCAAAGCTTGCCTGTGGAAACAGAACTTGTCTTACTGGAGAAGTCCTTCATATAATCTGACACGCATAATATTTATGTTTTGCGCATCTCTGCTGTTCGGAATACTGTTCTGGGATCAAGGGAATAAAATAAATAGCCAGCAAGACCTCTTCAATATGTATGGTTCAATGTTCTGTGCAGTAATATTCTTTGGCATAAACAATTGCTCAACAGTTCTACCATACGTTGCCACAGAGCGGAATGTTCTATACCGAGAAAGATTTGCAGGAATGTTCTCTTCATGGGCCTATTCGTTCGCACAGGTACTAGTTGAGGTTCCTTACGCGTTCACTCAAGCAGTTATTTATGTTGCGATCACATACCCAATGATCGGTTACCAGTGGTCTGCCTACAAGATATTTTGGTCATTCTATAGCATGTTCTGCATACTACTAAGCTTCAATTACCTAGGAATGCTGATCGTGTCGTTGACACCAAACGTTCAGGTGGCTGCGATCGTGGCATCAGCTTCCTACGCAATGCTGAACTTGTTTTCCGGGTTTGTCATTCCAAGGCTGCAAATACCGAAGTGGTGGCTCTGGTTGTATTACTTATCCCCTACATCATGGGCCCTAAACGGAATGCTTACGCCGCAGTATGGAGATATGCAGAAGGAAATCCAGGCGTTCGGAGAGACTAAAACTGTCGCTGCCTTCCTAGAAGATTACTTCGGGTTTGACTACAACCTTTTAGGCCTTGTTGCTGCTGTTTCTCTTCTCCTCCCCATTGCGTTTGCTTCCCTTTTCGCATACTTCATCGGAAAGTTAAACTTCCAGAGGAGGTAA

Protein Analysis

1454

Amino Acids

162.87

Weight (kDa)

7.96

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 193 - 375 2.5e-17 ABC transporter
ABC2_membrane PF01061 528 - 739 1.1e-40 ABC-2 type transporter
PDR_assoc PF08370 744 - 805 3.5e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 881 - 1033 1.9e-20 ABC transporter
ABC2_membrane PF01061 1179 - 1390 1e-57 ABC-2 type transporter
ABC2_membrane_3 PF12698 1224 - 1433 8.2e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3342
AatII GACGTC 1 cut(s) 1480
Acc16I TGCGCA 2 cut(s) 3411, 3622
Acc36I ACCTGC 1 cut(s) 1105
Acc65I GGTACC 2 cut(s) 2753, 2784
AccB1I GGYRCC 3 cut(s) 2753, 2784, 3319
AccB7I CCANNNNNTGG 2 cut(s) 498, 3482
AccBSI CCGCTC 2 cut(s) 227, 3775
AccI GTMKAC 1 cut(s) 2263
AccII CGCG 3 cut(s) 2327, 3112, 3863
AccIII TCCGGA 2 cut(s) 910, 1698
AclI AACGTT 1 cut(s) 4017
AclWI GGATC 5 cut(s) 69, 902, 1022, 1717, 3660
AcoI YGGCCR 1 cut(s) 1054
AcsI RAATTY 5 cut(s) 1316, 1607, 1627, 2213, 2933
AcuI CTGAAG 5 cut(s) 1157, 1205, 1358, 2618, 3081
AcyI GRCGYC 1 cut(s) 1477
AfaI GTAC 7 cut(s) 2083, 2271, 2574, 2755, 2786, 3299, 3843
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 3861
AhdI GACNNNNNGTC 1 cut(s) 284
AhlI ACTAGT 2 cut(s) 2489, 3844
AjnI CCWGG 4 cut(s) 541, 2668, 3481, 4197
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AloI GAACNNNNNNTCC 2 cut(s) 4055, 4087
Alw21I GWGCWC 3 cut(s) 1506, 2497, 3396
Alw26I GTCTC 9 cut(s) 129, 190, 271, 1229, 1530, 1813, 2394, 2445, 4205
Alw44I GTGCAC 1 cut(s) 2493
AlwI GGATC 5 cut(s) 69, 902, 1022, 1717, 3660
Ama87I CYCGRG 3 cut(s) 44, 97, 3315
Aor13HI TCCGGA 2 cut(s) 910, 1698
AoxI GGCC 9 cut(s) 628, 1054, 1295, 2399, 2666, 2703, 3822, 4146, 4270
ApaI GGGCCC 1 cut(s) 4150
ApaLI GTGCAC 1 cut(s) 2493
ApoI RAATTY 5 cut(s) 1316, 1607, 1627, 2213, 2933
AseI ATTAAT 1 cut(s) 2687
Asp700I GAANNNNTTC 3 cut(s) 1514, 1611, 3583
Asp718I GGTACC 2 cut(s) 2753, 2784
AspA2I CCTAGG 1 cut(s) 3985
AspLEI GCGC 9 cut(s) 667, 1010, 2224, 2327, 2898, 3030, 3112, 3412, 3623
AspS9I GGNCC 8 cut(s) 629, 1094, 1295, 2703, 3263, 3822, 4146, 4147
AsuC2I CCSGG 9 cut(s) 606, 636, 1790, 2394, 2707, 3241, 3316, 3317, 4075
AsuHPI GGTGA 6 cut(s) 170, 421, 716, 790, 2356, 3465
AsuII TTCGAA 1 cut(s) 85
AvaI CYCGRG 3 cut(s) 44, 97, 3315
AvaII GGWCC 2 cut(s) 1094, 3263
AvrII CCTAGG 1 cut(s) 3985
AxyI CCTNAGG 1 cut(s) 1962
BaeGI GKGCMC 4 cut(s) 1346, 2497, 3324, 4150
BalI TGGCCA 1 cut(s) 1056
BanI GGYRCC 3 cut(s) 2753, 2784, 3319
BanII GRGCYC 5 cut(s) 1506, 1748, 2550, 3396, 4150
BarI GAAGNNNNNNTAC 2 cut(s) 1155, 1187
BbsI GAAGAC 1 cut(s) 1163
Bbv12I GWGCWC 3 cut(s) 1506, 2497, 3396
BbvCI CCTCAGC 1 cut(s) 757
BceAI ACGGC 3 cut(s) 332, 2265, 2697
BcgI CGANNNNNNTGC 2 cut(s) 806, 840
BciT130I CCWGG 4 cut(s) 543, 2670, 3483, 4199
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 9 cut(s) 606, 636, 1790, 2394, 2707, 3241, 3316, 3317, 4075
BcoDI GTCTC 9 cut(s) 129, 190, 271, 1229, 1530, 1813, 2394, 2445, 4205
BcuI ACTAGT 2 cut(s) 2489, 3844
BfmI CTRYAG 5 cut(s) 186, 374, 1074, 2508, 3949
BfoI RGCGCY 2 cut(s) 668, 2225
BfrI CTTAAG 1 cut(s) 983
BfuAI ACCTGC 1 cut(s) 1105
BlnI CCTAGG 1 cut(s) 3985
BlpI GCTNAGC 1 cut(s) 680
BmcAI AGTACT 2 cut(s) 2271, 3299
Bme18I GGWCC 2 cut(s) 1094, 3263
BmeRI GACNNNNNGTC 1 cut(s) 284
BmeT110I CYCGRG 3 cut(s) 44, 97, 3315
BmgT120I GGNCC 8 cut(s) 629, 1094, 1295, 2703, 3263, 3822, 4146, 4147
BmiI GGNNCC 7 cut(s) 1896, 2704, 2755, 2786, 3321, 3855, 4148
BmrI ACTGGG 1 cut(s) 3278
BmsI GCATC 8 cut(s) 537, 582, 910, 1186, 1531, 3097, 3632, 4049
BmuI ACTGGG 1 cut(s) 3278
BpiI GAAGAC 1 cut(s) 1163
BpmI CTGGAG 1 cut(s) 3595
Bpu10I CCTNAGC 2 cut(s) 757, 2368
Bpu1102I GCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 4 cut(s) 677, 1795, 3265, 3855
BpuMI CCSGG 9 cut(s) 606, 636, 1790, 2394, 2707, 3241, 3316, 3317, 4075
Bsa29I ATCGAT 3 cut(s) 2873, 2913, 3071
BsaBI GATNNNNATC 1 cut(s) 572
BsaHI GRCGYC 1 cut(s) 1477
BsaJI CCNNGG 7 cut(s) 2281, 2790, 3240, 3314, 3315, 3985, 4088
BsaWI WCCGGW 5 cut(s) 701, 910, 1049, 1231, 1698
BsaXI ACNNNNNCTCC 4 cut(s) 1319, 1349, 1370, 1400
Bse118I RCCGGY 1 cut(s) 2143
Bse1I ACTGG 5 cut(s) 1984, 2752, 3273, 3578, 3916
Bse21I CCTNAGG 1 cut(s) 1962
Bse3DI GCAATG 4 cut(s) 565, 3057, 4062, 4302
Bse8I GATNNNNATC 1 cut(s) 572
BseAI TCCGGA 2 cut(s) 910, 1698
BseBI CCWGG 4 cut(s) 543, 2670, 3483, 4199
BseCI ATCGAT 3 cut(s) 2873, 2913, 3071
BseDI CCNNGG 7 cut(s) 2281, 2790, 3240, 3314, 3315, 3985, 4088
BseJI GATNNNNATC 1 cut(s) 572
BseMI GCAATG 4 cut(s) 565, 3057, 4062, 4302
BseMII CTCAG 8 cut(s) 20, 761, 771, 846, 1953, 2272, 3012, 3381
BseNI ACTGG 5 cut(s) 1984, 2752, 3273, 3578, 3916
BseRI GAGGAG 3 cut(s) 79, 1340, 4286
BseSI GKGCMC 4 cut(s) 1346, 2497, 3324, 4150
BseYI CCCAGC 1 cut(s) 1876
BsgI GTGCAG 4 cut(s) 1212, 1424, 1579, 3735
Bsh1236I CGCG 3 cut(s) 2327, 3112, 3863
Bsh1285I CGRYCG 4 cut(s) 225, 1446, 2877, 4035
BshFI GGCC 9 cut(s) 630, 1056, 1297, 2401, 2668, 2705, 3824, 4148, 4272
BshNI GGYRCC 3 cut(s) 2753, 2784, 3319
BshVI ATCGAT 3 cut(s) 2873, 2913, 3071
BsiEI CGRYCG 4 cut(s) 225, 1446, 2877, 4035
BsiHKAI GWGCWC 3 cut(s) 1506, 2497, 3396
BsiHKCI CYCGRG 3 cut(s) 44, 97, 3315
BslFI GGGAC 4 cut(s) 887, 963, 1427, 3258
BsmAI GTCTC 9 cut(s) 129, 190, 271, 1229, 1530, 1813, 2394, 2445, 4205
BsmBI CGTCTC 1 cut(s) 271
BsmFI GGGAC 4 cut(s) 887, 963, 1427, 3258
BsmI GAATGC 3 cut(s) 508, 3996, 4164
BsnI GGCC 9 cut(s) 630, 1056, 1297, 2401, 2668, 2705, 3824, 4148, 4272
BsoBI CYCGRG 3 cut(s) 44, 97, 3315
Bsp119I TTCGAA 1 cut(s) 85
Bsp120I GGGCCC 1 cut(s) 4146
Bsp1286I GDGCHC 8 cut(s) 1346, 1506, 1748, 2497, 2550, 3324, 3396, 4150
Bsp13I TCCGGA 2 cut(s) 910, 1698
Bsp1407I TGTACA 1 cut(s) 2572
Bsp1720I GCTNAGC 1 cut(s) 680
BspANI GGCC 9 cut(s) 630, 1056, 1297, 2401, 2668, 2705, 3824, 4148, 4272
BspCNI CTCAG 8 cut(s) 19, 760, 770, 847, 1954, 2271, 3013, 3382
BspDI ATCGAT 3 cut(s) 2873, 2913, 3071
BspEI TCCGGA 2 cut(s) 910, 1698
BspFNI CGCG 3 cut(s) 2327, 3112, 3863
BspHI TCATGA 1 cut(s) 3129
BspLI GGNNCC 7 cut(s) 1896, 2704, 2755, 2786, 3321, 3855, 4148
BspMAI CTGCAG 3 cut(s) 190, 378, 2512
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 5 cut(s) 69, 902, 1022, 1717, 3660
BspT104I TTCGAA 1 cut(s) 85
BspT107I GGYRCC 3 cut(s) 2753, 2784, 3319
BspTI CTTAAG 1 cut(s) 983
BsrBI CCGCTC 2 cut(s) 227, 3775
BsrDI GCAATG 4 cut(s) 565, 3057, 4062, 4302
BsrFI RCCGGY 1 cut(s) 2143
BsrGI TGTACA 1 cut(s) 2572
BsrI ACTGG 5 cut(s) 1984, 2752, 3273, 3578, 3916
BssAI RCCGGY 1 cut(s) 2143
BssECI CCNNGG 7 cut(s) 2281, 2790, 3240, 3314, 3315, 3985, 4088
BssNI GRCGYC 1 cut(s) 1477
BssT1I CCWWGG 3 cut(s) 2790, 3985, 4088
Bst2UI CCWGG 4 cut(s) 543, 2670, 3483, 4199
Bst6I CTCTTC 7 cut(s) 729, 1033, 1253, 2003, 3692, 3820, 4296
BstACI GRCGYC 1 cut(s) 1477
BstAFI CTTAAG 1 cut(s) 983
BstAPI GCANNNNNTGC 2 cut(s) 1183, 3960
BstAUI TGTACA 1 cut(s) 2572
BstBI TTCGAA 1 cut(s) 85
BstDSI CCRYGG 1 cut(s) 2281
BstEII GGTNACC 1 cut(s) 3911
BstENI CCTNNNNNAGG 2 cut(s) 1376, 1597
BstFNI CGCG 3 cut(s) 2327, 3112, 3863
BstH2I RGCGCY 2 cut(s) 668, 2225
BstHHI GCGC 9 cut(s) 667, 1010, 2224, 2327, 2898, 3030, 3112, 3412, 3623
BstMAI GTCTC 9 cut(s) 129, 190, 271, 1229, 1530, 1813, 2394, 2445, 4205
BstMCI CGRYCG 4 cut(s) 225, 1446, 2877, 4035
BstNI CCWGG 4 cut(s) 543, 2670, 3483, 4199
BstNSI RCATGY 1 cut(s) 3958
BstPI GGTNACC 1 cut(s) 3911
BstSFI CTRYAG 5 cut(s) 186, 374, 1074, 2508, 3949
BstSLI GKGCMC 4 cut(s) 1346, 2497, 3324, 4150
BstUI CGCG 3 cut(s) 2327, 3112, 3863
BstV2I GAAGAC 1 cut(s) 1163
BstX2I RGATCY 3 cut(s) 74, 907, 1027
BstXI CCANNNNNNTGG 2 cut(s) 3049, 3354
BstYI RGATCY 3 cut(s) 74, 907, 1027
Bsu15I ATCGAT 3 cut(s) 2873, 2913, 3071
Bsu36I CCTNAGG 1 cut(s) 1962
BsuRI GGCC 9 cut(s) 630, 1056, 1297, 2401, 2668, 2705, 3824, 4148, 4272
BsuTUI ATCGAT 3 cut(s) 2873, 2913, 3071
BtgI CCRYGG 1 cut(s) 2281
BtgZI GCGATG 1 cut(s) 514
BtsI GCAGTG 1 cut(s) 3144
BtsIMutI CAGTG 4 cut(s) 595, 3144, 3266, 3923
BveI ACCTGC 1 cut(s) 1105
CciI TCATGA 1 cut(s) 3129
CfoI GCGC 9 cut(s) 667, 1010, 2224, 2327, 2898, 3030, 3112, 3412, 3623
Cfr10I RCCGGY 1 cut(s) 2143
Cfr13I GGNCC 8 cut(s) 629, 1094, 1295, 2703, 3263, 3822, 4146, 4147
Cfr9I CCCGGG 1 cut(s) 3315
ClaI ATCGAT 3 cut(s) 2873, 2913, 3071
Csp6I GTAC 7 cut(s) 2082, 2270, 2573, 2754, 2785, 3298, 3842
CspCI CAANNNNNGTGG 4 cut(s) 1800, 1835, 3363, 3398
CviQI GTAC 7 cut(s) 2082, 2270, 2573, 2754, 2785, 3298, 3842
DriI GACNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 1 cut(s) 1054
Eam1104I CTCTTC 7 cut(s) 729, 1033, 1253, 2003, 3692, 3820, 4296
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 7 cut(s) 729, 1033, 1253, 2003, 3692, 3820, 4296
EciI GGCGGA 1 cut(s) 3418
Ecl136II GAGCTC 2 cut(s) 1504, 3394
Eco130I CCWWGG 3 cut(s) 2790, 3985, 4088
Eco147I AGGCCT 1 cut(s) 4272
Eco24I GRGCYC 5 cut(s) 1506, 1748, 2550, 3396, 4150
Eco32I GATATC 1 cut(s) 2316
Eco47I GGWCC 2 cut(s) 1094, 3263
Eco53kI GAGCTC 2 cut(s) 1504, 3394
Eco57I CTGAAG 5 cut(s) 1157, 1205, 1358, 2618, 3081
Eco81I CCTNAGG 1 cut(s) 1962
Eco88I CYCGRG 3 cut(s) 44, 97, 3315
Eco91I GGTNACC 1 cut(s) 3911
EcoICRI GAGCTC 2 cut(s) 1504, 3394
EcoNI CCTNNNNNAGG 2 cut(s) 1376, 1597
EcoO109I RGGNCCY 1 cut(s) 4147
EcoO65I GGTNACC 1 cut(s) 3911
EcoRI GAATTC 1 cut(s) 2213
EcoRII CCWGG 4 cut(s) 541, 2668, 3481, 4197
EcoRV GATATC 1 cut(s) 2316
EcoT14I CCWWGG 3 cut(s) 2790, 3985, 4088
EcoT22I ATGCAT 1 cut(s) 3501
EcoT38I GRGCYC 5 cut(s) 1506, 1748, 2550, 3396, 4150
ErhI CCWWGG 3 cut(s) 2790, 3985, 4088
Esp3I CGTCTC 1 cut(s) 271
FalI AAGNNNNNCTT 5 cut(s) 1615, 1647, 2600, 2632, 4331
FaqI GGGAC 4 cut(s) 887, 963, 1427, 3258
FauI CCCGC 5 cut(s) 639, 1478, 2604, 2693, 3105
FbaI TGATCA 1 cut(s) 1086
FblI GTMKAC 1 cut(s) 2263
FriOI GRGCYC 5 cut(s) 1506, 1748, 2550, 3396, 4150
FspI TGCGCA 2 cut(s) 3411, 3622
GlaI GCGC 9 cut(s) 666, 1009, 2223, 2326, 2897, 3029, 3111, 3411, 3622
GsaI CCCAGC 1 cut(s) 1880
GsuI CTGGAG 1 cut(s) 3595
HaeII RGCGCY 2 cut(s) 668, 2225
HaeIII GGCC 9 cut(s) 630, 1056, 1297, 2401, 2668, 2705, 3824, 4148, 4272
HhaI GCGC 9 cut(s) 667, 1010, 2224, 2327, 2898, 3030, 3112, 3412, 3623
Hin1I GRCGYC 1 cut(s) 1477
Hin6I GCGC 9 cut(s) 665, 1008, 2222, 2325, 2896, 3028, 3110, 3410, 3621
HinP1I GCGC 9 cut(s) 665, 1008, 2222, 2325, 2896, 3028, 3110, 3410, 3621
HincII GTYRAC 5 cut(s) 1071, 2209, 2435, 2587, 4008
HindII GTYRAC 5 cut(s) 1071, 2209, 2435, 2587, 4008
HindIII AAGCTT 2 cut(s) 3543, 3973
HpaI GTTAAC 1 cut(s) 2209
HphI GGTGA 6 cut(s) 170, 421, 716, 790, 2356, 3465
Hpy188I TCNGA 9 cut(s) 750, 1617, 2647, 3231, 3391, 3597, 3638, 4208, 4337
Hpy99I CGWCG 1 cut(s) 424
HpyCH4IV ACGT 7 cut(s) 653, 915, 1437, 1477, 2183, 3762, 4017
HpySE526I ACGT 7 cut(s) 653, 915, 1437, 1477, 2183, 3762, 4017
Hsp92I GRCGYC 1 cut(s) 1477
HspAI GCGC 9 cut(s) 665, 1008, 2222, 2325, 2896, 3028, 3110, 3410, 3621
Kpn2I TCCGGA 2 cut(s) 910, 1698
KpnI GGTACC 2 cut(s) 2757, 2788
KroI GCCGGC 1 cut(s) 2143
KroNI GCCGGC 1 cut(s) 2145
Ksp22I TGATCA 1 cut(s) 1086
KspAI GTTAAC 1 cut(s) 2209
LmnI GCTCC 3 cut(s) 66, 1501, 2643
LweI GCATC 8 cut(s) 537, 582, 910, 1186, 1531, 3097, 3632, 4049
MaeII ACGT 7 cut(s) 653, 915, 1437, 1477, 2183, 3762, 4017
MaeIII GTNAC 6 cut(s) 713, 1491, 1952, 2650, 3367, 3911
MbiI CCGCTC 2 cut(s) 227, 3775
MfeI CAATTG 2 cut(s) 3464, 3739
MflI RGATCY 3 cut(s) 74, 907, 1027
MhlI GDGCHC 8 cut(s) 1346, 1506, 1748, 2497, 2550, 3324, 3396, 4150
MlsI TGGCCA 1 cut(s) 1056
MluI ACGCGT 1 cut(s) 3861
MluNI TGGCCA 1 cut(s) 1056
MlyI GAGTC 5 cut(s) 41, 260, 1696, 1755, 2703
MmeI TCCRAC 2 cut(s) 1180, 1948
Mox20I TGGCCA 1 cut(s) 1056
Mph1103I ATGCAT 1 cut(s) 3501
MroI TCCGGA 2 cut(s) 910, 1698
MroNI GCCGGC 1 cut(s) 2143
MroXI GAANNNNTTC 3 cut(s) 1514, 1611, 3583
MscI TGGCCA 1 cut(s) 1056
MslI CAYNNNNRTG 3 cut(s) 1539, 3047, 3080
Msp20I TGGCCA 1 cut(s) 1056
MspA1I CMGCKG 4 cut(s) 1880, 2078, 2700, 3119
MspCI CTTAAG 1 cut(s) 983
MunI CAATTG 2 cut(s) 3464, 3739
Mva1269I GAATGC 3 cut(s) 508, 3996, 4164
MvaI CCWGG 4 cut(s) 543, 2670, 3483, 4199
MvnI CGCG 3 cut(s) 2327, 3112, 3863
NaeI GCCGGC 1 cut(s) 2145
NciI CCSGG 9 cut(s) 606, 636, 1790, 2394, 2707, 3241, 3316, 3317, 4075
NgoMIV GCCGGC 1 cut(s) 2143
NlaIV GGNNCC 7 cut(s) 1896, 2704, 2755, 2786, 3321, 3855, 4148
NsbI TGCGCA 2 cut(s) 3411, 3622
NsiI ATGCAT 1 cut(s) 3501
NspI RCATGY 1 cut(s) 3958
NspV TTCGAA 1 cut(s) 85
PaeR7I CTCGAG 2 cut(s) 44, 97
PagI TCATGA 1 cut(s) 3129
PceI AGGCCT 1 cut(s) 4272
PcsI WCGNNNNNNNCGW 1 cut(s) 1443
PctI GAATGC 3 cut(s) 508, 3996, 4164
PdiI GCCGGC 1 cut(s) 2145
PdmI GAANNNNTTC 3 cut(s) 1514, 1611, 3583
PfeI GAWTC 8 cut(s) 393, 442, 1785, 2870, 2915, 3226, 3386, 3425
PflMI CCANNNNNTGG 2 cut(s) 498, 3482
PfoI TCCNGGA 2 cut(s) 1788, 2392
Ple19I CGATCG 2 cut(s) 2877, 4035
PleI GAGTC 5 cut(s) 40, 259, 1696, 1755, 2702
PpsI GAGTC 5 cut(s) 40, 259, 1696, 1755, 2702
PshBI ATTAAT 1 cut(s) 2687
PsiI TTATAA 1 cut(s) 3342
Psp124BI GAGCTC 2 cut(s) 1506, 3396
Psp1406I AACGTT 1 cut(s) 4017
Psp6I CCWGG 4 cut(s) 541, 2668, 3481, 4197
PspEI GGTNACC 1 cut(s) 3911
PspFI CCCAGC 1 cut(s) 1876
PspGI CCWGG 4 cut(s) 541, 2668, 3481, 4197
PspN4I GGNNCC 7 cut(s) 1896, 2704, 2755, 2786, 3321, 3855, 4148
PspOMI GGGCCC 1 cut(s) 4146
PspPI GGNCC 8 cut(s) 629, 1094, 1295, 2703, 3263, 3822, 4146, 4147
PspXI VCTCGAGB 2 cut(s) 44, 97
PsrI GAACNNNNNNTAC 2 cut(s) 3554, 3586
PstI CTGCAG 3 cut(s) 190, 378, 2512
PsuI RGATCY 3 cut(s) 74, 907, 1027
PvuI CGATCG 2 cut(s) 2877, 4035
PvuII CAGCTG 3 cut(s) 1880, 2078, 3119
RsaI GTAC 7 cut(s) 2083, 2271, 2574, 2755, 2786, 3299, 3843
RsaNI GTAC 7 cut(s) 2082, 2270, 2573, 2754, 2785, 3298, 3842
RseI CAYNNNNRTG 3 cut(s) 1539, 3047, 3080
SacI GAGCTC 2 cut(s) 1506, 3396
Sau96I GGNCC 8 cut(s) 629, 1094, 1295, 2703, 3263, 3822, 4146, 4147
ScaI AGTACT 2 cut(s) 2271, 3299
SchI GAGTC 5 cut(s) 41, 260, 1696, 1755, 2703
SduI GDGCHC 8 cut(s) 1346, 1506, 1748, 2497, 2550, 3324, 3396, 4150
SfaNI GCATC 8 cut(s) 537, 582, 910, 1186, 1531, 3097, 3632, 4049
SfcI CTRYAG 5 cut(s) 186, 374, 1074, 2508, 3949
Sfr274I CTCGAG 2 cut(s) 44, 97
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 2 cut(s) 1094, 3263
SlaI CTCGAG 2 cut(s) 44, 97
SmaI CCCGGG 1 cut(s) 3317
SmiMI CAYNNNNRTG 3 cut(s) 1539, 3047, 3080
SmlI CTYRAG 7 cut(s) 44, 97, 692, 983, 1810, 3280, 3870
SmoI CTYRAG 7 cut(s) 44, 97, 692, 983, 1810, 3280, 3870
SpeI ACTAGT 2 cut(s) 2489, 3844
SseBI AGGCCT 1 cut(s) 4272
SspI AATATT 3 cut(s) 2094, 3609, 3723
SstI GAGCTC 2 cut(s) 1506, 3396
StuI AGGCCT 1 cut(s) 4272
StyI CCWWGG 3 cut(s) 2790, 3985, 4088
TaiI ACGT 7 cut(s) 656, 918, 1440, 1480, 2186, 3765, 4020
TaqII GACCGA 1 cut(s) 1432
TatI WGTACW 3 cut(s) 2269, 2572, 3297
TauI GCSGC 2 cut(s) 2404, 4171
TfiI GAWTC 8 cut(s) 393, 442, 1785, 2870, 2915, 3226, 3386, 3425
TscAI CASTG 4 cut(s) 595, 3144, 3273, 3923
TspGWI ACGGA 2 cut(s) 1773, 4170
TspMI CCCGGG 1 cut(s) 3315
TspRI CASTG 4 cut(s) 595, 3144, 3273, 3923
Van91I CCANNNNNTGG 2 cut(s) 498, 3482
Vha464I CTTAAG 1 cut(s) 983
VneI GTGCAC 1 cut(s) 2493
VpaK11BI GGWCC 2 cut(s) 1094, 3263
VspI ATTAAT 1 cut(s) 2687
XagI CCTNNNNNAGG 2 cut(s) 1376, 1597
XapI RAATTY 5 cut(s) 1316, 1607, 1627, 2213, 2933
XbaI TCTAGA 1 cut(s) 1388
XceI RCATGY 1 cut(s) 3958
XcmI CCANNNNNNNNNTGG 2 cut(s) 658, 3525
XhoI CTCGAG 2 cut(s) 44, 97
XmaI CCCGGG 1 cut(s) 3315
XmaJI CCTAGG 1 cut(s) 3985
XmiI GTMKAC 1 cut(s) 2263
XmnI GAANNNNTTC 3 cut(s) 1514, 1611, 3583
ZraI GACGTC 1 cut(s) 1478
ZrmI AGTACT 2 cut(s) 2271, 3299
Zsp2I ATGCAT 1 cut(s) 3501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.