Rmu_sc0000648.1_g000007

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000648.1
OG0000472
Physical Location & Seq
Forward (+)
30983 .. 38863
7881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000648.1_g000007.1.cds

Sequence Viewer

Length: 3342 bp
atggatttggctgcagagataggaagaagtgtgaagacttcttttcatcagcatgcatcaagtttcaggagcacttcagatgtcaggtccatgaaagagaatgatgacgatgaagttgagctgcagtgggctgccattgaaagattgcccacatttgaacgtattcgaacttcactcatgggttgtaacaaggaggacgatgatcatgaaggtaagagtaagagggtagttgatgttacaaagctagaagccctggaacgtcatgtgttcattgataaacttctcaaggaaatagaaggagataatcaacgcctcttacagaaactcaaagaaagaatagaaagagtgggactgcaattgccaactgtggaagtacgataccaaaatttgtttgtagaagcagaatgtgaagtagttcaaggaaagccccttccaacactatggaacacgctcaaaagctctctctctataattggatgcaagtctgaagcatacaatctaaaaattctcaaagatgtcagcggtatcatcaagccttcaaggatgactcttttacttggtcctccaggctgtggaaaaacaaccttattacaggcacttgcaggaaaacataaccaatctctcaagaagacatcagcttacataagtcaatatgacttgcatatttctgagatgactgtgagggaagcactggatttctcatctcgttgccagggcattggaagcagagctgatattatgaaagaagttgctcgaagggagaagcaagctggtatagtcccggaaccagacattgacacttatatgaagccaactccggagacttttcatctgtttgatgacattatcttgatggctgaaggaaaagttgtataccatgggccaagggacaatgttgtggagttctttcagaaatgcggtttttgtagcccaccacgaaaaggcatttctgacttcctccaagaggcaagagtggtttctcaaaaggatcaagcaaagtactggtaccataaggaccaaccctacagttatgttagtattgataagttcgtaaatatgtttaaggacttccatgtcggaaagaagcttgaagaggagctttgcaagccttttgatcaatctgtgtgccataaacatgctttgtcattcaacatttactcactgagaaaatgggaactattcaaagcatgcctttctagagaatggcttctcatgaagagaaactcatttattcatgtattcaaatcagcacagcttgtggtcattgcactagtaacaatgacaatgtttctacgtacatggatgaaagtcgacgaaatccatgcaaagtactacatgggttctttgttttatgctctacttagactgctatgcaatggaactgcagagatatcaatgactgcctctagactagcagtcttctataagcaaagagatatctacttctacccagcatgggcttattctattccggctgccatcctgaaaattccattttcattgctagatgcatttctttggacagcccttacttattatgtgattggttacagtcctgaacctgaaaggttcttcaggcaatttgttcttctgttcctcgtgcatcaagtagcaatatcactatttcgtttgattgcatccttggtccgaaatccttctgttgcaggatctgtcagcatggtgttgccgtttgagcccataactatatcatttgagaaagtgaaatactatattgatacaccccagaaactgagagggcaaggtttcccaccaaatcgactacagcttcttcaagacataactggtgcatttagacctggaattctcacagctttgatgggagttagtggagccggaaaaacgacactgatggatgttctttctggaagaaaaactggtggaattattgaaggagacattagaattggagggtacccaaaagttcaagaaacatatgcaagaatatctgggtattgcgagcaaagtgacatacattctccacagcttacagtagaagagtcagtagcgtactcagcttggttacgcttgtcatcccagattgacagaaatactagagctgagtttgtgaaagaagtacttcaaatgatagagcttgatgaaatcaaagacgagttagttggcataccaggtggtagtggtatatcaactgaacagcgtaaaaggctaacaattgcagtggagcttgtttcaaatccatctgttatattcatggacgaacccacgtctggtttagatgccagagcagctgcaatagtcatgcgagttgtgaaaaatattgtcagtacaaggaggactgttgtatgcactattcatcagccaagtattgacatatttgaagccttcgatgagggtatttctggggttccaaaaatcaaagataactacaacccagcaacatggatgttagaagtcacgagtccttctgcagaagccaaacttgccatagattttgctcagctttatagagaatcagatttatgccagaagaacaatgacctagttagagaactcaactttccagtagaaggctcaaaggaattgaattttcctactcgcttcccgcaaaatggatgggagcaatttaaagcatgtctctggaagagacatctctcctactggagaaatccaaaatataacctggggcgattgttaatcactgctgcatcctctttgatatttggagcacttctttggcagaaaggacagaaaatttcctcagttttaccatttgtcgcttctgagcgcaatgttgtataccgagaaaggtttgctggaatgtactcctcatgggcatattctttatcccaggtgatcattgaacttccctatattttccttcaagcagttctgttttcgaccattacatatccaaccattggtttccactggtcactttacaaagtattctggtatgtgtatgctatgttttgtacgctgctctacttcacttacttcggtatattggttgcttctgtgaccccaactttccaagtagcttcagtattatcaagtttctgctacacaatgttgaatctgttctcgggattcctaatacctcaaccaaacattcctaaatggtgggtttggggctactggatttctcctttatcctggtccttgaagggtattctcacttcgcagtatggggacctaaacaaggaaatagtactccggggggaggaaaagactatcagtgccttcctaggaagcatttatgggtataaatacgatgatctaggaattgttcttcttgcatattcactagttttcgcatttgcgtttgcacttgctacagaaaaactaaacttccagaggaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1113

Amino Acids

127.02

Weight (kDa)

8.73

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1073
Acc65I GGTACC 2 cut(s) 1005, 1932
AccB1I GGYRCC 2 cut(s) 1005, 1932
AccB7I CCANNNNNTGG 2 cut(s) 572, 2897
AccI GTMKAC 3 cut(s) 873, 1311, 2775
AccIII TCCGGA 1 cut(s) 817
AciI CCGC 3 cut(s) 522, 918, 2582
AclWI GGATC 2 cut(s) 996, 1675
AcsI RAATTY 6 cut(s) 385, 504, 1488, 1821, 2563, 2730
AcuI CTGAAG 5 cut(s) 60, 507, 879, 1558, 3003
AhdI GACNNNNNGTC 1 cut(s) 1415
AhlI ACTAGT 2 cut(s) 1270, 3283
AjiI CACGTC 1 cut(s) 2244
AjnI CCWGG 8 cut(s) 252, 565, 711, 1816, 2146, 2658, 2826, 3131
Alw21I GWGCWC 2 cut(s) 74, 2707
Alw26I GTCTC 4 cut(s) 815, 1908, 2617, 2618
AlwI GGATC 2 cut(s) 996, 1675
AlwNI CAGNNNCTG 2 cut(s) 1670, 1750
Ama87I CYCGRG 1 cut(s) 3061
Aor13HI TCCGGA 1 cut(s) 817
AoxI GGCC 1 cut(s) 881
ApeKI GCWGC 8 cut(s) 11, 121, 131, 1475, 2264, 2267, 2681, 2956
ApoI RAATTY 6 cut(s) 385, 504, 1488, 1821, 2563, 2730
Asp700I GAANNNNTTC 6 cut(s) 162, 414, 1206, 1654, 2097, 3056
Asp718I GGTACC 2 cut(s) 1005, 1932
AspA2I CCTAGG 1 cut(s) 3223
AspLEI GCGC 1 cut(s) 2766
AspS9I GGNCC 7 cut(s) 87, 560, 881, 1015, 1645, 3135, 3169
AsuC2I CCSGG 2 cut(s) 782, 3194
AsuHPI GGTGA 1 cut(s) 2842
AsuII TTCGAA 1 cut(s) 166
AvaI CYCGRG 1 cut(s) 3061
AvaII GGWCC 6 cut(s) 87, 560, 1015, 1645, 3135, 3169
AvrII CCTAGG 1 cut(s) 3223
BanI GGYRCC 2 cut(s) 1005, 1932
BanII GRGCYC 1 cut(s) 1698
BarI GAAGNNNNNNTAC 4 cut(s) 154, 186, 3139, 3171
BauI CACGAG 2 cut(s) 1598, 2434
BbsI GAAGAC 3 cut(s) 41, 635, 1411
Bbv12I GWGCWC 2 cut(s) 74, 2707
BbvI GCAGC 7 cut(s) 108, 118, 1462, 2254, 2276, 2668, 2943
BccI CCATC 6 cut(s) 847, 1487, 1831, 1864, 2224, 2586
BceAI ACGGC 1 cut(s) 1672
BcgI CGANNNNNNTGC 2 cut(s) 1304, 1338
BciT130I CCWGG 8 cut(s) 254, 567, 713, 1818, 2148, 2660, 2828, 3133
BclI TGATCA 3 cut(s) 202, 1114, 2832
BcnI CCSGG 2 cut(s) 782, 3194
BcoDI GTCTC 4 cut(s) 815, 1908, 2617, 2618
BcuI ACTAGT 2 cut(s) 1270, 3283
BfmI CTRYAG 7 cut(s) 12, 122, 1024, 1383, 1781, 2445, 3312
BisI GCNGC 8 cut(s) 12, 122, 132, 1476, 2265, 2268, 2682, 2957
BlnI CCTAGG 1 cut(s) 3223
BlpI GCTNAGC 1 cut(s) 2475
BlsI GCNGC 8 cut(s) 13, 123, 133, 1477, 2266, 2269, 2683, 2958
BmcAI AGTACT 4 cut(s) 1001, 1331, 2097, 3189
Bme18I GGWCC 6 cut(s) 87, 560, 1015, 1645, 3135, 3169
BmeRI GACNNNNNGTC 1 cut(s) 1415
BmeT110I CYCGRG 1 cut(s) 3061
BmgBI CACGTC 1 cut(s) 2244
BmgT120I GGNCC 7 cut(s) 87, 560, 881, 1015, 1645, 3135, 3169
BmiI GGNNCC 6 cut(s) 786, 1007, 1852, 1934, 2385, 3170
BmsI GCATC 7 cut(s) 65, 467, 1498, 1612, 1646, 2245, 2693
BpiI GAAGAC 3 cut(s) 41, 635, 1411
BpmI CTGGAG 2 cut(s) 549, 2659
Bpu1102I GCTNAGC 1 cut(s) 2475
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 269, 608
BpuMI CCSGG 2 cut(s) 782, 3194
BsaAI YACGTR 1 cut(s) 1295
BsaJI CCNNGG 9 cut(s) 252, 712, 877, 884, 1641, 2659, 2826, 3193, 3223
BsaWI WCCGGW 1 cut(s) 817
Bse1I ACTGG 8 cut(s) 696, 1007, 1807, 1900, 2540, 2642, 2912, 3119
Bse3DI GCAATG 4 cut(s) 1263, 1381, 1499, 2773
BseAI TCCGGA 1 cut(s) 817
BseBI CCWGG 8 cut(s) 254, 567, 713, 1818, 2148, 2660, 2828, 3133
BseDI CCNNGG 9 cut(s) 252, 712, 877, 884, 1641, 2659, 2826, 3193, 3223
BseMI GCAATG 4 cut(s) 1263, 1381, 1499, 2773
BseMII CTCAG 8 cut(s) 660, 1154, 1742, 2046, 2070, 2489, 2751, 2751
BseNI ACTGG 8 cut(s) 696, 1007, 1807, 1900, 2540, 2642, 2912, 3119
BseRI GAGGAG 2 cut(s) 1109, 2794
BseXI GCAGC 7 cut(s) 108, 118, 1462, 2254, 2276, 2668, 2943
BseYI CCCAGC 2 cut(s) 1450, 2410
BshFI GGCC 1 cut(s) 883
BshNI GGYRCC 2 cut(s) 1005, 1932
BsiHKAI GWGCWC 2 cut(s) 74, 2707
BsiHKCI CYCGRG 1 cut(s) 3061
BsiSI CCGG 5 cut(s) 782, 818, 1472, 1854, 3193
BslFI GGGAC 4 cut(s) 363, 764, 902, 3182
BsmAI GTCTC 4 cut(s) 815, 1908, 2617, 2618
BsmFI GGGAC 4 cut(s) 363, 764, 902, 3182
BsnI GGCC 1 cut(s) 883
BsoBI CYCGRG 1 cut(s) 3061
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 3 cut(s) 74, 1698, 2707
Bsp13I TCCGGA 1 cut(s) 817
Bsp143I GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
Bsp1720I GCTNAGC 1 cut(s) 2475
Bsp19I CCATGG 1 cut(s) 877
BspACI CCGC 3 cut(s) 522, 918, 2582
BspANI GGCC 1 cut(s) 883
BspCNI CTCAG 8 cut(s) 661, 1155, 1743, 2045, 2071, 2488, 2750, 2752
BspEI TCCGGA 1 cut(s) 817
BspHI TCATGA 2 cut(s) 205, 1212
BspLI GGNNCC 6 cut(s) 786, 1007, 1852, 1934, 2385, 3170
BspMAI CTGCAG 4 cut(s) 16, 126, 1387, 2449
BspPI GGATC 2 cut(s) 996, 1675
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 2 cut(s) 1005, 1932
BsrDI GCAATG 4 cut(s) 1263, 1381, 1499, 2773
BsrI ACTGG 8 cut(s) 696, 1007, 1807, 1900, 2540, 2642, 2912, 3119
BssECI CCNNGG 9 cut(s) 252, 712, 877, 884, 1641, 2659, 2826, 3193, 3223
BssMI GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
BssNAI GTATAC 2 cut(s) 874, 2776
BssSI CACGAG 2 cut(s) 1598, 2434
BssT1I CCWWGG 4 cut(s) 877, 884, 1641, 3223
Bst1107I GTATAC 2 cut(s) 874, 2776
Bst2BI CACGAG 2 cut(s) 1598, 2434
Bst2UI CCWGG 8 cut(s) 254, 567, 713, 1818, 2148, 2660, 2828, 3133
Bst4CI ACNGT 6 cut(s) 367, 679, 1028, 1553, 2011, 2317
Bst6I CTCTTC 4 cut(s) 1086, 1211, 2010, 2615
BstBAI YACGTR 1 cut(s) 1295
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 5 cut(s) 54, 768, 1106, 1189, 1979
BstDEI CTNAG 9 cut(s) 669, 1163, 1361, 1751, 2032, 2079, 2475, 2737, 2760
BstDSI CCRYGG 1 cut(s) 877
BstENI CCTNNNNNAGG 2 cut(s) 962, 3176
BstHHI GCGC 1 cut(s) 2766
BstKTI GATC 6 cut(s) 205, 991, 1117, 1670, 2835, 3256
BstMAI GTCTC 4 cut(s) 815, 1908, 2617, 2618
BstMBI GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
BstMWI GCNNNNNNNGC 7 cut(s) 723, 1105, 1693, 2033, 2182, 2264, 2459
BstNI CCWGG 8 cut(s) 254, 567, 713, 1818, 2148, 2660, 2828, 3133
BstNSI RCATGY 4 cut(s) 56, 1139, 1191, 2613
BstSFI CTRYAG 7 cut(s) 12, 122, 1024, 1383, 1781, 2445, 3312
BstSNI TACGTA 1 cut(s) 1295
BstV1I GCAGC 7 cut(s) 108, 118, 1462, 2254, 2276, 2668, 2943
BstV2I GAAGAC 3 cut(s) 41, 635, 1411
BstX2I RGATCY 1 cut(s) 1667
BstXI CCANNNNNNTGG 3 cut(s) 441, 719, 2418
BstYI RGATCY 1 cut(s) 1667
BstZ17I GTATAC 2 cut(s) 874, 2776
BsuRI GGCC 1 cut(s) 883
BtgI CCRYGG 1 cut(s) 877
BtrI CACGTC 1 cut(s) 2244
BtsI GCAGTG 3 cut(s) 131, 2202, 2676
BtsIMutI CAGTG 8 cut(s) 131, 689, 1160, 1865, 2202, 2676, 2905, 3220
Cac8I GCNNGC 5 cut(s) 54, 768, 1106, 1189, 1979
CaiI CAGNNNCTG 2 cut(s) 1670, 1750
CciI TCATGA 2 cut(s) 205, 1212
CfoI GCGC 1 cut(s) 2766
Cfr13I GGNCC 7 cut(s) 87, 560, 881, 1015, 1645, 3135, 3169
CsiI ACCWGGT 1 cut(s) 2146
CspCI CAANNNNNGTGG 2 cut(s) 2178, 2213
DdeI CTNAG 9 cut(s) 669, 1163, 1361, 1751, 2032, 2079, 2475, 2737, 2760
DpnI GATC 6 cut(s) 204, 990, 1116, 1669, 2834, 3255
DpnII GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
DraI TTTAAA 1 cut(s) 2605
DrdI GACNNNNNNGTC 1 cut(s) 1073
DriI GACNNNNNGTC 1 cut(s) 1415
DseDI GACNNNNNNGTC 1 cut(s) 1073
Eam1104I CTCTTC 4 cut(s) 1086, 1211, 2010, 2615
Eam1105I GACNNNNNGTC 1 cut(s) 1415
EarI CTCTTC 4 cut(s) 1086, 1211, 2010, 2615
Eco105I TACGTA 1 cut(s) 1295
Eco130I CCWWGG 4 cut(s) 877, 884, 1641, 3223
Eco24I GRGCYC 1 cut(s) 1698
Eco32I GATATC 2 cut(s) 1392, 1438
Eco47I GGWCC 6 cut(s) 87, 560, 1015, 1645, 3135, 3169
Eco57I CTGAAG 5 cut(s) 60, 507, 879, 1558, 3003
Eco88I CYCGRG 1 cut(s) 3061
EcoNI CCTNNNNNAGG 2 cut(s) 962, 3176
EcoO109I RGGNCCY 1 cut(s) 3169
EcoRI GAATTC 1 cut(s) 1821
EcoRII CCWGG 8 cut(s) 252, 565, 711, 1816, 2146, 2658, 2826, 3131
EcoRV GATATC 2 cut(s) 1392, 1438
EcoT14I CCWWGG 4 cut(s) 877, 884, 1641, 3223
EcoT22I ATGCAT 2 cut(s) 58, 1513
EcoT38I GRGCYC 1 cut(s) 1698
ErhI CCWWGG 4 cut(s) 877, 884, 1641, 3223
FalI AAGNNNNNCTT 8 cut(s) 1083, 1115, 1176, 1208, 2082, 2114, 2442, 2474
FaqI GGGAC 4 cut(s) 363, 764, 902, 3182
FauI CCCGC 1 cut(s) 2589
FauNDI CATATG 1 cut(s) 1954
FbaI TGATCA 3 cut(s) 202, 1114, 2832
FblI GTMKAC 3 cut(s) 873, 1311, 2775
Fnu4HI GCNGC 8 cut(s) 12, 122, 132, 1476, 2265, 2268, 2682, 2957
FriOI GRGCYC 1 cut(s) 1698
Fsp4HI GCNGC 8 cut(s) 12, 122, 132, 1476, 2265, 2268, 2682, 2957
GlaI GCGC 1 cut(s) 2765
GluI GCNGC 8 cut(s) 12, 122, 132, 1476, 2265, 2268, 2682, 2957
GsaI CCCAGC 2 cut(s) 1454, 2414
GsuI CTGGAG 2 cut(s) 549, 2659
HaeIII GGCC 1 cut(s) 883
HapII CCGG 5 cut(s) 782, 818, 1472, 1854, 3193
HhaI GCGC 1 cut(s) 2766
Hin6I GCGC 1 cut(s) 2764
HinP1I GCGC 1 cut(s) 2764
HincII GTYRAC 1 cut(s) 1312
HindII GTYRAC 1 cut(s) 1312
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 6 cut(s) 547, 2018, 2437, 2489, 3052, 3066
HpaII CCGG 5 cut(s) 782, 818, 1472, 1854, 3193
HphI GGTGA 1 cut(s) 2842
Hpy166II GTNNAC 3 cut(s) 874, 1312, 2776
Hpy188I TCNGA 9 cut(s) 79, 487, 670, 912, 952, 1079, 1649, 2494, 2761
Hpy8I GTNNAC 3 cut(s) 874, 1312, 2776
Hpy99I CGWCG 1 cut(s) 1316
HpyCH4III ACNGT 6 cut(s) 367, 679, 1028, 1553, 2011, 2317
HpyCH4IV ACGT 4 cut(s) 160, 259, 1294, 2243
HpyF10VI GCNNNNNNNGC 7 cut(s) 723, 1105, 1693, 2033, 2182, 2264, 2459
HpyF3I CTNAG 9 cut(s) 669, 1163, 1361, 1751, 2032, 2079, 2475, 2737, 2760
HpySE526I ACGT 4 cut(s) 160, 259, 1294, 2243
HspAI GCGC 1 cut(s) 2764
Kpn2I TCCGGA 1 cut(s) 817
KpnI GGTACC 2 cut(s) 1009, 1936
Ksp22I TGATCA 3 cut(s) 202, 1114, 2832
Kzo9I GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
LmnI GCTCC 6 cut(s) 69, 1096, 1850, 2200, 2596, 2702
Lsp1109I GCAGC 7 cut(s) 108, 118, 1462, 2254, 2276, 2668, 2943
LweI GCATC 7 cut(s) 65, 467, 1498, 1612, 1646, 2245, 2693
MabI ACCWGGT 1 cut(s) 2146
MaeII ACGT 4 cut(s) 160, 259, 1294, 2243
MaeIII GTNAC 9 cut(s) 185, 235, 1273, 1547, 1985, 2040, 2431, 2910, 2995
MalI GATC 6 cut(s) 204, 990, 1116, 1669, 2834, 3255
MboI GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
MfeI CAATTG 2 cut(s) 356, 2190
MflI RGATCY 1 cut(s) 1667
MhlI GDGCHC 3 cut(s) 74, 1698, 2707
MlyI GAGTC 3 cut(s) 541, 2027, 2446
MmeI TCCRAC 3 cut(s) 458, 1057, 2915
Mph1103I ATGCAT 2 cut(s) 58, 1513
MroI TCCGGA 1 cut(s) 817
MroXI GAANNNNTTC 6 cut(s) 162, 414, 1206, 1654, 2097, 3056
MseI TTAA 3 cut(s) 1062, 2604, 2672
MslI CAYNNNNRTG 3 cut(s) 51, 803, 1134
MspA1I CMGCKG 2 cut(s) 522, 2267
MspI CCGG 5 cut(s) 782, 818, 1472, 1854, 3193
MunI CAATTG 2 cut(s) 356, 2190
MvaI CCWGG 8 cut(s) 254, 567, 713, 1818, 2148, 2660, 2828, 3133
MwoI GCNNNNNNNGC 7 cut(s) 723, 1105, 1693, 2033, 2182, 2264, 2459
NciI CCSGG 2 cut(s) 782, 3194
NcoI CCATGG 1 cut(s) 877
NdeI CATATG 1 cut(s) 1954
NdeII GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
NlaIV GGNNCC 6 cut(s) 786, 1007, 1852, 1934, 2385, 3170
NmuCI GTSAC 4 cut(s) 1985, 2431, 2910, 2995
NsiI ATGCAT 2 cut(s) 58, 1513
NspI RCATGY 4 cut(s) 56, 1139, 1191, 2613
NspV TTCGAA 1 cut(s) 166
PaeI GCATGC 2 cut(s) 56, 1191
PagI TCATGA 2 cut(s) 205, 1212
PdmI GAANNNNTTC 6 cut(s) 162, 414, 1206, 1654, 2097, 3056
PfeI GAWTC 3 cut(s) 2489, 3052, 3066
PflMI CCANNNNNTGG 2 cut(s) 572, 2897
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 8 cut(s) 13, 123, 133, 1477, 2266, 2269, 2683, 2958
PleI GAGTC 3 cut(s) 541, 2026, 2445
PpsI GAGTC 3 cut(s) 541, 2026, 2445
Ppu21I YACGTR 1 cut(s) 1295
PpuMI RGGWCCY 1 cut(s) 3169
Psp5II RGGWCCY 1 cut(s) 3169
Psp6I CCWGG 8 cut(s) 252, 565, 711, 1816, 2146, 2658, 2826, 3131
PspFI CCCAGC 2 cut(s) 1450, 2410
PspGI CCWGG 8 cut(s) 252, 565, 711, 1816, 2146, 2658, 2826, 3131
PspN4I GGNNCC 6 cut(s) 786, 1007, 1852, 1934, 2385, 3170
PspPI GGNCC 7 cut(s) 87, 560, 881, 1015, 1645, 3135, 3169
PspPPI RGGWCCY 1 cut(s) 3169
PstI CTGCAG 4 cut(s) 16, 126, 1387, 2449
PstNI CAGNNNCTG 2 cut(s) 1670, 1750
PsuI RGATCY 1 cut(s) 1667
PvuII CAGCTG 1 cut(s) 2267
RseI CAYNNNNRTG 3 cut(s) 51, 803, 1134
SalI GTCGAC 1 cut(s) 1310
SaqAI TTAA 3 cut(s) 1062, 2604, 2672
SatI GCNGC 8 cut(s) 12, 122, 132, 1476, 2265, 2268, 2682, 2957
Sau3AI GATC 6 cut(s) 202, 988, 1114, 1667, 2832, 3253
Sau96I GGNCC 7 cut(s) 87, 560, 881, 1015, 1645, 3135, 3169
ScaI AGTACT 4 cut(s) 1001, 1331, 2097, 3189
SchI GAGTC 3 cut(s) 541, 2027, 2446
SduI GDGCHC 3 cut(s) 74, 1698, 2707
SexAI ACCWGGT 1 cut(s) 2146
SfaNI GCATC 7 cut(s) 65, 467, 1498, 1612, 1646, 2245, 2693
SfcI CTRYAG 7 cut(s) 12, 122, 1024, 1383, 1781, 2445, 3312
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 6 cut(s) 87, 560, 1015, 1645, 3135, 3169
SmiMI CAYNNNNRTG 3 cut(s) 51, 803, 1134
SmlI CTYRAG 2 cut(s) 284, 623
SmoI CTYRAG 2 cut(s) 284, 623
SnaBI TACGTA 1 cut(s) 1295
SpeI ACTAGT 2 cut(s) 1270, 3283
SphI GCATGC 2 cut(s) 56, 1191
SsiI CCGC 3 cut(s) 522, 918, 2582
SspI AATATT 1 cut(s) 2296
StyI CCWWGG 4 cut(s) 877, 884, 1641, 3223
TaaI ACNGT 6 cut(s) 367, 679, 1028, 1553, 2011, 2317
TaiI ACGT 4 cut(s) 163, 262, 1297, 2246
TaqI TCGA 6 cut(s) 166, 754, 1311, 1777, 2364, 2876
TatI WGTACW 6 cut(s) 999, 1329, 2095, 2303, 2799, 3187
TfiI GAWTC 3 cut(s) 2489, 3052, 3066
Tru1I TTAA 3 cut(s) 1062, 2604, 2672
Tru9I TTAA 3 cut(s) 1062, 2604, 2672
TscAI CASTG 8 cut(s) 131, 696, 1167, 1872, 2202, 2683, 2912, 3220
TseFI GTSAC 4 cut(s) 1985, 2431, 2910, 2995
TseI GCWGC 8 cut(s) 11, 121, 131, 1475, 2264, 2267, 2681, 2956
Tsp45I GTSAC 4 cut(s) 1985, 2431, 2910, 2995
TspRI CASTG 8 cut(s) 131, 696, 1167, 1872, 2202, 2683, 2912, 3220
Van91I CCANNNNNTGG 2 cut(s) 572, 2897
VpaK11BI GGWCC 6 cut(s) 87, 560, 1015, 1645, 3135, 3169
XagI CCTNNNNNAGG 2 cut(s) 962, 3176
XapI RAATTY 6 cut(s) 385, 504, 1488, 1821, 2563, 2730
XbaI TCTAGA 2 cut(s) 1196, 1406
XceI RCATGY 4 cut(s) 56, 1139, 1191, 2613
XmaJI CCTAGG 1 cut(s) 3223
XmiI GTMKAC 3 cut(s) 873, 1311, 2775
XmnI GAANNNNTTC 6 cut(s) 162, 414, 1206, 1654, 2097, 3056
ZrmI AGTACT 4 cut(s) 1001, 1331, 2097, 3189
Zsp2I ATGCAT 2 cut(s) 58, 1513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.