Rh2AG611100
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
83762352 .. 83785892
23541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG611100.1

Sequence Viewer

Length: 10371 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACATCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGGTCCATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCGAACTTCACTCATGGGTTGTAACAAGGAGGACGATGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTTACAAAGCTAGAAGCCCTGGAACGTCGTGTGTTCATTGATAAACTTCTCAAGGAAATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGACTGCAATTGCCAACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCCCTTCCAACACTATGGAACACGATCAAAAGCTCTCTCTCTGCCATGACACAGATAATTGGATGCAAGTCTGAAGCATACAATCTAAAAATTCTCAAAGATGTCAGCGGTATCATCAAACCTTCAAGGATGACTCTTTTACTTGGTCCTCCAGGCTGTGGAAAAACAACCTTATTACAGGCACTTGCAGGAAAACATAACCAATCTCTCAAGGTTCAAGGAGAAATAACCTACAATGGTTATAAGCTCAATGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAGATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGTTGCCAGGGCATTGGAAGCAGAGCTGATATTATGAAAGAAGTTGCTCGAAGGGAGAAGCAAGCTGGTATTGTCCCGGAACCAGACATTGACACTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTCTAATGACAGACTATATAATAAAGATCCTTGGGCTGGACATTTGTGCTGATACAATCGCAGGGGACGCAATGCAAAGAGGAATTTCTGGTGGTCAAAAGAAAAGGCTTACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTTATGGACGAGATATCAACAGGCCTAGACAGCTCCACTACATTTCAAATTGTAACTTGTCTGCAGCAATTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACTCCAGAGACCTTTCACCTGTTTGATGACATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCAAGCGACAATGTTGTGGAGTTCTTTCAGAAATGTGGTTTTTGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGCAAGAGTTCTTGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTACAGTTATGTTAGTATTGATAAGTTCGTAAATATGTTTAAGGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAGCTTTGCAAGCCTTTTGATCAATCTGTGTGCCATAAACATGCTTTGTCCTTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGAGAAACTCATTTATTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAGTAACAATGACAATGTTTCTACGTACATGGATGAAAGTCGACGAGATCCATGCAAAGTACTACATGGGTTCTTTGTTTTATGCTCTACTTAGACTGCTATGCAATGGAACTGCAGAGGTATCAATGACTGCCTCTAGACTAGCAGTCTTCTATAAGCAAAGAGATATCTACTTCTACCCTGCATGGGCTTATTCTATTCCGGCTGCCATCCTGAAAATTCCATTTTCATTGCTAGATGCATTTCTTTGGACAGCCCTTACTTATTATGTGATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTCTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGATCTGTTAGTCTTTTATCTTTAATAGTAATGTTTCTATTTGGAGGCTTCATAATTCCAAAATCTTCTCTACCTCCTTGGTTGGAATGGGGATTTTGGGTTTCTCCGTTGGCATTTGCAGAAATAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTTACTATAGGCCAGCAAGCTTTAATTAACCGGGGTCTAAACTTCAGTGAATACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGGTTCACAGGCGTACTCACTCCAGGGAGTTCTCGGACTATCATTTCTCATGAAAGATTCTCCCGTCTAAAGAATAAAGAAATTTTAGATAATTCCTGTCAAGAAAAAGAAGTAACTAGTGTAGACACTGACATTATTACTTCAGAATCTACAAATGCAGGCATGGTGTTGCCGTTTGAGCCCATAACTATATCATTTGAGAAAGTGAAATACTATATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGACATAACTGGTGCATTTAGACCTGGAATTCTCACAGCTTTGATGGGAATTAGTGGAGCCGGAAAAACGACACTGATGGATGTTCTTTCTGGAAGAAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTTCAAGAAACATATGCAAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCTCCACAGCTTACAGTAGAAGAGTCAGTAGCATACTCAGCTTGGTTACGCTTGCCATCCCAGATTGACAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCAACTGAACAGCGTAAAAGGCTAACAATTGCAGTGGAGCTTGTTTCAAATCCATATGTTATATTCATGGACGAACCCACGTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTCATGCGAGTTGTGAAAAATATTGTCAGTACAAGGAGGACTGTTGTATGCACTATTCATCAGCCAAGTATTGATATATTTGAAGCTTTCGATGAGCTTCTTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAACTGGGTCAAGATTCGAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAACTACAACCCAGCAACATGGATGTTAGAAGTCACGAGTCCTTCTGCAGAAGCCAAACTTGCCATAGATTTTGCTCAGCTTTATAGAGAATCCCGTTTATGCCAGAAGAACAATGACCTAGTTAGAGAACTCAGCTTTCCAGTAGCAGGCTCAAAGGAATTGAATTTTCCTACTCGCTTCCCGCAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTACTGGAGAAATCCAAAATATAACCTGGGGCGATTGTTAATCACTGCTGCATCCTCTTTGATATTTGGAGCAATTCTTTGGCAGAAAGGACAGAAAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATTGGAATTGGTAACAGTTCCTCTGTTTTACCACTTGTCGCTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTATCACAGGTGATCATTGAACTTCCCTATATTTTCCTGCAAGCAGTTCTGTTTTCGACCATTACATATCCAACCATTGGTTTCCACCGGTCACTTTACAAAGTATTCTGGTATGTGTATGCTATGTTTTGTACGCTGCTCTACTTCACTTATTTCGGTATATTGGTTGCTTCTGTGACCCCAACTTTCCAAGTAGCTTCAGTATTATCAAGTTTCTGCTACACAATGTTGAATCTGTTCTCGGGATTCCTAATTCCTCAACCAATATTATGGTATGCATATACACGTAGAATCAGGAAGCGAATAACCTACTTACATTACATTATAGTAACATCGAAAGAGGTACCGAAGAGTGCCTTGGAAGTTGGAACAATGGACTTGGCTGCAGAGATAGGAAGAAGTGTCAGGACCTCGTTTCGTGAGCATGCATCGAGTTTCAGGAGCACTGCAGATGTAAGGTCCATAAAGAAGAATGAAGACGATGAAGTAGAGCTGCAGTGGGCCGCCATTGAGAGGTTGCCAACGTTTGAGCGCATTAGGACTTCATTGTTTGATTGCAGCAAAGATGAGAAGGAAGATGAGGCTAGTAACAAGAGTAAGATGGCACAGATTGATGTGTCGAAGCTAGGATCAATGGAGAGGCATGTGGTCATTCAGAAGTTGATCAAGGAAATTGAGGGAGATAACCACCGGCTCTTGCAGAAACTCAGAGAAAGAATAGACAGAGTAGGACTGCAACTGCCGACTGTGGAAGTTCGATACCAGAATTTGTTAGTAGAAGCAGAATATGAAGTAGTTCAAGGAAAACCTCTCCCTACACTATGGAACACCGTTAAAAGCTTATTCTCTGTTATGACTCAGATAGTTGGGTGCAAGCCTCAAGCATACAAGCTAGAAATTCTCAGAGATATCAGTGGCATCATCAAACCATCAAGGATGACTCTATTGCTTGGCCCTCCAGGCTGTGGGAAATCCACTTTATTACAGGCGCTTGCAGGGAAACTTAACCATTCTCTCAAGGTCCGGGGAAATGTAACCTACAATGGTTATAAGCTCAATGAGTTTGTTCCACAGAAGACATCAGCTTATATAAGTCAATATGACTTGCACATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCGCAGCACGCTGTCAGGGTATTGGAAGCAGAGCAGATATAATGAAAGAAGTCACCAGAAGGGAGAAGCAAGAAGGAATTGTCCCAGATTCAGATATTGATACTTATATGAAGGCCATTTCGGTAGAAGGGTTGAAAAAATCTCTCATGACAGACTACATAATAAAGATCCTTGGGCTAGACATGTGTGCTGAGACAATTGTAGGAGATCCAATGCAAAGAGGAATTTCGGGTGGCCAAAAGAAAAGACTAACAACAGGGGAAATGATGATTGGTCCAGCAAGAGCTTTCTTTATGGACGAGATATCAACAGGCTTAGACAGTTCCACCACCTTCCAAATCGTCACTTGTCTTCAGCAATTGACACACCTAACAGAATCCACCATCTTGGTTTCACTTCTTCAGCCAACACCTGAGACCTTTCATCTGTTTGATGACATTATCTTGATGGCAGAAGGAAAAGTTGTATACCATGGGCCTAGTGATAATGTGGTAGAGTTCTTTGAGAACTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCCCAAAAGGATCAAGCAAAGTACTGGTACGATGAAGACCAACCCCATAGTTATGTTACTGTCGACAACTTTGTAGATATGTTCAAGGACTTCCATGTTGGAAAGAAGCTCGATGAGGAACTTCAGGAGCCTTTCAATCGATCCGAGTTCCATAAAGATGCTTTGTCATTTAACATTTACTCATTGACAAAATGGGAACTCTTCAAAGCATGCCTTGCTAGAGAATGGCTTCTGATGAAGCGCAACTCGTTTGTCCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCGCTAGTAACAATGACAGTGTTTCTTCGTACGTGGATGAAAGTCGATGAGATCCATTCAAATTTCTTTATGAGTTCTTTGTTCTATGCTCTACTTAGATTGGTGTGCAATGGCACTGCAGAGTTATCATTGACTGCTTCCAGACTTGCAGTGTTTTACAAGCAAAGAGACTTTTATTTCTATCCTGCATGGGCTTATTCGGTTCCATCTGCCATCCTAAAGATTCCATTTTCATTGATAGACGCTTTTCTATGGACAGCACTTACTTATTATGTCATCGGTTACAGTCCTGAACCCGAGAGGTTCTTCAAGCAATTCATTCTTTTATTCCTTGTCCATCAAGTAGCAATATCATTGTTCCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTCTTGCAGCCCCTGTTGGTCTTTTCTCCTTAATTGTAATGTTTCTATTTGGCGGCTTCATAATTCCAAAAACTTCTCTACCTAGCTGGCTGGAATGGGGATTTTGGCTTTCCCCATTGGTATATGCAGAAATTGGTGCTACAGGAAACGAATTCCATGCTCCAAGATGGCAAAAGCACTCATCTTCAAATATCACAATAGGTCAGCAAACTCTAAAAGACCGTGGTCTTGATTTCAGTGAATACTTCTATTGGATATCTATAGGAGCTTTACTTGGATTTTGGTTGGTTTTCAACCTAGGTTTCACCTGTGCTCTCAGTTATTTAAAGTCTCCAGGGAGTTCTCGAACAATCATTTCTCATGAAAGGTTGTCCCGTCTGAAGGAAAAGGAAAGTCTAAACAATTCCCCTCAGAAAAAAAAATTAACTCGTATAGAAACTCGAATAAGAGTTGAAGATTCTACAAATATAGGGGTCTTACCTTTTGAACCCTTGACTATATCATTTGAGAAGGTGCAATATTTTGTCGACTTACCCCAGAAACTGAGAGAGCAAGGTGTTCCACCAAAACGACTACAACTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAGTTCTTACAGCACTTATGGGTGTTAGTGGAGCTGGAAAGACAACACTGATGGATGTTCTTTCAGGAAGGAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGACACCCAAAAGTCCAAGAAACATATGCCAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCCCCACAGATAACAGTAGAAGAGTCAATAACATACTCAGCTTGGTTACGTTTGCCAGCACAGGTTGATAGAACAGTCAGATCTGAATTTGTGAGAGAAGTTCTACAAATGATCGAGCTTGATGAAATCAAGGACGAACTAGTAGGCGTACCTGGTAGGGGTATATCGACTGAACAGCGCAAACGGCTTACTATAGCAGTGGAGCTTGTTTCAAATCCATCCATAATGTTCATGGATGAACCCACCTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTTATGCGAGTGGTTAAAAACATTGTCAGCACTAGGAGGACTGTTGTATGCACCATTCACCAGCCCAGTATTGACATCTTTGAAGCATTCAATGAGCTTATTTTAATGAAAATAGGAGGACAGCTAATCTACAGTGGAGCGCTGGGTCAAAATTCAAGCAAGCTTATTGAATACTTTGAGGGTATTCCTGGGGTTCCAAACATCAAAGAAAATTACAACCCCGCAACATGGATGTTAGAGGTCACCGGTCCTTCTGCAGAAGCTAAACTTGGCTTAGATTTTGCTCAACTCTATAGAGAATCACATCTATGCCGGGAGAACGATGACCTAGTTAGAGAACTCAGCTGTCCAGGAGAAGGGGCAAAGAAACTACATTTTTCTACTCGCTTTGCACAAAATGAATGGGAGCAATTTAAAGCCTGCCTCTGGAAGCAACATCTATCCTACTGGAGAAATCCACAATATAACCTGGGCAGATTGACCATTACTGCTGCATCCTCTTTGTTATTCGGAGCACTTCTTTGGCAGAAAGGGCAGACAGTAGATAATGAACAGGAATTTTTCAACATTCTGGGATCAATGTTTGTTTTGCTGCAATTCATGGGAATAGGAAACTGCTCCTCTGTTTTACCCTGTATTGCATCAGAGCGGAATGTCGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCCTATTCATTTGCGCAGGTGATCATTGAAATTCCGTACATATTTCTTCAGGCAGTTTTGTTTTCGGCAATCACATATCCAACCATAAATTTCCACTGGACACTTTACCAAGTGTTGTGGTATGTCTATGCCATGTTTTGTACACTGCTCTACTTCAGTTACTTCGGCATATTGCTTGCTGCTTTGACCCCAACATTCCCAGTGGCTATGGTCCTAGCCAGTTTCTGTTACACCATGTTCAACTTATTCTCAGGTTTCCTCGTGCCTGGGCCGAAAATTCCTAAATGGTGGGTTTGGGGTTATTGGATTTGCCCTGTAGCATGGTCCTTAAACGGTCTTCTCACTTCACAGTACGGAGATCTAAACAAGGTGATAGTAGTACATGGGGAGCAAAAGACCATCAGTGACTTCTTAGAAAGTATTCATGGCCTTCTGATCATTTATCACGGGTCACCCTTCAAGCCAAAGACCCCACTTTCGTTCTGTCAATACAATGGAAGTGTTTGCTGTAATTCCACTGATGATATGCAACTGCAAAATCTATTTAAGGCTATGAATGTTTCTGATCTCTGTTGTGCTTCTCTTCTGAAATCTATACTTTGCTCGAGATGTGATCAGTTTTCCGCAGATCTATACAGAATGGAATCAGTGCCTCGTGAAGTTCCTGTTCTCTGCAACTCAACTATTTCATCAAACTCAACCCAATACCAACACAGTGGAGCTGACTTTTGTACCAAGGTTTGGGATGAATGCCAAAATGTATCTGTATTGAGTTCTCCATTTGCGTTGCAAGGTAGAGGTGGAACACCATTTAATTCTACTTCCAAGCTAAGCAATATATGGCAGTCAAAAAGTGCTTTCTGTGATACATTTGGTGGATCTTCTGATGGGGAATTGGTCTGTTTTGATGGTGGACCAGTGTTGCTGAACAACACTGAAATTCCAAGTCCCCCAAGTGGCATGTGCCTTGAAAAAATTGGAAATGGATCTTATCTTAACATGGTACCTCATCCAGATGGGTCTAATCGCGTGTTCTTATCTGATCAACCGGGGAAAGTATGGCTGGCAACTGTCGCTGAGGAGGGATCAGGAGAAACGTTGGTGATTGATGATTCAAATCCGTTTCTTGATCTAACTGATCAAGTGTATGCTGACACTGAGTTTGGAATGATGGGATTAGCATTCCATCCTAATTATCTACAGAATGGCCGTTTCTTTGCTTCATTTAACTGTGATAAGGTTAGATGGCCAGAATGTTCAGGAAGATGTTCATGCAACTCAGATGTGGGATGTGATCCTTCCAAGCTTGGTTCTGATAATGGTGCTCAGCCATGTCAATATCACAGTATCATAGCAGAGTTCACTGCTAATGGTACCGCATCACAACCTTCTTCGGTCACTAGTGTTAAACCATTGGAAGTCAGAAGAATTTTCACTATGGGACTTCCATTTACTTCCCATCATGGAGGTCAAATTCTTTTTGGACCCAAAGACGGGTATTTGTACTTCATGATGGGAGATGGTGGTAGCGTAGGTGACCCTTACAATTTTTCACAAAACAAGAAATCCTTGCTTGGAAAGATTATGAGGCTCGACATAGACTACTTACCAAGTGCATTCTCAATTAGTGATCTTGGCCTATGGGGAAACTATTCTGTTCCTGGAGATAATCCGTTTTCTGAAGATAAGGAGTTGCAGCCTGAAATTTGGGCTCTAGGATTTAGAAACCCTTGGCGATGTAGTTTTGATCTTGAAAGACCTTCCTACTTCCTTTGTGCTGATGTTGGTCAGGACAAATATGAGGAGGTTGATATAGTCACCAAGGGTGGAAACTACGGATGGCGTGCATATGAGGGTGCTTTTCCATACCATCCCCCAAAGTCTCCAGGAGGAAATACATCTACGAGTTCTATCAACCCGATTTTCCCTGTAATGGGATACAACCACTCTGATGTCAACAAGGCTGAAGGTTCTGCATCAATCACTGGTGGCTACTTTTACCGGTCCATGACAGATCCATGCATGTATGGAAGGTATCTTTATGCGGATTTGTATGCTGGTCACATATGGGAAGGTACAGAAACTCCTGAAGATAGCGGAAACTTCACAAGTACTATAGTTCCTGTCAGTTGTGCTCTGGACTCTCCTATCCAGTGCAGAGCAGAGGCAGGAAGTTCTTTTCCTGCATTGGGGTTCATATTCTCCTTTGGTCAGGATAACAGGAAAGACATGTTTATCTTAGCCAGTACCGGTGTATATAGAGTTGCTAGGCCTGGTCGGTGCAACTACACTTGCTCCAAAGAAAATGCTTCATCTTTTTCCCATCCAGGTTCTGTTCCTTCTCCTTCTCCCTCCACTTCAAGCACTAGGAAGTTGAACAACCCAGTAGTGGAGCTGTTGCTCTTTTACTGTTTAATGTCACTTTTGTTTGGTTTTTAA

Protein Analysis

3456

Amino Acids

389.4

Weight (kDa)

6.7

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 355 5.2e-15 ABC transporter
ABC2_membrane PF01061 514 - 725 2.9e-42 ABC-2 type transporter
PDR_assoc PF08370 730 - 780 3.4e-14 Plant PDR ABC transporter associated
ABC_tran PF00005 865 - 1017 5.2e-18 ABC transporter
ABC2_membrane PF01061 1162 - 1355 1.6e-44 ABC-2 type transporter
ABC_tran PF00005 1562 - 1743 3.1e-14 ABC transporter
ABC2_membrane PF01061 1898 - 2109 9.7e-44 ABC-2 type transporter
PDR_assoc PF08370 2114 - 2176 1e-22 Plant PDR ABC transporter associated
ABC_tran PF00005 2252 - 2403 1e-19 ABC transporter
ABC2_membrane PF01061 2548 - 2762 3.4e-57 ABC-2 type transporter
GSDH PF07995 2987 - 3315 4.1e-20 Glucose / Sorbosone dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 669, 4833
AarI CACCTGC 1 cut(s) 7939
AasI GACNNNNNNGTC 1 cut(s) 1436
Acc16I TGCGCA 1 cut(s) 7947
Acc36I ACCTGC 1 cut(s) 7939
Acc65I GGTACC 5 cut(s) 1368, 2736, 4126, 8935, 9305
AccB1I GGYRCC 5 cut(s) 1368, 2736, 4126, 8935, 9305
AccB7I CCANNNNNTGG 5 cut(s) 584, 3860, 4748, 5488, 8673
AccBSI CCGCTC 1 cut(s) 7885
AccI GTMKAC 8 cut(s) 1230, 1674, 2442, 3738, 5394, 5556, 6699, 7896
AccII CGCG 1 cut(s) 8961
AclI AACGTT 2 cut(s) 4307, 9029
AcoI YGGCCR 3 cut(s) 5161, 9139, 9179
AfeI AGCGCT 1 cut(s) 7377
AflIII ACRYGT 3 cut(s) 4067, 5109, 10161
AgeI ACCGGT 4 cut(s) 3870, 7481, 9933, 10181
AhdI GACNNNNNGTC 1 cut(s) 1778
AhlI ACTAGT 4 cut(s) 1633, 2435, 7099, 9332
AjiI CACGTC 1 cut(s) 3048
AjuI GAANNNNNNNTTGG 6 cut(s) 4124, 4156, 5181, 5213, 7488, 7520
Alw21I GWGCWC 6 cut(s) 74, 4229, 6487, 7753, 9259, 10069
Alw26I GTCTC 9 cut(s) 1172, 2712, 3506, 5114, 5336, 5943, 6507, 6873, 9819
AlwNI CAGNNNCTG 6 cut(s) 2033, 2554, 6185, 6715, 8157, 10265
Ama87I CYCGRG 3 cut(s) 4024, 6077, 8536
Aor51HI AGCGCT 1 cut(s) 7377
ArsI GACNNNNNNTTYG 4 cut(s) 8392, 8424, 9077, 9109
AsiGI ACCGGT 4 cut(s) 3870, 7481, 9933, 10181
Asp718I GGTACC 5 cut(s) 1368, 2736, 4126, 8935, 9305
AspA2I CCTAGG 1 cut(s) 6469
AspLEI GCGC 8 cut(s) 3729, 4317, 4774, 5736, 5785, 7140, 7378, 7948
AsuC2I CCSGG 5 cut(s) 848, 2243, 4808, 7550, 8982
AsuII TTCGAA 1 cut(s) 166
AvaI CYCGRG 3 cut(s) 4024, 6077, 8536
AvrII CCTAGG 1 cut(s) 6469
BaeI ACNNNNGTAYC 2 cut(s) 8647, 8680
BalI TGGCCA 2 cut(s) 5163, 9181
BanI GGYRCC 5 cut(s) 1368, 2736, 4126, 8935, 9305
BanII GRGCYC 2 cut(s) 2502, 9646
BarI GAAGNNNNNNTAC 4 cut(s) 154, 186, 9422, 9454
BauI CACGAG 4 cut(s) 1961, 3322, 8192, 8586
BbsI GAAGAC 7 cut(s) 701, 1774, 4266, 4865, 5270, 5535, 8261
Bbv12I GWGCWC 6 cut(s) 74, 4229, 6487, 7753, 9259, 10069
BbvCI CCTCAGC 1 cut(s) 9009
BceAI ACGGC 3 cut(s) 2476, 7160, 9126
BcgI CGANNNNNNTGC 4 cut(s) 1667, 1701, 6311, 6345
BciVI GTATCC 1 cut(s) 9863
BclI TGATCA 9 cut(s) 202, 1477, 3795, 4446, 7953, 8367, 8545, 8974, 9070
BcnI CCSGG 5 cut(s) 848, 2243, 4808, 7550, 8982
BcoDI GTCTC 9 cut(s) 1172, 2712, 3506, 5114, 5336, 5943, 6507, 6873, 9819
BcuI ACTAGT 4 cut(s) 1633, 2435, 7099, 9332
BfoI RGCGCY 2 cut(s) 4775, 7379
BfuAI ACCTGC 1 cut(s) 7939
BfuI GTATCC 1 cut(s) 9863
BglI GCCNNNNNGGC 1 cut(s) 4743
BglII AGATCT 3 cut(s) 7040, 8290, 8560
BlnI CCTAGG 1 cut(s) 6469
BlpI GCTNAGC 3 cut(s) 3363, 8762, 9258
BmcAI AGTACT 5 cut(s) 1364, 1694, 2901, 5516, 10045
BmeRI GACNNNNNGTC 1 cut(s) 1778
BmeT110I CYCGRG 3 cut(s) 4024, 6077, 8536
BmgBI CACGTC 1 cut(s) 3048
BmrI ACTGGG 4 cut(s) 3230, 7296, 8126, 10310
BmuI ACTGGG 4 cut(s) 3230, 7296, 8126, 10310
BoxI GACNNNNGTC 1 cut(s) 6396
BpiI GAAGAC 7 cut(s) 701, 1774, 4266, 4865, 5270, 5535, 8261
Bpu10I CCTNAGC 1 cut(s) 9009
Bpu1102I GCTNAGC 3 cut(s) 3363, 8762, 9258
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 4 cut(s) 269, 620, 4647, 4784
BpuMI CCSGG 5 cut(s) 848, 2243, 4808, 7550, 8982
Bsa29I ATCGAT 1 cut(s) 5632
BsaAI YACGTR 3 cut(s) 1658, 4070, 5814
BsaBI GATNNNNATC 1 cut(s) 9048
BsaI GGTCTC 2 cut(s) 1172, 5336
BsaWI WCCGGW 4 cut(s) 3870, 7481, 9933, 10181
BsaXI ACNNNNNCTCC 6 cut(s) 3186, 3216, 10000, 10030, 10211, 10241
Bse118I RCCGGY 5 cut(s) 3870, 4473, 7481, 9933, 10181
Bse3DI GCAATG 7 cut(s) 981, 1626, 1744, 1862, 3736, 5778, 5896
Bse8I GATNNNNATC 1 cut(s) 9048
BseCI ATCGAT 1 cut(s) 5632
BseJI GATNNNNATC 1 cut(s) 9048
BseMI GCAATG 7 cut(s) 981, 1626, 1744, 1862, 3736, 5778, 5896
BseRI GAGGAG 7 cut(s) 1472, 3207, 3757, 7846, 7915, 9026, 9749
BseYI CCCAGC 3 cut(s) 1039, 3298, 7378
BsgI GTGCAG 1 cut(s) 10108
Bsh1236I CGCG 1 cut(s) 8961
BshNI GGYRCC 5 cut(s) 1368, 2736, 4126, 8935, 9305
BshTI ACCGGT 4 cut(s) 3870, 7481, 9933, 10181
BshVI ATCGAT 1 cut(s) 5632
BsiHKAI GWGCWC 6 cut(s) 74, 4229, 6487, 7753, 9259, 10069
BsiHKCI CYCGRG 3 cut(s) 4024, 6077, 8536
BsiWI CGTACG 1 cut(s) 5810
BslFI GGGAC 7 cut(s) 363, 830, 983, 4994, 6529, 8865, 9387
BsmAI GTCTC 9 cut(s) 1172, 2712, 3506, 5114, 5336, 5943, 6507, 6873, 9819
BsmFI GGGAC 7 cut(s) 363, 830, 983, 4994, 6529, 8865, 9387
BsmI GAATGC 5 cut(s) 3645, 7322, 8687, 9113, 9548
Bso31I GGTCTC 2 cut(s) 1172, 5336
BsoBI CYCGRG 3 cut(s) 4024, 6077, 8536
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 8 cut(s) 74, 2502, 4229, 6487, 7753, 9259, 9646, 10069
Bsp1407I TGTACA 1 cut(s) 8072
Bsp1720I GCTNAGC 3 cut(s) 3363, 8762, 9258
Bsp19I CCATGG 2 cut(s) 1234, 5398
BspDI ATCGAT 1 cut(s) 5632
BspFNI CGCG 1 cut(s) 8961
BspHI TCATGA 6 cut(s) 205, 1575, 2368, 5073, 6532, 9441
BspMI ACCTGC 1 cut(s) 7939
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 5 cut(s) 1368, 2736, 4126, 8935, 9305
BspTNI GGTCTC 2 cut(s) 1172, 5336
BsrBI CCGCTC 1 cut(s) 7885
BsrDI GCAATG 7 cut(s) 981, 1626, 1744, 1862, 3736, 5778, 5896
BsrFI RCCGGY 5 cut(s) 3870, 4473, 7481, 9933, 10181
BsrGI TGTACA 1 cut(s) 8072
BssAI RCCGGY 5 cut(s) 3870, 4473, 7481, 9933, 10181
BssNAI GTATAC 4 cut(s) 1231, 3739, 5395, 7897
BssSI CACGAG 4 cut(s) 1961, 3322, 8192, 8586
Bst1107I GTATAC 4 cut(s) 1231, 3739, 5395, 7897
Bst2BI CACGAG 4 cut(s) 1961, 3322, 8192, 8586
Bst6I CTCTTC 7 cut(s) 1449, 1574, 2814, 4127, 5699, 6975, 8520
BstAPI GCANNNNNTGC 1 cut(s) 5708
BstAUI TGTACA 1 cut(s) 8072
BstBAI YACGTR 3 cut(s) 1658, 4070, 5814
BstBI TTCGAA 1 cut(s) 166
BstDSI CCRYGG 3 cut(s) 1234, 5398, 6394
BstEII GGTNACC 3 cut(s) 7477, 8382, 9467
BstENI CCTNNNNNAGG 2 cut(s) 1319, 5483
BstFNI CGCG 1 cut(s) 8961
BstH2I RGCGCY 2 cut(s) 4775, 7379
BstHHI GCGC 8 cut(s) 3729, 4317, 4774, 5736, 5785, 7140, 7378, 7948
BstMAI GTCTC 9 cut(s) 1172, 2712, 3506, 5114, 5336, 5943, 6507, 6873, 9819
BstPAI GACNNNNGTC 1 cut(s) 6396
BstPI GGTNACC 3 cut(s) 7477, 8382, 9467
BstSNI TACGTA 1 cut(s) 1658
BstUI CGCG 1 cut(s) 8961
BstV2I GAAGAC 7 cut(s) 701, 1774, 4266, 4865, 5270, 5535, 8261
BstXI CCANNNNNNTGG 7 cut(s) 441, 785, 1150, 3306, 4053, 5314, 8648
BstZ17I GTATAC 4 cut(s) 1231, 3739, 5395, 7897
Bsu15I ATCGAT 1 cut(s) 5632
BsuI GTATCC 1 cut(s) 9863
BsuTUI ATCGAT 1 cut(s) 5632
BtgI CCRYGG 3 cut(s) 1234, 5398, 6394
BtgZI GCGATG 1 cut(s) 9682
BtrI CACGTC 1 cut(s) 3048
BveI ACCTGC 1 cut(s) 7939
CaiI CAGNNNCTG 6 cut(s) 2033, 2554, 6185, 6715, 8157, 10265
CciI TCATGA 6 cut(s) 205, 1575, 2368, 5073, 6532, 9441
CfoI GCGC 8 cut(s) 3729, 4317, 4774, 5736, 5785, 7140, 7378, 7948
Cfr10I RCCGGY 5 cut(s) 3870, 4473, 7481, 9933, 10181
ClaI ATCGAT 1 cut(s) 5632
CseI GACGC 2 cut(s) 980, 6032
CsiI ACCWGGT 2 cut(s) 2950, 7111
CspAI ACCGGT 4 cut(s) 3870, 7481, 9933, 10181
CspCI CAANNNNNGTGG 4 cut(s) 2982, 3017, 8030, 8065
DraI TTTAAA 3 cut(s) 3493, 6498, 7651
DrdI GACNNNNNNGTC 1 cut(s) 1436
DriI GACNNNNNGTC 1 cut(s) 1778
DseDI GACNNNNNNGTC 1 cut(s) 1436
EaeI YGGCCR 3 cut(s) 5161, 9139, 9179
Eam1104I CTCTTC 7 cut(s) 1449, 1574, 2814, 4127, 5699, 6975, 8520
Eam1105I GACNNNNNGTC 1 cut(s) 1778
EarI CTCTTC 7 cut(s) 1449, 1574, 2814, 4127, 5699, 6975, 8520
Eco105I TACGTA 1 cut(s) 1658
Eco147I AGGCCT 2 cut(s) 1077, 10204
Eco24I GRGCYC 2 cut(s) 2502, 9646
Eco31I GGTCTC 2 cut(s) 1172, 5336
Eco32I GATATC 6 cut(s) 1068, 1801, 2277, 4693, 5232, 6429
Eco47III AGCGCT 1 cut(s) 7377
Eco88I CYCGRG 3 cut(s) 4024, 6077, 8536
Eco91I GGTNACC 3 cut(s) 7477, 8382, 9467
EcoNI CCTNNNNNAGG 2 cut(s) 1319, 5483
EcoO109I RGGNCCY 1 cut(s) 4191
EcoO65I GGTNACC 3 cut(s) 7477, 8382, 9467
EcoRI GAATTC 2 cut(s) 2625, 6323
EcoRV GATATC 6 cut(s) 1068, 1801, 2277, 4693, 5232, 6429
EcoT22I ATGCAT 6 cut(s) 58, 1876, 3680, 4063, 4213, 9956
EcoT38I GRGCYC 2 cut(s) 2502, 9646
FaqI GGGAC 7 cut(s) 363, 830, 983, 4994, 6529, 8865, 9387
FauI CCCGC 2 cut(s) 3477, 7465
FauNDI CATATG 5 cut(s) 2758, 3022, 6919, 9781, 9998
FbaI TGATCA 9 cut(s) 202, 1477, 3795, 4446, 7953, 8367, 8545, 8974, 9070
FblI GTMKAC 8 cut(s) 1230, 1674, 2442, 3738, 5394, 5556, 6699, 7896
FriOI GRGCYC 2 cut(s) 2502, 9646
FspI TGCGCA 1 cut(s) 7947
GlaI GCGC 8 cut(s) 3728, 4316, 4773, 5735, 5784, 7139, 7377, 7947
GsaI CCCAGC 3 cut(s) 1043, 3302, 7382
HaeII RGCGCY 2 cut(s) 4775, 7379
HgaI GACGC 2 cut(s) 980, 6032
HhaI GCGC 8 cut(s) 3729, 4317, 4774, 5736, 5785, 7140, 7378, 7948
Hin6I GCGC 8 cut(s) 3727, 4315, 4772, 5734, 5783, 7138, 7376, 7946
HinP1I GCGC 8 cut(s) 3727, 4315, 4772, 5734, 5783, 7138, 7376, 7946
HincII GTYRAC 4 cut(s) 1675, 5557, 6700, 9889
HindII GTYRAC 4 cut(s) 1675, 5557, 6700, 9889
HindIII AAGCTT 7 cut(s) 1448, 2229, 3162, 3239, 4621, 7397, 9236
Hpy99I CGWCG 2 cut(s) 264, 1679
HpyCH4IV ACGT 9 cut(s) 160, 259, 1657, 3047, 4069, 4307, 5813, 7009, 9029
HpySE526I ACGT 9 cut(s) 160, 259, 1657, 3047, 4069, 4307, 5813, 7009, 9029
HspAI GCGC 8 cut(s) 3727, 4315, 4772, 5734, 5783, 7138, 7376, 7946
KpnI GGTACC 5 cut(s) 1372, 2740, 4130, 8939, 9309
Ksp22I TGATCA 9 cut(s) 202, 1477, 3795, 4446, 7953, 8367, 8545, 8974, 9070
MabI ACCWGGT 2 cut(s) 2950, 7111
MaeII ACGT 9 cut(s) 160, 259, 1657, 3047, 4069, 4307, 5813, 7009, 9029
MbiI CCGCTC 1 cut(s) 7885
MfeI CAATTG 6 cut(s) 356, 885, 1121, 2994, 5124, 5285
MhlI GDGCHC 8 cut(s) 74, 2502, 4229, 6487, 7753, 9259, 9646, 10069
MlsI TGGCCA 2 cut(s) 5163, 9181
MluNI TGGCCA 2 cut(s) 5163, 9181
MlyI GAGTC 8 cut(s) 553, 1120, 2831, 3334, 4633, 4717, 6992, 10067
MmeI TCCRAC 7 cut(s) 458, 1420, 2091, 3878, 4129, 5572, 8036
Mox20I TGGCCA 2 cut(s) 5163, 9181
Mph1103I ATGCAT 6 cut(s) 58, 1876, 3680, 4063, 4213, 9956
MscI TGGCCA 2 cut(s) 5163, 9181
MslI CAYNNNNRTG 8 cut(s) 51, 869, 1497, 5544, 5649, 7543, 8946, 9882
Msp20I TGGCCA 2 cut(s) 5163, 9181
MspA1I CMGCKG 4 cut(s) 534, 3071, 7229, 7581
MunI CAATTG 6 cut(s) 356, 885, 1121, 2994, 5124, 5285
Mva1269I GAATGC 5 cut(s) 3645, 7322, 8687, 9113, 9548
MvnI CGCG 1 cut(s) 8961
NciI CCSGG 5 cut(s) 848, 2243, 4808, 7550, 8982
NcoI CCATGG 2 cut(s) 1234, 5398
NdeI CATATG 5 cut(s) 2758, 3022, 6919, 9781, 9998
NsbI TGCGCA 1 cut(s) 7947
NsiI ATGCAT 6 cut(s) 58, 1876, 3680, 4063, 4213, 9956
NspV TTCGAA 1 cut(s) 166
PacI TTAATTAA 1 cut(s) 2238
PaeI GCATGC 4 cut(s) 56, 1554, 4211, 5706
PaeR7I CTCGAG 1 cut(s) 8536
PagI TCATGA 6 cut(s) 205, 1575, 2368, 5073, 6532, 9441
PaqCI CACCTGC 1 cut(s) 7939
PceI AGGCCT 2 cut(s) 1077, 10204
PciI ACATGT 2 cut(s) 5109, 10161
PctI GAATGC 5 cut(s) 3645, 7322, 8687, 9113, 9548
Pfl23II CGTACG 1 cut(s) 5810
PflMI CCANNNNNTGG 5 cut(s) 584, 3860, 4748, 5488, 8673
PfoI TCCNGGA 4 cut(s) 846, 7585, 9592, 9817
PinAI ACCGGT 4 cut(s) 3870, 7481, 9933, 10181
PleI GAGTC 8 cut(s) 553, 1120, 2830, 3333, 4633, 4717, 6991, 10067
PpsI GAGTC 8 cut(s) 553, 1120, 2830, 3333, 4633, 4717, 6991, 10067
Ppu21I YACGTR 3 cut(s) 1658, 4070, 5814
PpuMI RGGWCCY 1 cut(s) 4191
PscI ACATGT 2 cut(s) 5109, 10161
PshAI GACNNNNGTC 1 cut(s) 6396
PsiI TTATAA 2 cut(s) 669, 4833
Psp1406I AACGTT 2 cut(s) 4307, 9029
Psp5II RGGWCCY 1 cut(s) 4191
PspEI GGTNACC 3 cut(s) 7477, 8382, 9467
PspFI CCCAGC 3 cut(s) 1039, 3298, 7378
PspLI CGTACG 1 cut(s) 5810
PspPPI RGGWCCY 1 cut(s) 4191
PstNI CAGNNNCTG 6 cut(s) 2033, 2554, 6185, 6715, 8157, 10265
PvuII CAGCTG 3 cut(s) 3071, 7229, 7581
RseI CAYNNNNRTG 8 cut(s) 51, 869, 1497, 5544, 5649, 7543, 8946, 9882
SalI GTCGAC 3 cut(s) 1673, 5555, 6698
ScaI AGTACT 5 cut(s) 1364, 1694, 2901, 5516, 10045
SchI GAGTC 8 cut(s) 553, 1120, 2831, 3334, 4633, 4717, 6992, 10067
SduI GDGCHC 8 cut(s) 74, 2502, 4229, 6487, 7753, 9259, 9646, 10069
SexAI ACCWGGT 2 cut(s) 2950, 7111
Sfr274I CTCGAG 1 cut(s) 8536
SfuI TTCGAA 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 8536
SmiMI CAYNNNNRTG 8 cut(s) 51, 869, 1497, 5544, 5649, 7543, 8946, 9882
SmlI CTYRAG 5 cut(s) 284, 635, 4662, 4799, 8536
SmoI CTYRAG 5 cut(s) 284, 635, 4662, 4799, 8536
SnaBI TACGTA 1 cut(s) 1658
SpeI ACTAGT 4 cut(s) 1633, 2435, 7099, 9332
SphI GCATGC 4 cut(s) 56, 1554, 4211, 5706
SseBI AGGCCT 2 cut(s) 1077, 10204
SspI AATATT 4 cut(s) 3100, 3660, 4050, 6692
StuI AGGCCT 2 cut(s) 1077, 10204
TaiI ACGT 9 cut(s) 163, 262, 1660, 3050, 4072, 4310, 5816, 7012, 9032
TaqII GACCGA 1 cut(s) 9316
TauI GCSGC 2 cut(s) 4289, 6228
TspGWI ACGGA 8 cut(s) 2124, 5435, 6131, 7956, 8301, 9042, 9594, 9783
Van91I CCANNNNNTGG 5 cut(s) 584, 3860, 4748, 5488, 8673
XagI CCTNNNNNAGG 2 cut(s) 1319, 5483
XbaI TCTAGA 2 cut(s) 1559, 1769
XcmI CCANNNNNNNNNTGG 1 cut(s) 7189
XhoI CTCGAG 1 cut(s) 8536
XmaJI CCTAGG 1 cut(s) 6469
XmiI GTMKAC 8 cut(s) 1230, 1674, 2442, 3738, 5394, 5556, 6699, 7896
ZrmI AGTACT 5 cut(s) 1364, 1694, 2901, 5516, 10045
Zsp2I ATGCAT 6 cut(s) 58, 1876, 3680, 4063, 4213, 9956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.