FvH4_4g21390
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
24446848 .. 24454673
7826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21390.t1

Sequence Viewer

Length: 4359 bp
ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTGGCAGAGATTGGGAGGAGCATAAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCAGAAGCACCTCTACTGTCAATGCCACAGACAGTAGAATCGAGGATGATGAAGAATTTTATGACTTGCAGTGGGCTGCGGTTGAGAGATTACCCACTTTCGAGAGGATCACATCGGCTTTGTTTAATGATCATGATGGCGCATCGGCAAAAGGAGATGTCAAGGGGACAAGGGTGATTGATGTTACAAAGATTGGAGCTCAAGAACGGCGTGTTTTCATTGAGAAGCTCATCAAACACATTGAGAATGATAATCTTCAGTTGTTGCAGAAAATCAAAAGAAGAATAGACAAGGTTGGTGTGAAGTCGCCTACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGACTGTATGGTAGTTCACGGCAAGCCCCTACCGACTCTTTGGAATTCTCTAAAGAGTATGATTTCAGACATCACTGAACTAGCAGGTTCAAAAAAACGTGAAGCGAAGATAAGCATCATCAAAGATGTCAGTGGCATTATTAAGCCCGGAAGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCACTCTCAGGGAAGCTAAGCCATTCTCTCAAGGTTTCTGGTGAAATTAGTTACAATGGTTATAAACTGGAAGAATTTGTCCCGGAGAAAACCTCAGCCTATGTAAGCCAATATGATATGCATATTCCAGAGATCACTGTGAGGGAAACACTAGATTTCTCAGCAGGATGTCAAGGTGTAGGAAGCCGACCGGAGATTATGATGGAAGTTAGCAGAAGAGAAAAGCAGGCAGGAATAGTCCCGGATCCTGATGTAGATGCTTACATGAAGGCCATATCGGTAAACGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGATACTTGGCCTTGATATATGTGCTGACACGCTAGTTGGAGATCCCATAAGAAGAGGAATTTCTGGTGGTCAAAAGAAAAGGTTAACTACAGGGGAGATGATTGTTGGACCTGCAAAAGCTGTGTTCATGGATGAAATATCTAATGGCTTAGATAGTTCCACAACTTTCCAAATTGTTTCTTGTCTTCAACATTTTGTGCATATAACAGATGCTACAGCATTGATCTCACTTCTTCAGCCTGCACCAGAGGCATTCGATCTCTTTGATGATGTTCTCTTAATGGCAGAAGGGAAGATTGTGTATCATGGACCAAGAACTTCTACTCTCCAATTTTTTGAGGAGTGTGGATTTAAGTGTCCAGAAAGAAAAGGTGTTGCTGACTTCCTTCAAGAGGTCATCTCTAGAAAAGATCAAGCACAGTTTTGGGATGACACTGCAAAACCATATAGCTATGTTTCTGTTGAGCAGTTCATTCAGAAATTCAAGGATTGCCATCTTGGCAGGAAGTTAGATGTGGATCTTTCAGAGCCATTCGATAAGTCTCAAAGTCACAAAGATGCTCTATCATTTAAAACATACTCATTACCTAAATGGGAACTGTTCAAAGCATGCACAAGGAGGGAATTTCTTTTAATGAAAAGGAATTCTTTCATTTATGTTTTCAAATCAGTTCAGCTAATCATCATTGCTTCAATAACGATGACTGTTTTCCTTCGAACTCAAATGGCTATTGACATGATCCATGGAAATTATTATATGGGTTCTTTGTTCTATGGACTACTGATACTTCTTGTTGATGGGTTTCCAGAGTTGTCAATGACTGTCTCAAGAATTCCGGTTTTCTACAAACAGAAAGAGTTATGTTTCTACCCTGCTTGGGCTTATGCCATCCCAGCTGCCATCCTAAAGGTTCCACTTTCGTTCTTGGAGGCTTTTGTTTGGACTGCTCTTACATATTATGTTATTGGTTACACCCCTGAGGTTGGAAGGTTCTTCCGCCATTTCCTTCTACTATTTGCTACACACCTGACATCTATATCCATGTTTCGATTCATTGCTTCAGTTTTCCAAACTGTTGGTCCTTCTATGACAGCTGGTGTTTCATCTATACTGTTTGTTATGTTATTTGGTGGCTTTGTTATGCCAAAGTCTTATATGCCAGTTTGGTTGAAGTGGGGATATTGGTTGTCTCCTTTGACATATGGAGAAATAGGCATAACAGTTAATGAATTTCGGGCACCTAGGTGGGAAAAGATGTCTGGAAATACAACTCTTGGGAATCAAGTTCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCATTTGGTGCTTTAATGGGATTCACATTACTATTCAACATTGGTTTCACCTTGGCTTTAACTTTCCTAAAGTCTCCTGCAAAGTCCCTTTCGTTTATTTCTTATGAAAAGTACCATCAATTACAAGGTAAAAGAGACGACAGAGGCATTTTAGATGCAGAAGGAAAATCTTTTGGTGAACCTAAGGCTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCTTTTGAGCCCCTAACTGTTTCATTTCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTATGAGCATGACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTATTCTGACAGCATTGATGGGTGTCAGCGGAGCTGGCAAAACAACTCTTATGGATGTTCTTTGTGGAAGAAAAACCGGTGGTACAATTGAAGGAGAAATAAGAATCGGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACTGTGGAAGAATCAGTGGTATATTCGGCTTGGTTGCGACTCCCGTCTCAGATTGATTCAAGGACCAAAGCAGAATTTGTAAATGAGGTTCTTGAAACTATTGAACTTGATGGGATTAAAGATTCCTTGGTAGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGAGCAGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGTTGCAACAGGAAGAACAGTCGTTTGCACCATCCACCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAACAGGAGGACGCATAATCTATTCTGGCCAACTTGGACAGCACTCAAGAATGGTTATTGACTATCTTGAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATTTGCAGAAGCTGACCTTGGTATAGATTTTGCACAAATTTATAGGGAATCTGCCTTGTATAAGAAGAACAATGAGTTAGTCAAGCAAGCGAGTTCACCATCTCCTGGTTCAAAGGATTTGGAGTTTCCTACACGGTATCCACAAAATGGTTGGGAGCAGTTCAAGGCATGCTTTTGGAAACAGAATTTGTCTTACTGGAGAAGTCCCTCGTATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTATTGTTTGGAGCACTGTTCTGGGATCAAGGACAGAAAATACATAGCCAGCAGGAGCTCTTCAATATGATTGGTTTAATGTTCACGGCAATAATCTTCTATGGCATTAACAACTGCTCAACTGTTCTACCGTTTGTTGCAACAGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTTTCTTCATGGGCTTACTCATTCGCGCAGGTCCTGGTTGAGGTTCCCTACTCGTTCACTCAAGCAGTTCTTTACGTGGTCATCACATACCCGATGATTGGCTACCACTGGTCTGCCTATAAGATATTTTGGTCATTCTATAGCATGTTCTGCACATTACTGTACTTCAACTACCTAGGAATGCTGCTCGTGTCCTTGACACCAAATGCTCAAGTGGCTGCAATTGTGGCATCATCTTCCTACACAATGGTGAACTTGTTTTCAGGGTTCATTGTTCCGAGACCACAAATCCCAAAGTGGTGGCTCTGGTTATATTATTTGTCTCCTACATCATGGGCGCTAAACGGGATGCTTACTTCTCAGTATGGAGATGTGCAGAAAAAAATCGTGGTGTTTGGAGAGACGAAAACTGTTGCTGCTTTTTTAGAAGATTACTTTGGGTATCACCACAACCTGTTAGGCCTTGTTGCTGTTGTTCAGCTTCTCTTCCCCATTGTGTTTGCTTCTCTGTTTGCATACTTCATTGGAAAACTGAACTTCCAAAAGAGATAG

Protein Analysis

1453

Amino Acids

163.59

Weight (kDa)

7.72

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 192 - 373 1.8e-17 ABC transporter
ABC2_membrane PF01061 527 - 738 3.2e-43 ABC-2 type transporter
PDR_assoc PF08370 743 - 800 7.4e-24 Plant PDR ABC transporter associated
ABC_tran PF00005 880 - 1032 4e-20 ABC transporter
ABC2_membrane PF01061 1177 - 1391 2.2e-60 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 720
Acc36I ACCTGC 3 cut(s) 527, 1099, 3826
AccB1I GGYRCC 2 cut(s) 2218, 3316
AccB7I CCANNNNNTGG 3 cut(s) 3095, 3479, 3521
AccII CGCG 2 cut(s) 2280, 3833
AciI CCGC 5 cut(s) 182, 1978, 2278, 2280, 2697
AclWI GGATC 9 cut(s) 218, 896, 909, 1016, 1506, 1714, 3595, 3608, 3657
AcoI YGGCCR 1 cut(s) 3259
AcuI CTGAAG 3 cut(s) 344, 1199, 2025
AfaI GTAC 5 cut(s) 955, 2426, 2571, 2752, 3971
AgeI ACCGGT 1 cut(s) 2744
AjnI CCWGG 4 cut(s) 2665, 3310, 3478, 3840
AjuI GAANNNNNNNTTGG 4 cut(s) 3375, 3407, 4227, 4259
AleI CACNNNNGTG 2 cut(s) 2224, 4055
Alw21I GWGCWC 3 cut(s) 304, 3640, 3684
Alw26I GTCTC 9 cut(s) 1527, 1810, 2175, 2391, 2442, 2907, 4081, 4134, 4202
AlwI GGATC 9 cut(s) 218, 896, 909, 1016, 1506, 1714, 3595, 3608, 3657
AlwNI CAGNNNCTG 2 cut(s) 3386, 3841
AoxI GGCC 6 cut(s) 622, 927, 988, 2663, 3259, 4267
ApeKI GCWGC 7 cut(s) 179, 1877, 3113, 3116, 3991, 4025, 4223
ArsI GACNNNNNNTTYG 2 cut(s) 2044, 2076
AsiGI ACCGGT 1 cut(s) 2744
Asp700I GAANNNNTTC 2 cut(s) 1628, 3808
AspA2I CCTAGG 2 cut(s) 2222, 3982
AspLEI GCGC 3 cut(s) 245, 3835, 4147
AspS9I GGNCC 6 cut(s) 623, 1088, 1289, 2060, 2919, 3838
AsuC2I CCSGG 4 cut(s) 600, 630, 740, 899
AsuHPI GGTGA 7 cut(s) 289, 710, 2353, 2501, 3462, 4069, 4244
AsuII TTCGAA 2 cut(s) 85, 1696
AvaII GGWCC 5 cut(s) 1088, 1289, 2060, 2919, 3838
AvrII CCTAGG 2 cut(s) 2222, 3982
AxyI CCTNAGG 3 cut(s) 1959, 2496, 2787
BaeGI GKGCMC 2 cut(s) 2221, 3321
BalI TGGCCA 1 cut(s) 3261
BamHI GGATCC 2 cut(s) 901, 3600
BanI GGYRCC 2 cut(s) 2218, 3316
BanII GRGCYC 3 cut(s) 304, 2547, 3684
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BauI CACGAG 2 cut(s) 3108, 3995
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 3 cut(s) 304, 3640, 3684
BbvCI CCTCAGC 1 cut(s) 751
BbvI GCAGC 7 cut(s) 166, 1864, 3103, 3125, 3978, 4012, 4210
BceAI ACGGC 3 cut(s) 326, 487, 3726
BciT130I CCWGG 4 cut(s) 2667, 3312, 3480, 3842
BciVI GTATCC 3 cut(s) 2793, 3317, 3522
BclI TGATCA 1 cut(s) 232
BcnI CCSGG 4 cut(s) 600, 630, 740, 899
BcoDI GTCTC 9 cut(s) 1527, 1810, 2175, 2391, 2442, 2907, 4081, 4134, 4202
BfaI CTAG 8 cut(s) 533, 809, 1013, 1383, 2223, 2502, 3041, 3983
BfmI CTRYAG 3 cut(s) 1068, 1194, 3946
BfoI RGCGCY 1 cut(s) 4148
BfuAI ACCTGC 3 cut(s) 527, 1099, 3826
BfuI GTATCC 3 cut(s) 2793, 3317, 3522
BglI GCCNNNNNGGC 1 cut(s) 1479
BisI GCNGC 8 cut(s) 180, 1878, 2278, 3114, 3117, 3992, 4026, 4224
BlnI CCTAGG 2 cut(s) 2222, 3982
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 8 cut(s) 181, 1879, 2279, 3115, 3118, 3993, 4027, 4225
Bme1390I CCNGG 8 cut(s) 600, 630, 740, 899, 2667, 3312, 3480, 3842
Bme18I GGWCC 5 cut(s) 1088, 1289, 2060, 2919, 3838
BmgT120I GGNCC 6 cut(s) 623, 1088, 1289, 2060, 2919, 3838
BmiI GGNNCC 6 cut(s) 903, 1893, 2220, 3318, 3602, 3852
BmrFI CCNGG 8 cut(s) 600, 630, 740, 899, 2667, 3312, 3480, 3842
BmsI GCATC 9 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4046, 4146
BoxI GACNNNNGTC 1 cut(s) 2899
BpiI GAAGAC 1 cut(s) 1157
BplI GAGNNNNNCTC 4 cut(s) 734, 766, 1364, 1396
BpmI CTGGAG 2 cut(s) 2615, 3592
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 2 cut(s) 85, 1696
BpuEI CTTGAG 8 cut(s) 82, 288, 671, 1792, 3262, 3320, 3852, 4002
BpuMI CCSGG 4 cut(s) 600, 630, 740, 899
BsaAI YACGTR 1 cut(s) 3883
BsaBI GATNNNNATC 3 cut(s) 566, 1473, 1497
BsaI GGTCTC 1 cut(s) 4081
BsaJI CCNNGG 9 cut(s) 1723, 2222, 2278, 2364, 2982, 3310, 3311, 3391, 3982
BsaWI WCCGGW 3 cut(s) 847, 1816, 2744
Bse118I RCCGGY 1 cut(s) 2744
Bse1I ACTGG 4 cut(s) 729, 2141, 3575, 3920
Bse21I CCTNAGG 3 cut(s) 1959, 2496, 2787
Bse3DI GCAATG 2 cut(s) 1665, 2034
Bse8I GATNNNNATC 3 cut(s) 566, 1473, 1497
BseBI CCWGG 4 cut(s) 2667, 3312, 3480, 3842
BseDI CCNNGG 9 cut(s) 1723, 2222, 2278, 2364, 2982, 3310, 3311, 3391, 3982
BseJI GATNNNNATC 3 cut(s) 566, 1473, 1497
BseMI GCAATG 2 cut(s) 1665, 2034
BseMII CTCAG 9 cut(s) 20, 678, 765, 831, 1950, 2918, 3009, 3633, 4181
BseNI ACTGG 4 cut(s) 729, 2141, 3575, 3920
BseRI GAGGAG 2 cut(s) 79, 1334
BseSI GKGCMC 2 cut(s) 2221, 3321
BseXI GCAGC 7 cut(s) 166, 1864, 3103, 3125, 3978, 4012, 4210
BseYI CCCAGC 1 cut(s) 1873
BsgI GTGCAG 3 cut(s) 1206, 3943, 4202
Bsh1236I CGCG 2 cut(s) 2280, 3833
Bsh1285I CGRYCG 1 cut(s) 848
BshFI GGCC 6 cut(s) 624, 929, 990, 2665, 3261, 4269
BshNI GGYRCC 2 cut(s) 2218, 3316
BshTI ACCGGT 1 cut(s) 2744
BsiEI CGRYCG 1 cut(s) 848
BsiHKAI GWGCWC 3 cut(s) 304, 3640, 3684
BsiSI CCGG 8 cut(s) 600, 629, 740, 848, 899, 1817, 2745, 3344
BslFI GGGAC 5 cut(s) 283, 722, 881, 2383, 3564
BsmAI GTCTC 9 cut(s) 1527, 1810, 2175, 2391, 2442, 2907, 4081, 4134, 4202
BsmBI CGTCTC 3 cut(s) 2442, 2907, 4202
BsmFI GGGAC 5 cut(s) 283, 722, 881, 2383, 3564
BsmI GAATGC 3 cut(s) 1232, 2657, 3993
BsnI GGCC 6 cut(s) 624, 929, 990, 2665, 3261, 4269
Bso31I GGTCTC 1 cut(s) 4081
Bsp119I TTCGAA 2 cut(s) 85, 1696
Bsp1286I GDGCHC 6 cut(s) 304, 2221, 2547, 3321, 3640, 3684
Bsp1407I TGTACA 1 cut(s) 2569
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 1 cut(s) 1723
BspACI CCGC 5 cut(s) 182, 1978, 2278, 2280, 2697
BspANI GGCC 6 cut(s) 624, 929, 990, 2665, 3261, 4269
BspCNI CTCAG 9 cut(s) 19, 677, 764, 830, 1951, 2917, 3010, 3632, 4180
BspFNI CGCG 2 cut(s) 2280, 3833
BspHI TCATGA 2 cut(s) 235, 3228
BspLI GGNNCC 6 cut(s) 903, 1893, 2220, 3318, 3602, 3852
BspMI ACCTGC 3 cut(s) 527, 1099, 3826
BspPI GGATC 9 cut(s) 218, 896, 909, 1016, 1506, 1714, 3595, 3608, 3657
BspQI GCTCTTC 1 cut(s) 3689
BspT104I TTCGAA 2 cut(s) 85, 1696
BspT107I GGYRCC 2 cut(s) 2218, 3316
BspTNI GGTCTC 1 cut(s) 4081
BsrDI GCAATG 2 cut(s) 1665, 2034
BsrFI RCCGGY 1 cut(s) 2744
BsrGI TGTACA 1 cut(s) 2569
BsrI ACTGG 4 cut(s) 729, 2141, 3575, 3920
BssAI RCCGGY 1 cut(s) 2744
BssECI CCNNGG 9 cut(s) 1723, 2222, 2278, 2364, 2982, 3310, 3311, 3391, 3982
BssSI CACGAG 2 cut(s) 3108, 3995
BssT1I CCWWGG 6 cut(s) 1723, 2222, 2364, 2982, 3391, 3982
Bst2BI CACGAG 2 cut(s) 3108, 3995
Bst2UI CCWGG 4 cut(s) 2667, 3312, 3480, 3842
Bst6I CTCTTC 4 cut(s) 868, 1027, 3689, 4298
BstAPI GCANNNNNTGC 1 cut(s) 3957
BstAUI TGTACA 1 cut(s) 2569
BstBAI YACGTR 1 cut(s) 3883
BstBI TTCGAA 2 cut(s) 85, 1696
BstC8I GCNNGC 9 cut(s) 51, 476, 885, 1221, 1591, 2704, 3462, 3544, 3674
BstDSI CCRYGG 2 cut(s) 1723, 2278
BstENI CCTNNNNNAGG 2 cut(s) 1370, 3845
BstFNI CGCG 2 cut(s) 2280, 3833
BstH2I RGCGCY 1 cut(s) 4148
BstHHI GCGC 3 cut(s) 245, 3835, 4147
BstMAI GTCTC 9 cut(s) 1527, 1810, 2175, 2391, 2442, 2907, 4081, 4134, 4202
BstMCI CGRYCG 1 cut(s) 848
BstNI CCWGG 4 cut(s) 2667, 3312, 3480, 3842
BstNSI RCATGY 3 cut(s) 1593, 3546, 3955
BstPAI GACNNNNGTC 1 cut(s) 2899
BstSCI CCNGG 8 cut(s) 598, 628, 738, 897, 2665, 3310, 3478, 3840
BstSFI CTRYAG 3 cut(s) 1068, 1194, 3946
BstSLI GKGCMC 2 cut(s) 2221, 3321
BstUI CGCG 2 cut(s) 2280, 3833
BstV1I GCAGC 7 cut(s) 166, 1864, 3103, 3125, 3978, 4012, 4210
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 4 cut(s) 901, 1021, 1498, 3600
BstXI CCANNNNNNTGG 2 cut(s) 2057, 4107
BstYI RGATCY 4 cut(s) 901, 1021, 1498, 3600
Bsu36I CCTNAGG 3 cut(s) 1959, 2496, 2787
BsuI GTATCC 3 cut(s) 2793, 3317, 3522
BsuRI GGCC 6 cut(s) 624, 929, 990, 2665, 3261, 4269
BtgI CCRYGG 2 cut(s) 1723, 2278
BtsI GCAGTG 3 cut(s) 179, 1413, 3141
BveI ACCTGC 3 cut(s) 527, 1099, 3826
Cac8I GCNNGC 9 cut(s) 51, 476, 885, 1221, 1591, 2704, 3462, 3544, 3674
CaiI CAGNNNCTG 2 cut(s) 3386, 3841
CciI TCATGA 2 cut(s) 235, 3228
CfoI GCGC 3 cut(s) 245, 3835, 4147
Cfr10I RCCGGY 1 cut(s) 2744
Cfr13I GGNCC 6 cut(s) 623, 1088, 1289, 2060, 2919, 3838
Cfr42I CCGCGG 1 cut(s) 2281
CseI GACGC 1 cut(s) 3252
Csp6I GTAC 5 cut(s) 954, 2425, 2570, 2751, 3970
CspAI ACCGGT 1 cut(s) 2744
CviQI GTAC 5 cut(s) 954, 2425, 2570, 2751, 3970
DraI TTTAAA 1 cut(s) 1552
EaeI YGGCCR 1 cut(s) 3259
Eam1104I CTCTTC 4 cut(s) 868, 1027, 3689, 4298
EarI CTCTTC 4 cut(s) 868, 1027, 3689, 4298
EciI GGCGGA 1 cut(s) 1967
Ecl136II GAGCTC 2 cut(s) 302, 3682
Eco130I CCWWGG 6 cut(s) 1723, 2222, 2364, 2982, 3391, 3982
Eco147I AGGCCT 1 cut(s) 4269
Eco24I GRGCYC 3 cut(s) 304, 2547, 3684
Eco31I GGTCTC 1 cut(s) 4081
Eco32I GATATC 2 cut(s) 2313, 2814
Eco47I GGWCC 5 cut(s) 1088, 1289, 2060, 2919, 3838
Eco53kI GAGCTC 2 cut(s) 302, 3682
Eco57I CTGAAG 3 cut(s) 344, 1199, 2025
Eco81I CCTNAGG 3 cut(s) 1959, 2496, 2787
EcoICRI GAGCTC 2 cut(s) 302, 3682
EcoNI CCTNNNNNAGG 2 cut(s) 1370, 3845
EcoO109I RGGNCCY 1 cut(s) 3838
EcoRI GAATTC 3 cut(s) 496, 1624, 1812
EcoRII CCWGG 4 cut(s) 2665, 3310, 3478, 3840
EcoRV GATATC 2 cut(s) 2313, 2814
EcoT14I CCWWGG 6 cut(s) 1723, 2222, 2364, 2982, 3391, 3982
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 3 cut(s) 304, 2547, 3684
ErhI CCWWGG 6 cut(s) 1723, 2222, 2364, 2982, 3391, 3982
Esp3I CGTCTC 3 cut(s) 2442, 2907, 4202
FalI AAGNNNNNCTT 8 cut(s) 1612, 1644, 3375, 3407, 3530, 3562, 3861, 3893
FaqI GGGAC 5 cut(s) 283, 722, 881, 2383, 3564
FauNDI CATATG 1 cut(s) 2182
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 8 cut(s) 180, 1878, 2278, 3114, 3117, 3992, 4026, 4224
FriOI GRGCYC 3 cut(s) 304, 2547, 3684
Fsp4HI GCNGC 8 cut(s) 180, 1878, 2278, 3114, 3117, 3992, 4026, 4224
FspBI CTAG 8 cut(s) 533, 809, 1013, 1383, 2223, 2502, 3041, 3983
GlaI GCGC 3 cut(s) 244, 3834, 4146
GluI GCNGC 8 cut(s) 180, 1878, 2278, 3114, 3117, 3992, 4026, 4224
GsaI CCCAGC 1 cut(s) 1877
GsuI CTGGAG 2 cut(s) 2615, 3592
HaeII RGCGCY 1 cut(s) 4148
HaeIII GGCC 6 cut(s) 624, 929, 990, 2665, 3261, 4269
HapII CCGG 8 cut(s) 600, 629, 740, 848, 899, 1817, 2745, 3344
HgaI GACGC 1 cut(s) 3252
HhaI GCGC 3 cut(s) 245, 3835, 4147
Hin6I GCGC 3 cut(s) 243, 3833, 4145
HinP1I GCGC 3 cut(s) 243, 3833, 4145
HincII GTYRAC 3 cut(s) 1065, 2584, 3036
HindII GTYRAC 3 cut(s) 1065, 2584, 3036
HpaI GTTAAC 1 cut(s) 1065
HpaII CCGG 8 cut(s) 600, 629, 740, 848, 899, 1817, 2745, 3344
HphI GGTGA 7 cut(s) 289, 710, 2353, 2501, 3462, 4069, 4244
Hpy188I TCNGA 8 cut(s) 107, 520, 1458, 1507, 2644, 2676, 2907, 4086
HpyCH4IV ACGT 3 cut(s) 550, 3025, 3882
HpySE526I ACGT 3 cut(s) 550, 3025, 3882
HspAI GCGC 3 cut(s) 243, 3833, 4145
Ksp22I TGATCA 1 cut(s) 232
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 2281
LguI GCTCTTC 1 cut(s) 3689
LmnI GCTCC 9 cut(s) 17, 66, 299, 2634, 2640, 2699, 3529, 3635, 3679
Lsp1109I GCAGC 7 cut(s) 166, 1864, 3103, 3125, 3978, 4012, 4210
LweI GCATC 9 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4046, 4146
MaeI CTAG 8 cut(s) 533, 809, 1013, 1383, 2223, 2502, 3041, 3983
MaeII ACGT 3 cut(s) 550, 3025, 3882
MaeIII GTNAC 5 cut(s) 286, 707, 1529, 1949, 3364
MfeI CAATTG 2 cut(s) 2754, 4029
MflI RGATCY 4 cut(s) 901, 1021, 1498, 3600
MhlI GDGCHC 6 cut(s) 304, 2221, 2547, 3321, 3640, 3684
MlsI TGGCCA 1 cut(s) 3261
MluNI TGGCCA 1 cut(s) 3261
MlyI GAGTC 3 cut(s) 41, 481, 2889
MmeI TCCRAC 3 cut(s) 997, 1066, 1945
Mox20I TGGCCA 1 cut(s) 3261
Mph1103I ATGCAT 1 cut(s) 780
MroXI GAANNNNTTC 2 cut(s) 1628, 3808
MscI TGGCCA 1 cut(s) 3261
MslI CAYNNNNRTG 5 cut(s) 1536, 2224, 2292, 3077, 4055
Msp20I TGGCCA 1 cut(s) 3261
MspA1I CMGCKG 6 cut(s) 1877, 2075, 2280, 2697, 3116, 3623
MspI CCGG 8 cut(s) 600, 629, 740, 848, 899, 1817, 2745, 3344
MspR9I CCNGG 8 cut(s) 600, 630, 740, 899, 2667, 3312, 3480, 3842
MunI CAATTG 2 cut(s) 2754, 4029
Mva1269I GAATGC 3 cut(s) 1232, 2657, 3993
MvaI CCWGG 4 cut(s) 2667, 3312, 3480, 3842
MvnI CGCG 2 cut(s) 2280, 3833
NciI CCSGG 4 cut(s) 600, 630, 740, 899
NcoI CCATGG 1 cut(s) 1723
NdeI CATATG 1 cut(s) 2182
NlaIV GGNNCC 6 cut(s) 903, 1893, 2220, 3318, 3602, 3852
NmuCI GTSAC 1 cut(s) 1529
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 3 cut(s) 1593, 3546, 3955
NspV TTCGAA 2 cut(s) 85, 1696
OliI CACNNNNGTG 2 cut(s) 2224, 4055
PaeI GCATGC 2 cut(s) 1593, 3546
PagI TCATGA 2 cut(s) 235, 3228
PasI CCCWGGG 1 cut(s) 3311
PceI AGGCCT 1 cut(s) 4269
PciSI GCTCTTC 1 cut(s) 3689
PctI GAATGC 3 cut(s) 1232, 2657, 3993
PdmI GAANNNNTTC 2 cut(s) 1628, 3808
PflMI CCANNNNNTGG 3 cut(s) 3095, 3479, 3521
PfoI TCCNGGA 2 cut(s) 738, 897
PinAI ACCGGT 1 cut(s) 2744
PkrI GCNGC 8 cut(s) 181, 1879, 2279, 3115, 3118, 3993, 4027, 4225
PleI GAGTC 3 cut(s) 40, 481, 2889
PpsI GAGTC 3 cut(s) 40, 481, 2889
Ppu21I YACGTR 1 cut(s) 3883
PpuMI RGGWCCY 1 cut(s) 3838
PshAI GACNNNNGTC 1 cut(s) 2899
PsiI TTATAA 1 cut(s) 720
Psp124BI GAGCTC 2 cut(s) 304, 3684
Psp5II RGGWCCY 1 cut(s) 3838
Psp6I CCWGG 4 cut(s) 2665, 3310, 3478, 3840
PspFI CCCAGC 1 cut(s) 1873
PspGI CCWGG 4 cut(s) 2665, 3310, 3478, 3840
PspN4I GGNNCC 6 cut(s) 903, 1893, 2220, 3318, 3602, 3852
PspPI GGNCC 6 cut(s) 623, 1088, 1289, 2060, 2919, 3838
PspPPI RGGWCCY 1 cut(s) 3838
PsrI GAACNNNNNNTAC 2 cut(s) 2928, 2960
PstNI CAGNNNCTG 2 cut(s) 3386, 3841
PsuI RGATCY 4 cut(s) 901, 1021, 1498, 3600
PvuII CAGCTG 4 cut(s) 1877, 2075, 3116, 3623
RsaI GTAC 5 cut(s) 955, 2426, 2571, 2752, 3971
RsaNI GTAC 5 cut(s) 954, 2425, 2570, 2751, 3970
RseI CAYNNNNRTG 5 cut(s) 1536, 2224, 2292, 3077, 4055
SacI GAGCTC 2 cut(s) 304, 3684
SacII CCGCGG 1 cut(s) 2281
SapI GCTCTTC 1 cut(s) 3689
SatI GCNGC 8 cut(s) 180, 1878, 2278, 3114, 3117, 3992, 4026, 4224
Sau96I GGNCC 6 cut(s) 623, 1088, 1289, 2060, 2919, 3838
SchI GAGTC 3 cut(s) 41, 481, 2889
ScrFI CCNGG 8 cut(s) 600, 630, 740, 899, 2667, 3312, 3480, 3842
SduI GDGCHC 6 cut(s) 304, 2221, 2547, 3321, 3640, 3684
SfaNI GCATC 9 cut(s) 254, 576, 904, 1180, 1528, 2458, 3094, 4046, 4146
SfcI CTRYAG 3 cut(s) 1068, 1194, 3946
Sfr303I CCGCGG 1 cut(s) 2281
SfuI TTCGAA 2 cut(s) 85, 1696
SgrBI CCGCGG 1 cut(s) 2281
SinI GGWCC 5 cut(s) 1088, 1289, 2060, 2919, 3838
SmiMI CAYNNNNRTG 5 cut(s) 1536, 2224, 2292, 3077, 4055
SmlI CTYRAG 8 cut(s) 97, 303, 686, 1807, 3277, 3299, 3867, 4017
SmoI CTYRAG 8 cut(s) 97, 303, 686, 1807, 3277, 3299, 3867, 4017
SphI GCATGC 2 cut(s) 1593, 3546
SseBI AGGCCT 1 cut(s) 4269
SsiI CCGC 5 cut(s) 182, 1978, 2278, 2280, 2697
SspMI CTAG 8 cut(s) 533, 809, 1013, 1383, 2223, 2502, 3041, 3983
SstI GAGCTC 2 cut(s) 304, 3684
StuI AGGCCT 1 cut(s) 4269
StyD4I CCNGG 8 cut(s) 598, 628, 738, 897, 2665, 3310, 3478, 3840
StyI CCWWGG 6 cut(s) 1723, 2222, 2364, 2982, 3391, 3982
TaiI ACGT 3 cut(s) 553, 3028, 3885
TaqI TCGA 9 cut(s) 85, 144, 204, 1236, 1515, 1696, 2029, 2292, 3787
TatI WGTACW 3 cut(s) 953, 2569, 3969
TauI GCSGC 1 cut(s) 2280
TseFI GTSAC 1 cut(s) 1529
TseI GCWGC 7 cut(s) 179, 1877, 3113, 3116, 3991, 4025, 4223
Tsp45I GTSAC 1 cut(s) 1529
TspGWI ACGGA 3 cut(s) 957, 3613, 3787
Van91I CCANNNNNTGG 3 cut(s) 3095, 3479, 3521
VpaK11BI GGWCC 5 cut(s) 1088, 1289, 2060, 2919, 3838
XagI CCTNNNNNAGG 2 cut(s) 1370, 3845
XbaI TCTAGA 1 cut(s) 1382
XceI RCATGY 3 cut(s) 1593, 3546, 3955
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 3522
XmaJI CCTAGG 2 cut(s) 2222, 3982
XmnI GAANNNNTTC 2 cut(s) 1628, 3808
XspI CTAG 8 cut(s) 533, 809, 1013, 1383, 2223, 2502, 3041, 3983
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.