RchiOBHm_Chr4g0427141
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000472
Physical Location & Seq
Forward (+)
52421362 .. 52428640
7279 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39609

Sequence Viewer

Length: 4287 bp
ATGGAGCTAACACAAGTTAAGAGAGACGTCCACTCATCGTTTCGACACCAAGCTTCGAGCTACTCAATCAAAGAGGAGGATGAGGAAACTCAGCTGCAGTGGGCTGCCATTGAGAGATTGCCTACATCCAGAAGGCTGAGGACCTCACTTTTCGACCTCGGTGATAGCGAAAATGGAAAAACCAGTGGCAAAGAGTGTGCAGGGAAGAAGGTGGTTGATGTTACCAAGTTGGGAGCAGATGAGAGGCATCTTTTCATTGAGAAGATCATAAAGCACATTGAGCATGATAATCTGAGGCTGCTACAAAAAATGAGAGAAAGGATAGACAGAGTGAATGTGAAATTGCCAACTGTGGAGGTGAGGTACAAGAGTTTGTGTGTGGAAGCCGAGTGTGAAGTAGTACAAGGAAAGCCGCTCCCGACGCTGTGGAACTCCCTTCTAAGCTTGTTATCAGTAATGTGGTGCAAGTCTCAAGATGCAAAGATTAGCGTTCTCACAGATGTCAGTGGCGTCATCAAACCTTCAAGGCTTACTCTCCTTCTTGGTCCCCCGGGGTGTGGTAAAACCACCTTCTTATTGGCACTTGCCGGAAAACTGGATAAATCCCTGAAGGTTGCAGGGGAGATTTCATACAATGGTTACAAGCTAGATGAGTTTGTTCCTCAAAAAACGTCAGCGTACATAAGCCAACACGACCTTCACGTACCTGAGATGACTGTAAGAGAAACAATCGAGTTTTCAGCCCGCTGTCAAGGTGTTGGAAGCAGAGCTGATATAATGCTAGAGGTTAGCAGGAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCAATCTCAGTTGAAGGACAAAAGAAAAACCTCCAAACTGACTATGTTTTGAAGATGCTAGGACTAGATATCTGCAGTGACACAATGGTTGGTGATGCATTACAAAGAGGTATTTCGGGTGGCCAAAAGAAAAGGCTGACAACAGGAGAGATGATTGTCGGTCCCACAAAAGCACTATTTATGGATGAAATATCAACTGGATTAGACAGCTCTACGACTTTTCAGATAGTCACATATCTGCAGCAGTTGGTGCACATAACAGATACAACTGCATTGGTGTCACTTCTACAACCAGCACCTGAGACATTCGATTTATTTGATGATGTGATACTAATGGCAGAGGGGAAGATAGTTTACCATGGTCCTCGGAGTCATGCACTTCAGTTTTTCGAAGATTGTGGTTTTAAGTGCCCACCAAGAAAGGGTGCTGCAGATTATCTTCAGGAGGTAATCTCAAAGAAGGATCAAGCACAATACTGGAAGCATGATAACATTCCCTATGATTATGTTTCTGTGGACAAATTCTCTCAGCTTTTCAGAGCAAGTTACTTGGGAAAGAAGTTAATTGATGAGCTCTCAAAACCATATGAGAAATCACCGGGCCAGGATAAGGCTTTATCATTTAGCATCTACTCTGTCAGAAAATGGGAATTGTTCAAAGCTTGCATGGGTAGAGAGCTGCTTCTTATGAAACGAAATTCCTTTGTTTATGTATTCAAAACAGCGCAGCTTGTCATCACTGCACTTTTGACAACGACAGTATTCATACGTACTCAGATGGATGTGGATTTGACAAGTGCAAATTATTTTATGGGTGCATTGTTCTATACACTTGTGAGACTTATGACCAATGGAGTTGCAGAACTGTCCTTGACTATCACTAGACTACCAGTGGTTGATAAGCAAAGAGCCTTCTATCTTTATCCAGCATGGTCCTATTCAATTCCAGCCTCTCTCCTGAAGATTCCATTTTCACTGAGTGATGCGGTGTTGTGGACAGCAATAACTTACTATGGTGTTGGTTATAGCCCTGAAATAAAAAGGTTCTTCTGCCAGCTCCTTGTGCTGTTTGCTCTGCATCTTGCATCAACATCCATGTGTCGTTTGATTGCAGTAATTTTCCGATCCATGGTTGTTGCAACAACTATTGGTACTTTAATCTTGGTACTAATGTTTGTATTTGGAGGCTTCATTTTGCCACCACCCTCATTACCTGTTTGGTTGAAGTGGGGATTCTGGTGTTCTCCTATGACTTATGGGGAAATAGCTGCAAGTCTGAATGAATTCCGTGCTCCTCGATGGCAAAAGGTTTCGAAAGGAAACACAACCTTGGGGAATGAAATTCTAACCAGTCATGGTTTGAACTTTGGTAGCTACTTCTACTGGATATCAGTAGGGGCTTTATTCGGGTTCACAGCTATTTTCGATCTTGGATTTGTTTTAGCCTTAACTTACTTAAAATCTCCAAAGATGTCTCGTGCTATTATTTCGAAAAAAAGATTATCTCAACTCAAAGGACAAGATTCTTGGAACAAGACCGGTGCAAAGTCAGCTAATGTATCAACTCCAGCTGATTTTTCCCAAACCATGGAAGAAACAGGGAAGATGGTTCTGCCATTTGAGCCGCTGACAATCTCATTTAAGGATGTGCAGTACAGTGTTGACATCCCACCGGAAATGAAAAGGCACAGTTTCGATCAGAAAAAACATCAGCTGCTTAAAGATATTACAGGAGCATTTAGGCCGGGAGTTCTTACAGCATTGATGGGAGTCAGTGGGGCTGGGAAAACAACTCTCATGGATGTTCTTTCGGGAAGGAAAACTGGAGGCACTATTGAAGGAGATATAAGAATAGGAGGCTATCCCAAAGTCCAGAAGACATTCGCTAGAATATCAGGTTACTGTGAACAATTTGATATACATTCTCCATACATCACAGTAGGAGAGTCGGTTATGTTTTCAGCTTGGTTGAGGTTGCCACCCGAAATTGATCAAGACACAAAAGCTAAATTTGTAGAAGAAGTTATTGAAACAATTGAATTGGAGGATATAAGAGATTCTTTAGTTGGCATTCCTGGCCAAAGTGGCCTATCAACCGAACAGCGCAAAAGGCTAACAATTGCAGTTGAGCTTGTTTCCAATCCATCAATAATATTTATGGATGAACCTACATCAGGACTAGATGCCAGAGCAGCGGCAATTGTCATGCGTGCAGTGAAGAATGTAGTTGCCACAGGAAGAACAACTATTTGCACAATCCACCAACCTAGCATTGATATCTTTGAGGCTTTTGATGAGTTAATTCTGATGAAAACGGGAGGGCAAATTATCTATTCTGGAAGTCTGGGCCATCATTCGAGTAATCTCATTGAATATTTTGAGGGTATTCCTGGTGTACCAAAGATCAAAGATAACTATAACCCCGCAACATGGATGTTAGAAGTTACTTCCTCTTCAGTAGAAGCAGAACTCGGTTTAGATTTTGCGAACATTTATAAAGAATCTACTCTGTATAAAGACAGAGTTGAATTGGTGAGACAGATAAGTAAACCAAAGCCAGGTTCAAGAGCTTTGCAATTTTCCACCCAATTTCCACAAAATAGCTGGGTGCAGTTTAGGGCATGCTTATGGAAACAACACTTATCCTACTGGAGAAGTCCTGAATACAATCTAGCACGTTTCATGTTCATGACTGTTGCCTCAGTGTTGTTTGGTGCAATCTTCTGGCAAAAGGGGAAGGAAATAAATAATGAGCAGGATTTGCTGACTATACTTGGGTCCATGTACATTGCTGTAATATTCCTGGGAATAAACAATTGTTCAACAGTTCTTCCTTATGTGGCAACTGAGCGCACCGTTTTGTACCGCGAAAAATTTGCTGGGATGTACTCATCAAAGGCTTATTCCTTTGCACAGGTGGCCATGGAAATACCTTATACAATGTTGCAAGCAATTTTATATGTGGTCATTACATATCCTACGATAGGCTACTATTGGACTGCTTCCAAGGTTTTTTGGTACTTCTATGCAACCTTCTGTACATTTCTATACTTTGTATACCTTGGGATGTTGTTAGTTTCTTTGAGCTCAGACATGGAAGTAGCTTCGATATTGGCCACTGCAATCTACACCATATTGAATCTTTTCTCCGGCTTCCTCATGCCTGGACCGAAAATTCCGAAGTGGTGGATTTGGTGCTACTGGATCTGTCCTACATCATGGTCACTAAATGGCCTCCTGACTTCACAATATGGAGACATGGACAAAGAGATATTAATTTTTGGAGAGCATAAAACAGTTGCTTCCTTCGTACAAGATTATTATGGTTTTCATCATGATCTTTTACCCCTTGTGGCTATTGCTCTGATTACCTTCCCAATTGCTTTTGCTTTTCTCTTTGCCTATTTTATAGGGAGATTAAATTTCCAAAGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1428

Amino Acids

160.94

Weight (kDa)

8.48

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 165 - 346 3e-16 ABC transporter
ABC2_membrane PF01061 501 - 712 3.4e-45 ABC-2 type transporter
PDR_assoc PF08370 717 - 779 4.9e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 856 - 1008 1.3e-19 ABC transporter
ABC2_membrane PF01061 1154 - 1367 9.2e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 1204 - 1412 6.1e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3345
AatII GACGTC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 2437
AccBSI CCGCTC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 3906
AccII CGCG 1 cut(s) 3717
AciI CCGC 7 cut(s) 413, 745, 1835, 2474, 3044, 3273, 3715
AclWI GGATC 4 cut(s) 818, 1320, 1968, 4061
AcoI YGGCCR 4 cut(s) 970, 2926, 3768, 3963
AcsI RAATTY 8 cut(s) 1370, 1546, 2132, 2190, 2858, 3722, 4023, 4270
AcuI CTGAAG 5 cut(s) 629, 1214, 1274, 1829, 3288
AcyI GRCGYC 2 cut(s) 27, 510
AdeI CACNNNGTG 1 cut(s) 1829
AfiI CCNNNNNNNGG 9 cut(s) 557, 1271, 1459, 1978, 2437, 3023, 3279, 3407, 3833
AgeI ACCGGT 1 cut(s) 2387
AjnI CCWGG 6 cut(s) 1452, 2923, 3238, 3406, 3651, 4012
AjuI GAANNNNNNNTTGG 4 cut(s) 681, 713, 3394, 3426
Alw21I GWGCWC 4 cut(s) 1104, 1425, 2143, 3938
Alw26I GTCTC 7 cut(s) 18, 474, 1145, 1681, 2328, 3379, 4098
Alw44I GTGCAC 1 cut(s) 1100
AlwI GGATC 4 cut(s) 818, 1320, 1968, 4061
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 9 cut(s) 970, 1450, 2591, 2926, 2935, 3196, 3768, 3963, 4081
ApaLI GTGCAC 1 cut(s) 1100
ApoI RAATTY 8 cut(s) 1370, 1546, 2132, 2190, 2858, 3722, 4023, 4270
AseI ATTAAT 1 cut(s) 4124
AsiGI ACCGGT 1 cut(s) 2387
Asp700I GAANNNNTTC 3 cut(s) 2132, 2729, 3992
AspLEI GCGC 3 cut(s) 1576, 2955, 3702
AspS9I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3196, 3627, 4016
AsuC2I CCSGG 4 cut(s) 551, 552, 1449, 2595
AsuHPI GGTGA 5 cut(s) 173, 370, 953, 1437, 3394
AsuII TTCGAA 3 cut(s) 1239, 2162, 2339
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3627, 4016
BaeGI GKGCMC 2 cut(s) 1104, 1262
BaeI ACNNNNGTAYC 4 cut(s) 355, 388, 2006, 2039
BalI TGGCCA 4 cut(s) 972, 2928, 3770, 3965
BanII GRGCYC 2 cut(s) 1425, 3938
BarI GAAGNNNNNNTAC 2 cut(s) 1187, 1219
BauI CACGAG 1 cut(s) 2325
BbsI GAAGAC 1 cut(s) 2732
Bbv12I GWGCWC 4 cut(s) 1104, 1425, 2143, 3938
BbvCI CCTCAGC 1 cut(s) 137
BccI CCATC 6 cut(s) 1621, 2142, 2449, 2608, 3001, 3207
BcgI CGANNNNNNTGC 2 cut(s) 3707, 3741
BciT130I CCWGG 6 cut(s) 1454, 2925, 3240, 3408, 3653, 4014
BclI TGATCA 1 cut(s) 2839
BcnI CCSGG 4 cut(s) 551, 552, 1449, 2595
BcoDI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2328, 3379, 4098
BfaI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2736, 3029, 3117, 3521
BfmI CTRYAG 4 cut(s) 95, 922, 1088, 1278
BglI GCCNNNNNGGC 1 cut(s) 2934
Bme18I GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3627, 4016
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3196, 3627, 4016
BmiI GGNNCC 3 cut(s) 547, 1012, 3628
BmsI GCATC 9 cut(s) 256, 466, 894, 934, 1485, 1822, 1936, 1943, 3022
BpiI GAAGAC 1 cut(s) 2732
BplI GAGNNNNNCTC 2 cut(s) 1286, 1318
BpmI CTGGAG 3 cut(s) 2400, 2694, 3520
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 3 cut(s) 1239, 2162, 2339
BpuEI CTTGAG 1 cut(s) 456
BpuMI CCSGG 4 cut(s) 551, 552, 1449, 2595
BsaAI YACGTR 2 cut(s) 703, 1619
BsaHI GRCGYC 2 cut(s) 27, 510
BsaWI WCCGGW 2 cut(s) 2387, 2521
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 2784, 2814
Bsc4I CCNNNNNNNGG 9 cut(s) 557, 1271, 1459, 1978, 2437, 3023, 3279, 3407, 3833
Bse118I RCCGGY 1 cut(s) 2387
Bse3DI GCAATG 1 cut(s) 3636
BseBI CCWGG 6 cut(s) 1454, 2925, 3240, 3408, 3653, 4014
BseLI CCNNNNNNNGG 9 cut(s) 557, 1271, 1459, 1978, 2437, 3023, 3279, 3407, 3833
BseMI GCAATG 1 cut(s) 3636
BseRI GAGGAG 2 cut(s) 89, 2133
BseSI GKGCMC 2 cut(s) 1104, 1262
BseYI CCCAGC 3 cut(s) 2630, 3453, 3728
BsgI GTGCAG 5 cut(s) 219, 1575, 2519, 3081, 3479
Bsh1236I CGCG 1 cut(s) 3717
BshFI GGCC 9 cut(s) 972, 1452, 2593, 2928, 2937, 3198, 3770, 3965, 4083
BshTI ACCGGT 1 cut(s) 2387
BsiHKAI GWGCWC 4 cut(s) 1104, 1425, 2143, 3938
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 7 cut(s) 551, 588, 1448, 2388, 2522, 2594, 3999
BslFI GGGAC 2 cut(s) 531, 996
BslI CCNNNNNNNGG 9 cut(s) 557, 1271, 1459, 1978, 2437, 3023, 3279, 3407, 3833
BsmAI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2328, 3379, 4098
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 531, 996
BsmI GAATGC 1 cut(s) 2919
BsnI GGCC 9 cut(s) 972, 1452, 2593, 2928, 2937, 3198, 3770, 3965, 4083
BsoBI CYCGRG 1 cut(s) 550
Bsp119I TTCGAA 3 cut(s) 1239, 2162, 2339
Bsp1286I GDGCHC 5 cut(s) 1104, 1262, 1425, 2143, 3938
Bsp1407I TGTACA 2 cut(s) 3633, 3887
Bsp19I CCATGG 4 cut(s) 1207, 1977, 2436, 3771
BspACI CCGC 7 cut(s) 413, 745, 1835, 2474, 3044, 3273, 3715
BspANI GGCC 9 cut(s) 972, 1452, 2593, 2928, 2937, 3198, 3770, 3965, 4083
BspFNI CGCG 1 cut(s) 3717
BspHI TCATGA 2 cut(s) 3537, 4183
BspLI GGNNCC 3 cut(s) 547, 1012, 3628
BspMAI CTGCAG 4 cut(s) 99, 926, 1092, 1282
BspPI GGATC 4 cut(s) 818, 1320, 1968, 4061
BspT104I TTCGAA 3 cut(s) 1239, 2162, 2339
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 3636
BsrFI RCCGGY 1 cut(s) 2387
BsrGI TGTACA 2 cut(s) 3633, 3887
BssAI RCCGGY 1 cut(s) 2387
BssNAI GTATAC 1 cut(s) 3907
BssNI GRCGYC 2 cut(s) 27, 510
BssSI CACGAG 1 cut(s) 2325
BssT1I CCWWGG 7 cut(s) 1207, 1977, 2178, 2436, 3771, 3855, 3910
Bst1107I GTATAC 1 cut(s) 3907
Bst2BI CACGAG 1 cut(s) 2325
Bst2UI CCWGG 6 cut(s) 1454, 2925, 3240, 3408, 3653, 4014
Bst6I CTCTTC 1 cut(s) 3307
BstACI GRCGYC 2 cut(s) 27, 510
BstAPI GCANNNNNTGC 2 cut(s) 1099, 3610
BstAUI TGTACA 2 cut(s) 3633, 3887
BstBAI YACGTR 2 cut(s) 703, 1619
BstBI TTCGAA 3 cut(s) 1239, 2162, 2339
BstC8I GCNNGC 6 cut(s) 745, 1513, 1904, 3060, 3472, 3798
BstDSI CCRYGG 4 cut(s) 1207, 1977, 2436, 3771
BstENI CCTNNNNNAGG 2 cut(s) 3021, 3831
BstFNI CGCG 1 cut(s) 3717
BstHHI GCGC 3 cut(s) 1576, 2955, 3702
BstMAI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2328, 3379, 4098
BstNI CCWGG 6 cut(s) 1454, 2925, 3240, 3408, 3653, 4014
BstNSI RCATGY 1 cut(s) 3474
BstSFI CTRYAG 4 cut(s) 95, 922, 1088, 1278
BstSLI GKGCMC 2 cut(s) 1104, 1262
BstSNI TACGTA 1 cut(s) 1619
BstUI CGCG 1 cut(s) 3717
BstV2I GAAGAC 1 cut(s) 2732
BstX2I RGATCY 1 cut(s) 4053
BstYI RGATCY 1 cut(s) 4053
BstZ17I GTATAC 1 cut(s) 3907
BsuRI GGCC 9 cut(s) 972, 1452, 2593, 2928, 2937, 3198, 3770, 3965, 4083
BtgI CCRYGG 4 cut(s) 1207, 1977, 2436, 3771
BtsI GCAGTG 5 cut(s) 104, 931, 1587, 3069, 3966
Cac8I GCNNGC 6 cut(s) 745, 1513, 1904, 3060, 3472, 3798
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 2 cut(s) 3537, 4183
CfoI GCGC 3 cut(s) 1576, 2955, 3702
Cfr10I RCCGGY 1 cut(s) 2387
Cfr13I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3196, 3627, 4016
Cfr9I CCCGGG 1 cut(s) 550
CseI GACGC 2 cut(s) 430, 499
CspAI ACCGGT 1 cut(s) 2387
DraIII CACNNNGTG 1 cut(s) 1829
EaeI YGGCCR 4 cut(s) 970, 2926, 3768, 3963
Eam1104I CTCTTC 1 cut(s) 3307
EarI CTCTTC 1 cut(s) 3307
Ecl136II GAGCTC 2 cut(s) 1423, 3936
Eco105I TACGTA 1 cut(s) 1619
Eco130I CCWWGG 7 cut(s) 1207, 1977, 2178, 2436, 3771, 3855, 3910
Eco24I GRGCYC 2 cut(s) 1425, 3938
Eco32I GATATC 3 cut(s) 919, 2238, 3127
Eco47I GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3627, 4016
Eco53kI GAGCTC 2 cut(s) 1423, 3936
Eco57I CTGAAG 5 cut(s) 629, 1214, 1274, 1829, 3288
Eco88I CYCGRG 1 cut(s) 550
EcoICRI GAGCTC 2 cut(s) 1423, 3936
EcoNI CCTNNNNNAGG 2 cut(s) 3021, 3831
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 2132
EcoRII CCWGG 6 cut(s) 1452, 2923, 3238, 3406, 3651, 4012
EcoRV GATATC 3 cut(s) 919, 2238, 3127
EcoT14I CCWWGG 7 cut(s) 1207, 1977, 2178, 2436, 3771, 3855, 3910
EcoT22I ATGCAT 1 cut(s) 949
EcoT38I GRGCYC 2 cut(s) 1425, 3938
ErhI CCWWGG 7 cut(s) 1207, 1977, 2178, 2436, 3771, 3855, 3910
Esp3I CGTCTC 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 2893, 2925
FaqI GGGAC 2 cut(s) 531, 996
FauI CCCGC 2 cut(s) 752, 3280
FauNDI CATATG 1 cut(s) 1435
FbaI TGATCA 1 cut(s) 2839
FblI GTMKAC 1 cut(s) 3906
FriOI GRGCYC 2 cut(s) 1425, 3938
FspBI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2736, 3029, 3117, 3521
GlaI GCGC 3 cut(s) 1575, 2954, 3701
GsaI CCCAGC 3 cut(s) 2634, 3457, 3732
GsuI CTGGAG 3 cut(s) 2400, 2694, 3520
HaeIII GGCC 9 cut(s) 972, 1452, 2593, 2928, 2937, 3198, 3770, 3965, 4083
HapII CCGG 7 cut(s) 551, 588, 1448, 2388, 2522, 2594, 3999
HgaI GACGC 2 cut(s) 430, 499
HhaI GCGC 3 cut(s) 1576, 2955, 3702
Hin1I GRCGYC 2 cut(s) 27, 510
Hin6I GCGC 3 cut(s) 1574, 2953, 3700
HinP1I GCGC 3 cut(s) 1574, 2953, 3700
HincII GTYRAC 1 cut(s) 2512
HindII GTYRAC 1 cut(s) 2512
HindIII AAGCTT 3 cut(s) 51, 442, 1509
HinfI GANTC 9 cut(s) 1219, 1813, 2082, 2372, 2619, 2795, 2906, 3350, 3988
HpaII CCGG 7 cut(s) 551, 588, 1448, 2388, 2522, 2594, 3999
HphI GGTGA 5 cut(s) 173, 370, 953, 1437, 3394
Hpy99I CGWCG 1 cut(s) 424
HpyCH4IV ACGT 5 cut(s) 27, 671, 702, 1618, 3526
HpySE526I ACGT 5 cut(s) 27, 671, 702, 1618, 3526
Hsp92I GRCGYC 2 cut(s) 27, 510
HspAI GCGC 3 cut(s) 1574, 2953, 3700
Ksp22I TGATCA 1 cut(s) 2839
LmnI GCTCC 6 cut(s) 4, 233, 420, 1911, 2146, 2582
LweI GCATC 9 cut(s) 256, 466, 894, 934, 1485, 1822, 1936, 1943, 3022
MaeI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2736, 3029, 3117, 3521
MaeII ACGT 5 cut(s) 27, 671, 702, 1618, 3526
MaeIII GTNAC 9 cut(s) 220, 638, 926, 1078, 1128, 1394, 2747, 3292, 4071
MbiI CCGCTC 1 cut(s) 415
MfeI CAATTG 5 cut(s) 2883, 2967, 3048, 3664, 4227
MflI RGATCY 1 cut(s) 4053
MhlI GDGCHC 5 cut(s) 1104, 1262, 1425, 2143, 3938
MlsI TGGCCA 4 cut(s) 972, 2928, 3770, 3965
MluNI TGGCCA 4 cut(s) 972, 2928, 3770, 3965
MlyI GAGTC 3 cut(s) 1228, 2628, 2804
MmeI TCCRAC 1 cut(s) 739
Mox20I TGGCCA 4 cut(s) 972, 2928, 3770, 3965
Mph1103I ATGCAT 1 cut(s) 949
MroXI GAANNNNTTC 3 cut(s) 2132, 2729, 3992
MscI TGGCCA 4 cut(s) 972, 2928, 3770, 3965
MslI CAYNNNNRTG 4 cut(s) 842, 1945, 3475, 3536
Msp20I TGGCCA 4 cut(s) 972, 2928, 3770, 3965
MspA1I CMGCKG 6 cut(s) 94, 747, 2420, 2476, 2563, 3044
MspI CCGG 7 cut(s) 551, 588, 1448, 2388, 2522, 2594, 3999
MunI CAATTG 5 cut(s) 2883, 2967, 3048, 3664, 4227
Mva1269I GAATGC 1 cut(s) 2919
MvaI CCWGG 6 cut(s) 1454, 2925, 3240, 3408, 3653, 4014
MvnI CGCG 1 cut(s) 3717
NciI CCSGG 4 cut(s) 551, 552, 1449, 2595
NcoI CCATGG 4 cut(s) 1207, 1977, 2436, 3771
NdeI CATATG 1 cut(s) 1435
NlaIV GGNNCC 3 cut(s) 547, 1012, 3628
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 4 cut(s) 926, 1078, 1128, 4071
NsiI ATGCAT 1 cut(s) 949
NspI RCATGY 1 cut(s) 3474
NspV TTCGAA 3 cut(s) 1239, 2162, 2339
PaeI GCATGC 1 cut(s) 3474
PagI TCATGA 2 cut(s) 3537, 4183
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 699
PctI GAATGC 1 cut(s) 2919
PdmI GAANNNNTTC 3 cut(s) 2132, 2729, 3992
PfeI GAWTC 6 cut(s) 1813, 2082, 2372, 2906, 3350, 3988
PflMI CCANNNNNTGG 1 cut(s) 2437
PinAI ACCGGT 1 cut(s) 2387
PleI GAGTC 3 cut(s) 1227, 2627, 2803
PpsI GAGTC 3 cut(s) 1227, 2627, 2803
Ppu21I YACGTR 2 cut(s) 703, 1619
PpuMI RGGWCCY 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 4124
PsiI TTATAA 1 cut(s) 3345
Psp124BI GAGCTC 2 cut(s) 1425, 3938
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 6 cut(s) 1452, 2923, 3238, 3406, 3651, 4012
PspFI CCCAGC 3 cut(s) 2630, 3453, 3728
PspGI CCWGG 6 cut(s) 1452, 2923, 3238, 3406, 3651, 4012
PspN4I GGNNCC 3 cut(s) 547, 1012, 3628
PspPI GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3196, 3627, 4016
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 4 cut(s) 99, 926, 1092, 1282
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 4053
PvuII CAGCTG 3 cut(s) 94, 2420, 2563
RseI CAYNNNNRTG 4 cut(s) 842, 1945, 3475, 3536
SacI GAGCTC 2 cut(s) 1425, 3938
Sau96I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3196, 3627, 4016
SchI GAGTC 3 cut(s) 1228, 2628, 2804
SduI GDGCHC 5 cut(s) 1104, 1262, 1425, 2143, 3938
SfaNI GCATC 9 cut(s) 256, 466, 894, 934, 1485, 1822, 1936, 1943, 3022
SfcI CTRYAG 4 cut(s) 95, 922, 1088, 1278
SfiI GGCCNNNNNGGCC 1 cut(s) 2934
SfuI TTCGAA 3 cut(s) 1239, 2162, 2339
SinI GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3627, 4016
SmaI CCCGGG 1 cut(s) 552
SmiMI CAYNNNNRTG 4 cut(s) 842, 1945, 3475, 3536
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
SnaBI TACGTA 1 cut(s) 1619
SphI GCATGC 1 cut(s) 3474
SsiI CCGC 7 cut(s) 413, 745, 1835, 2474, 3044, 3273, 3715
SspI AATATT 3 cut(s) 3003, 3224, 3648
SspMI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2736, 3029, 3117, 3521
SstI GAGCTC 2 cut(s) 1425, 3938
StyI CCWWGG 7 cut(s) 1207, 1977, 2178, 2436, 3771, 3855, 3910
TaiI ACGT 5 cut(s) 30, 674, 705, 1621, 3529
TaqII GACCGA 2 cut(s) 998, 4033
TatI WGTACW 5 cut(s) 400, 2502, 3633, 3735, 3887
TauI GCSGC 3 cut(s) 415, 2476, 3047
TfiI GAWTC 6 cut(s) 1813, 2082, 2372, 2906, 3350, 3988
TseFI GTSAC 4 cut(s) 926, 1078, 1128, 4071
Tsp45I GTSAC 4 cut(s) 926, 1078, 1128, 4071
TspGWI ACGGA 1 cut(s) 2126
TspMI CCCGGG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 2437
VneI GTGCAC 1 cut(s) 1100
VpaK11BI GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3627, 4016
VspI ATTAAT 1 cut(s) 4124
XagI CCTNNNNNAGG 2 cut(s) 3021, 3831
XapI RAATTY 8 cut(s) 1370, 1546, 2132, 2190, 2858, 3722, 4023, 4270
XceI RCATGY 1 cut(s) 3474
XcmI CCANNNNNNNNNTGG 2 cut(s) 574, 3450
XmaI CCCGGG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 3906
XmnI GAANNNNTTC 3 cut(s) 2132, 2729, 3992
XspI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2736, 3029, 3117, 3521
ZraI GACGTC 1 cut(s) 28
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.