Rw4G023680
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49438572 .. 49445902
7331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023680.1

Sequence Viewer

Length: 4386 bp
ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTAGCAGAGATCGGGAGGAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCGGTTGAGAGACTACCAACTTTTGAGAGGATCACATCAGCTTTGTTTGATGATCATGATGGCGCATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAACGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAAAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTTCACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTCCGGACATCACTGAACTAGTAGGTTCAAAAAAACGTGAAGCGAAGATAAGCATCATCAAAGATGTCAGTGGCATTATTAAGCCGGGAAGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCACTCTCAGGAAAGCTAAGCCATTCTCTCAAGGTTTCTGGCGAAATTAGTTACAATGGTTATAGACTTGAAGAATTTGTTCCAGAGAAAACCTCAGCCTATGTAGGCCAATATGATATGCATATTCCAGAGATCACTGTAAGGGAAACAGTAGATTTCTCTGCAGGCTGTCAAGGTGTAGGAAGCCGACCCGAGATTATGATGGAAGTTAGTAGAAGAGAAAAGCGGGCAGGAATAGTCCCGGATCCTGATGTAGATGCTTACATGAAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGATACTTGGCCTTGATATATGTGCTGACACGCTGGTTGGAGATCCCATAAGAAGAGGAATATCTGGTGGTCAAAAGAAAAGGTTAACTACAGGGGAGATGATTGTTGGACCTGCAAAAGCTGTTTTCATGGATGAAATATCTAATGGCTTAGATAGTTCGACAACTTTCCAAATTGTTTCTTGTCTTCAACATTTTGTGCATATAACAGATGCTACATCATTGATCTCACTTCTTCAGCCTGCACCAGAGACGTTCAATCTCTTTGATGATGTTCTCTTAATGGCAGAAGGGAAGATTGTGTATCATGGACCAAGAACTTCTATCCTCCAATTTTTTGAGGAGTGTGGATTTAAGTGTCCAGAAAGAAAAGGTGTTGCTGACTTCCTTCAGGAGGTCATCTCTAGAAAAGATCAAGCACAGTTTTGGGACGGCACAGAAAAACCATATAGCTACTTTTCTGTTGATCAGTTCATTGAGAAATTCAAGGATTGCCATCTTGGCAGGAAGCTAGATGTGGATCTCTCAGAGCCATTCGATAAGTCTCAAAGCCACAGAGATGCTCTATCCTTTAAAAGATACTCATTACCTAAATGGGAACTGTTTAAAGCATGCACAAGGAGGGAATTTCTTTTAATGAAAAGGAATTCTTTCATTTATGTTTTCAAATCAGTTCAGCTAGTCATCATTTCTTCTATAACGATGACTGTTTTCCTTCGAACTCAAATGGCTATTGACACGATCCATGAAAATTATTATATGGGTTCTTTGTTCTATGCACTTGTGATACTTCTTGTTGATGGATTCCCAGAATTGTCAATGACTGTCTCAAGAATTGTGGTTTTCTACAAACAGAAAGAGTTGTGTTTTTACCCTGCTTGGGCTTATGCTATCCCGGCTGCCATCCTAAAGGTTCCACTTTCGTTCTTGGAGGCTTTTGTTTGGACTGCTCTTACATACTATGTTATTGGTTACAGCCCTGAGGTTGGAAGGTTCTTCTGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCGATATCCATGTTTCGGTTTATTGCTTCAGTTTTCCAAACTGTCGGTCCTTCTATGACAGCTGGTGTTTTATCAATATTGTTTGTTATGTTATTTGGTGGCTTTGTTATGCCAAAGCCTTATATGCCAGTTTGGTTGAAGTGGGGATTTTGGGTGTCTCCTTTGACATATGGAGAAATAGGCATAACAGTTAATGAATTTCTGGCACCTCGGTGGGAAAAGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTTGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCCCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTAGATGCAGAGGGAGAATCCACCGGTGAACCTAAGACTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTTTGAGCATAACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTGTTCTGACAGCATTAATGGGTGTCAGCGGAGCTGGCAAAACAACTCTCATGGATGTTCTTTGTGGACGAAAAACCGGTGGTACAATTGAAGGAGAAATAAGAATCAGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACTGTGGAAGAATCAGTAGTATATTCTGCTTGGTTGCGGCTCCCGTCTCAGATTGATTCAAAGACCAAAGCAGAATTTGTAAACGAGGTTCTTGAAACTATTGAACTTGATCGGATTAAAGATTCCTTAGTCGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGGGCGGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGTTGCAACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAATTGGAGGACGCATAATCTATTCTGGCCAACTTGGACGGCACTCAAGCATGGTTATTGAGTATCTTGAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATCTGCAGAAGCTGACCTTGGTATAGATTTTGCACAAATTTATAGGGAATCGGCCTTGTATGAACATGACTCCTGCATTTTTGCTTGTAGAAAGAACAAGGAGTTAGTCAAGCAAGCGAGTTCACCGTCTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACTAAATGGTTGGGGGCAGTTCAAAGCGTGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCGTATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTGTTGTTTGGAACACTGTACTGGAATCAAGGAGAGAAAATAAATAACCAGCAGGAGCTCTTCAATGTGTTTGGTTCAATGTTCGTGGCAATAATCTTCTTTGGCATTTACAATAGCACAACAGTTCTACCATTTGTTGCAACGGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTCTCTTCATGGGCCTATTCATTCGCACAGGTCCTGGTTGAGGTTCCCTACTCATTCACTCAAGCAGTTCTTTATGTGGTCATCACATACCCGATGATTGGCTACCACTTGTCTGCCTATAAGGTATTTTGGTCATTCTATAGCATGTTCTGTGTACTACTATACTTCAACTACCTAGGGATGCTACTGGTGTCCTTGACACCAAATGTTCAAGTGGCTGCAATTGTGGCGTCATCTTCCTACACAATGCTGAATTTGTTTTCAGGGTTCATTGTTCCGGGACCACAAATCCCAAAGTGGTGGCTCTGGCTGTATTATTTGTCTCCTACATCATGGGCACTGAACGGAATGCTTACTTCGCAGTATGGAGATGTGCAGAAAGAAATCGTGGTGTTTGGAGAGACGAAAACTGTTGCTGCTTTTTTAGAAGATTACTTTGGGTATCACCACAACCTGTTAGGCCTTGTCGCTGTTGTTCAGCTTCTCTTTCCCATTGTGTTTGCTTCTCTGTTTGCATACTTCATTGGGAAACTAAACTTCCAAAAGAGATAG

Protein Analysis

1461

Amino Acids

164.49

Weight (kDa)

6.94

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 192 - 373 5.1e-17 ABC transporter
ABC2_membrane PF01061 527 - 738 9.9e-42 ABC-2 type transporter
PDR_assoc PF08370 743 - 801 2.5e-25 Plant PDR ABC transporter associated
ABC_tran PF00005 880 - 1032 2e-20 ABC transporter
ABC2_membrane PF01061 1187 - 1400 2.7e-57 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1099
AccB1I GGYRCC 2 cut(s) 2218, 3316
AccB7I CCANNNNNTGG 3 cut(s) 492, 3095, 3548
AccII CGCG 1 cut(s) 2280
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 8 cut(s) 182, 883, 2278, 2280, 2697, 2893, 3113, 3535
AclWI GGATC 8 cut(s) 218, 896, 909, 1016, 1506, 1714, 3622, 3635
AcoI YGGCCR 1 cut(s) 3259
AcuI CTGAAG 4 cut(s) 344, 1199, 1352, 2025
AcyI GRCGYC 1 cut(s) 4064
AfaI GTAC 6 cut(s) 955, 2426, 2571, 2752, 3671, 3990
AgeI ACCGGT 2 cut(s) 2486, 2744
AhlI ACTAGT 2 cut(s) 532, 2501
AjnI CCWGG 5 cut(s) 2389, 2665, 3310, 3505, 3867
AjuI GAANNNNNNNTTGG 4 cut(s) 3375, 3407, 4254, 4286
AleI CACNNNNGTG 1 cut(s) 2224
Alw21I GWGCWC 2 cut(s) 304, 3711
AlwI GGATC 8 cut(s) 218, 896, 909, 1016, 1506, 1714, 3622, 3635
AlwNI CAGNNNCTG 2 cut(s) 3386, 3868
Ama87I CYCGRG 1 cut(s) 848
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 9 cut(s) 622, 763, 927, 988, 2663, 3259, 3426, 3846, 4294
ApeKI GCWGC 5 cut(s) 179, 1877, 3116, 4052, 4250
ArsI GACNNNNNNTTYG 2 cut(s) 2044, 2076
AseI ATTAAT 1 cut(s) 2684
AsiGI ACCGGT 2 cut(s) 2486, 2744
Asp700I GAANNNNTTC 2 cut(s) 735, 1628
AspA2I CCTAGG 1 cut(s) 4009
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 7 cut(s) 623, 1088, 1289, 2060, 3846, 3865, 4115
AsuC2I CCSGG 5 cut(s) 600, 630, 899, 1874, 4113
AsuHPI GGTGA 4 cut(s) 2353, 2501, 3489, 4271
AsuII TTCGAA 2 cut(s) 85, 1696
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 848
AvaII GGWCC 5 cut(s) 1088, 1289, 2060, 3865, 4115
AvrII CCTAGG 1 cut(s) 4009
AxyI CCTNAGG 2 cut(s) 1959, 2787
BaeGI GKGCMC 2 cut(s) 3321, 4174
BalI TGGCCA 1 cut(s) 3261
BamHI GGATCC 2 cut(s) 901, 3627
BanI GGYRCC 2 cut(s) 2218, 3316
BanII GRGCYC 3 cut(s) 304, 2547, 3711
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 2 cut(s) 304, 3711
BbvCI CCTCAGC 1 cut(s) 751
BbvI GCAGC 5 cut(s) 166, 1864, 3103, 4039, 4237
BceAI ACGGC 4 cut(s) 326, 487, 1426, 3287
BciT130I CCWGG 5 cut(s) 2391, 2667, 3312, 3507, 3869
BciVI GTATCC 2 cut(s) 2793, 3317
BclI TGATCA 2 cut(s) 232, 1444
BcnI CCSGG 5 cut(s) 600, 630, 899, 1874, 4113
BcuI ACTAGT 2 cut(s) 532, 2501
BfaI CTAG 9 cut(s) 50, 273, 533, 1383, 1490, 1658, 2502, 3041, 4010
BfmI CTRYAG 4 cut(s) 819, 1068, 3378, 3973
BfuAI ACCTGC 1 cut(s) 1099
BfuI GTATCC 2 cut(s) 2793, 3317
BglI GCCNNNNNGGC 1 cut(s) 1479
BisI GCNGC 8 cut(s) 180, 1878, 2278, 2894, 3114, 3117, 4053, 4251
BlnI CCTAGG 1 cut(s) 4009
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 8 cut(s) 181, 1879, 2279, 2895, 3115, 3118, 4054, 4252
Bme18I GGWCC 5 cut(s) 1088, 1289, 2060, 3865, 4115
BmeT110I CYCGRG 1 cut(s) 848
BmgT120I GGNCC 7 cut(s) 623, 1088, 1289, 2060, 3846, 3865, 4115
BmiI GGNNCC 8 cut(s) 903, 1893, 2220, 2897, 3318, 3629, 3879, 4116
BmsI GCATC 8 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4005
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 1157
BplI GAGNNNNNCTC 4 cut(s) 734, 766, 1364, 1396
BpmI CTGGAG 1 cut(s) 2615
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 2 cut(s) 85, 1696
BpuEI CTTGAG 7 cut(s) 82, 288, 671, 1792, 3262, 3320, 3879
BpuMI CCSGG 5 cut(s) 600, 630, 899, 1874, 4113
Bsa29I ATCGAT 1 cut(s) 2015
BsaBI GATNNNNATC 3 cut(s) 566, 1473, 1497
BsaHI GRCGYC 1 cut(s) 4064
BsaJI CCNNGG 7 cut(s) 2222, 2278, 2364, 3310, 3311, 3391, 4009
BsaWI WCCGGW 3 cut(s) 517, 2486, 2744
Bse118I RCCGGY 2 cut(s) 2486, 2744
Bse1I ACTGG 3 cut(s) 2141, 3677, 4026
Bse21I CCTNAGG 2 cut(s) 1959, 2787
Bse3DI GCAATG 1 cut(s) 179
Bse8I GATNNNNATC 3 cut(s) 566, 1473, 1497
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 5 cut(s) 2391, 2667, 3312, 3507, 3869
BseCI ATCGAT 1 cut(s) 2015
BseDI CCNNGG 7 cut(s) 2222, 2278, 2364, 3310, 3311, 3391, 4009
BseGI GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 4020
BseJI GATNNNNATC 3 cut(s) 566, 1473, 1497
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 8 cut(s) 20, 678, 765, 1518, 1950, 2918, 3009, 3660
BseNI ACTGG 3 cut(s) 2141, 3677, 4026
BseRI GAGGAG 2 cut(s) 79, 1334
BseSI GKGCMC 2 cut(s) 3321, 4174
BseXI GCAGC 5 cut(s) 166, 1864, 3103, 4039, 4237
BsgI GTGCAG 2 cut(s) 1206, 4229
Bsh1236I CGCG 1 cut(s) 2280
BshFI GGCC 9 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3848, 4296
BshNI GGYRCC 2 cut(s) 2218, 3316
BshTI ACCGGT 2 cut(s) 2486, 2744
BshVI ATCGAT 1 cut(s) 2015
BsiHKAI GWGCWC 2 cut(s) 304, 3711
BsiHKCI CYCGRG 1 cut(s) 848
BslFI GGGAC 6 cut(s) 283, 881, 1421, 2383, 3591, 4128
BsmBI CGTCTC 5 cut(s) 1223, 2442, 2907, 3507, 4229
BsmFI GGGAC 6 cut(s) 283, 881, 1421, 2383, 3591, 4128
BsmI GAATGC 2 cut(s) 2657, 4188
BsnI GGCC 9 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3848, 4296
BsoBI CYCGRG 1 cut(s) 848
Bsp119I TTCGAA 2 cut(s) 85, 1696
Bsp1286I GDGCHC 5 cut(s) 304, 2547, 3321, 3711, 4174
Bsp13I TCCGGA 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 2569
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 8 cut(s) 182, 883, 2278, 2280, 2697, 2893, 3113, 3535
BspANI GGCC 9 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3848, 4296
BspCNI CTCAG 8 cut(s) 19, 677, 764, 1517, 1951, 2917, 3010, 3659
BspDI ATCGAT 1 cut(s) 2015
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 1 cut(s) 2280
BspHI TCATGA 2 cut(s) 235, 3228
BspLI GGNNCC 8 cut(s) 903, 1893, 2220, 2897, 3318, 3629, 3879, 4116
BspMAI CTGCAG 2 cut(s) 823, 3382
BspMI ACCTGC 1 cut(s) 1099
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 8 cut(s) 218, 896, 909, 1016, 1506, 1714, 3622, 3635
BspQI GCTCTTC 1 cut(s) 3716
BspT104I TTCGAA 2 cut(s) 85, 1696
BspT107I GGYRCC 2 cut(s) 2218, 3316
BsrDI GCAATG 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 2486, 2744
BsrGI TGTACA 1 cut(s) 2569
BsrI ACTGG 3 cut(s) 2141, 3677, 4026
BssAI RCCGGY 2 cut(s) 2486, 2744
BssECI CCNNGG 7 cut(s) 2222, 2278, 2364, 3310, 3311, 3391, 4009
BssNI GRCGYC 1 cut(s) 4064
BssT1I CCWWGG 3 cut(s) 2364, 3391, 4009
Bst2UI CCWGG 5 cut(s) 2391, 2667, 3312, 3507, 3869
Bst6I CTCTTC 4 cut(s) 868, 1027, 3716, 3844
BstACI GRCGYC 1 cut(s) 4064
BstAUI TGTACA 1 cut(s) 2569
BstBI TTCGAA 2 cut(s) 85, 1696
BstC8I GCNNGC 9 cut(s) 51, 476, 823, 885, 1221, 1591, 2704, 3489, 3571
BstDSI CCRYGG 1 cut(s) 2278
BstENI CCTNNNNNAGG 2 cut(s) 1370, 3872
BstF5I GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 4020
BstFNI CGCG 1 cut(s) 2280
BstHHI GCGC 1 cut(s) 245
BstMWI GCNNNNNNNGC 9 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113, 4061, 4192
BstNI CCWGG 5 cut(s) 2391, 2667, 3312, 3507, 3869
BstNSI RCATGY 2 cut(s) 1593, 3982
BstSFI CTRYAG 4 cut(s) 819, 1068, 3378, 3973
BstSLI GKGCMC 2 cut(s) 3321, 4174
BstUI CGCG 1 cut(s) 2280
BstV1I GCAGC 5 cut(s) 166, 1864, 3103, 4039, 4237
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 4 cut(s) 901, 1021, 1498, 3627
BstXI CCANNNNNNTGG 1 cut(s) 4134
BstYI RGATCY 4 cut(s) 901, 1021, 1498, 3627
Bsu15I ATCGAT 1 cut(s) 2015
Bsu36I CCTNAGG 2 cut(s) 1959, 2787
BsuI GTATCC 2 cut(s) 2793, 3317
BsuRI GGCC 9 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3848, 4296
BsuTUI ATCGAT 1 cut(s) 2015
BtgI CCRYGG 1 cut(s) 2278
BtsCI GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 4020
BtsI GCAGTG 1 cut(s) 3141
BtsIMutI CAGTG 9 cut(s) 414, 525, 589, 792, 2782, 3015, 3141, 3665, 4172
BveI ACCTGC 1 cut(s) 1099
Cac8I GCNNGC 9 cut(s) 51, 476, 823, 885, 1221, 1591, 2704, 3489, 3571
CaiI CAGNNNCTG 2 cut(s) 3386, 3868
CciI TCATGA 2 cut(s) 235, 3228
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 2 cut(s) 2486, 2744
Cfr13I GGNCC 7 cut(s) 623, 1088, 1289, 2060, 3846, 3865, 4115
Cfr42I CCGCGG 1 cut(s) 2281
ClaI ATCGAT 1 cut(s) 2015
CseI GACGC 2 cut(s) 3252, 4053
Csp6I GTAC 6 cut(s) 954, 2425, 2570, 2751, 3670, 3989
CspAI ACCGGT 2 cut(s) 2486, 2744
CspCI CAANNNNNGTGG 4 cut(s) 1797, 1832, 3717, 3752
CviQI GTAC 6 cut(s) 954, 2425, 2570, 2751, 3670, 3989
DraI TTTAAA 2 cut(s) 1552, 1585
EaeI YGGCCR 1 cut(s) 3259
Eam1104I CTCTTC 4 cut(s) 868, 1027, 3716, 3844
EarI CTCTTC 4 cut(s) 868, 1027, 3716, 3844
Ecl136II GAGCTC 2 cut(s) 302, 3709
Eco130I CCWWGG 3 cut(s) 2364, 3391, 4009
Eco147I AGGCCT 1 cut(s) 4296
Eco24I GRGCYC 3 cut(s) 304, 2547, 3711
Eco32I GATATC 3 cut(s) 2019, 2313, 2814
Eco47I GGWCC 5 cut(s) 1088, 1289, 2060, 3865, 4115
Eco53kI GAGCTC 2 cut(s) 302, 3709
Eco57I CTGAAG 4 cut(s) 344, 1199, 1352, 2025
Eco81I CCTNAGG 2 cut(s) 1959, 2787
Eco88I CYCGRG 1 cut(s) 848
EcoICRI GAGCTC 2 cut(s) 302, 3709
EcoNI CCTNNNNNAGG 2 cut(s) 1370, 3872
EcoO109I RGGNCCY 1 cut(s) 3865
EcoRI GAATTC 2 cut(s) 496, 1624
EcoRII CCWGG 5 cut(s) 2389, 2665, 3310, 3505, 3867
EcoRV GATATC 3 cut(s) 2019, 2313, 2814
EcoT14I CCWWGG 3 cut(s) 2364, 3391, 4009
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 3 cut(s) 304, 2547, 3711
ErhI CCWWGG 3 cut(s) 2364, 3391, 4009
Esp3I CGTCTC 5 cut(s) 1223, 2442, 2907, 3507, 4229
FalI AAGNNNNNCTT 8 cut(s) 1612, 1644, 2597, 2629, 3375, 3407, 3888, 3920
FaqI GGGAC 6 cut(s) 283, 881, 1421, 2383, 3591, 4128
FauI CCCGC 2 cut(s) 876, 3542
FauNDI CATATG 1 cut(s) 2182
FbaI TGATCA 2 cut(s) 232, 1444
Fnu4HI GCNGC 8 cut(s) 180, 1878, 2278, 2894, 3114, 3117, 4053, 4251
FokI GGATG 8 cut(s) 1124, 1868, 2539, 2735, 3095, 3164, 3367, 4027
FriOI GRGCYC 3 cut(s) 304, 2547, 3711
Fsp4HI GCNGC 8 cut(s) 180, 1878, 2278, 2894, 3114, 3117, 4053, 4251
FspBI CTAG 9 cut(s) 50, 273, 533, 1383, 1490, 1658, 2502, 3041, 4010
GlaI GCGC 1 cut(s) 244
GluI GCNGC 8 cut(s) 180, 1878, 2278, 2894, 3114, 3117, 4053, 4251
GsuI CTGGAG 1 cut(s) 2615
HaeIII GGCC 9 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3848, 4296
HgaI GACGC 2 cut(s) 3252, 4053
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 4064
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 3 cut(s) 1065, 2584, 3036
HindII GTYRAC 3 cut(s) 1065, 2584, 3036
HpaI GTTAAC 1 cut(s) 1065
HphI GGTGA 4 cut(s) 2353, 2501, 3489, 4271
Hpy188I TCNGA 6 cut(s) 107, 1507, 2644, 2676, 2907, 2970
HpyCH4IV ACGT 3 cut(s) 550, 1232, 3025
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113, 4061, 4192
HpySE526I ACGT 3 cut(s) 550, 1232, 3025
Hsp92I GRCGYC 1 cut(s) 4064
HspAI GCGC 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 2 cut(s) 232, 1444
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 2281
LguI GCTCTTC 1 cut(s) 3716
LmnI GCTCC 8 cut(s) 17, 66, 299, 2634, 2640, 2699, 2901, 3706
Lsp1109I GCAGC 5 cut(s) 166, 1864, 3103, 4039, 4237
LweI GCATC 8 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4005
MaeI CTAG 9 cut(s) 50, 273, 533, 1383, 1490, 1658, 2502, 3041, 4010
MaeII ACGT 3 cut(s) 550, 1232, 3025
MaeIII GTNAC 5 cut(s) 286, 707, 1949, 2554, 3364
MfeI CAATTG 2 cut(s) 2754, 4056
MflI RGATCY 4 cut(s) 901, 1021, 1498, 3627
MhlI GDGCHC 5 cut(s) 304, 2547, 3321, 3711, 4174
MlsI TGGCCA 1 cut(s) 3261
MluNI TGGCCA 1 cut(s) 3261
MlyI GAGTC 2 cut(s) 41, 3437
MmeI TCCRAC 3 cut(s) 997, 1066, 1945
Mox20I TGGCCA 1 cut(s) 3261
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 735, 1628
MscI TGGCCA 1 cut(s) 3261
MslI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
Msp20I TGGCCA 1 cut(s) 3261
MspA1I CMGCKG 5 cut(s) 364, 2075, 2280, 2697, 3650
MunI CAATTG 2 cut(s) 2754, 4056
Mva1269I GAATGC 2 cut(s) 2657, 4188
MvaI CCWGG 5 cut(s) 2391, 2667, 3312, 3507, 3869
MvnI CGCG 1 cut(s) 2280
MwoI GCNNNNNNNGC 9 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113, 4061, 4192
NciI CCSGG 5 cut(s) 600, 630, 899, 1874, 4113
NdeI CATATG 1 cut(s) 2182
NheI GCTAGC 1 cut(s) 49
NlaIV GGNNCC 8 cut(s) 903, 1893, 2220, 2897, 3318, 3629, 3879, 4116
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 2 cut(s) 1593, 3982
NspV TTCGAA 2 cut(s) 85, 1696
OliI CACNNNNGTG 1 cut(s) 2224
PaeI GCATGC 1 cut(s) 1593
PagI TCATGA 2 cut(s) 235, 3228
PasI CCCWGGG 1 cut(s) 3311
PceI AGGCCT 1 cut(s) 4296
PciSI GCTCTTC 1 cut(s) 3716
PctI GAATGC 2 cut(s) 2657, 4188
PdmI GAANNNNTTC 2 cut(s) 735, 1628
PflMI CCANNNNNTGG 3 cut(s) 492, 3095, 3548
PfoI TCCNGGA 3 cut(s) 897, 2389, 4111
PinAI ACCGGT 2 cut(s) 2486, 2744
PkrI GCNGC 8 cut(s) 181, 1879, 2279, 2895, 3115, 3118, 4054, 4252
PleI GAGTC 2 cut(s) 40, 3437
PpsI GAGTC 2 cut(s) 40, 3437
PpuMI RGGWCCY 1 cut(s) 3865
PshBI ATTAAT 1 cut(s) 2684
Psp124BI GAGCTC 2 cut(s) 304, 3711
Psp5II RGGWCCY 1 cut(s) 3865
Psp6I CCWGG 5 cut(s) 2389, 2665, 3310, 3505, 3867
PspGI CCWGG 5 cut(s) 2389, 2665, 3310, 3505, 3867
PspN4I GGNNCC 8 cut(s) 903, 1893, 2220, 2897, 3318, 3629, 3879, 4116
PspPI GGNCC 7 cut(s) 623, 1088, 1289, 2060, 3846, 3865, 4115
PspPPI RGGWCCY 1 cut(s) 3865
PsrI GAACNNNNNNTAC 2 cut(s) 2928, 2960
PstI CTGCAG 2 cut(s) 823, 3382
PstNI CAGNNNCTG 2 cut(s) 3386, 3868
PsuI RGATCY 4 cut(s) 901, 1021, 1498, 3627
PvuII CAGCTG 3 cut(s) 364, 2075, 3650
RsaI GTAC 6 cut(s) 955, 2426, 2571, 2752, 3671, 3990
RsaNI GTAC 6 cut(s) 954, 2425, 2570, 2751, 3670, 3989
RseI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
SacI GAGCTC 2 cut(s) 304, 3711
SacII CCGCGG 1 cut(s) 2281
SapI GCTCTTC 1 cut(s) 3716
SatI GCNGC 8 cut(s) 180, 1878, 2278, 2894, 3114, 3117, 4053, 4251
Sau96I GGNCC 7 cut(s) 623, 1088, 1289, 2060, 3846, 3865, 4115
SchI GAGTC 2 cut(s) 41, 3437
SduI GDGCHC 5 cut(s) 304, 2547, 3321, 3711, 4174
SfaNI GCATC 8 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4005
SfcI CTRYAG 4 cut(s) 819, 1068, 3378, 3973
Sfr303I CCGCGG 1 cut(s) 2281
SfuI TTCGAA 2 cut(s) 85, 1696
SgrAI CRCCGGYG 1 cut(s) 2486
SgrBI CCGCGG 1 cut(s) 2281
SinI GGWCC 5 cut(s) 1088, 1289, 2060, 3865, 4115
SmiMI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
SmlI CTYRAG 7 cut(s) 97, 303, 686, 1807, 3277, 3299, 3894
SmoI CTYRAG 7 cut(s) 97, 303, 686, 1807, 3277, 3299, 3894
SpeI ACTAGT 2 cut(s) 532, 2501
SphI GCATGC 1 cut(s) 1593
SseBI AGGCCT 1 cut(s) 4296
SsiI CCGC 8 cut(s) 182, 883, 2278, 2280, 2697, 2893, 3113, 3535
SspI AATATT 3 cut(s) 161, 2091, 2353
SspMI CTAG 9 cut(s) 50, 273, 533, 1383, 1490, 1658, 2502, 3041, 4010
SstI GAGCTC 2 cut(s) 304, 3711
StuI AGGCCT 1 cut(s) 4296
StyI CCWWGG 3 cut(s) 2364, 3391, 4009
TaiI ACGT 3 cut(s) 553, 1235, 3028
TaqI TCGA 7 cut(s) 85, 1139, 1515, 1696, 2015, 2292, 3814
TaqII GACCGA 1 cut(s) 2048
TatI WGTACW 4 cut(s) 953, 2569, 3669, 3988
TauI GCSGC 3 cut(s) 2280, 2896, 3116
TscAI CASTG 9 cut(s) 421, 532, 589, 799, 2782, 3022, 3141, 3672, 4179
TseI GCWGC 5 cut(s) 179, 1877, 3116, 4052, 4250
TspGWI ACGGA 4 cut(s) 3640, 3809, 3814, 4194
TspRI CASTG 9 cut(s) 421, 532, 589, 799, 2782, 3022, 3141, 3672, 4179
Van91I CCANNNNNTGG 3 cut(s) 492, 3095, 3548
VpaK11BI GGWCC 5 cut(s) 1088, 1289, 2060, 3865, 4115
VspI ATTAAT 1 cut(s) 2684
XagI CCTNNNNNAGG 2 cut(s) 1370, 3872
XbaI TCTAGA 1 cut(s) 1382
XceI RCATGY 2 cut(s) 1593, 3982
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 3549
XmaJI CCTAGG 1 cut(s) 4009
XmnI GAANNNNTTC 2 cut(s) 735, 1628
XspI CTAG 9 cut(s) 50, 273, 533, 1383, 1490, 1658, 2502, 3041, 4010
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.