Rh4AG272900
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
58897583 .. 58904911
7329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG272900.1

Sequence Viewer

Length: 3894 bp
ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTAGCAGAGATTGGGAGGAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCAGTTGAGAGACTACCAACTTTTGAGAGGATCACATCAGCTTTGTTTGATGATCATGATGGCGCATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAACGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAGAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTTCACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTCCGGACATCACTGAACTAGTAGGTTCAAAAAAACGTGAAGCGAAGATAAGCATCATCAAAGATGTCAGTGGCATTATTAAGCCGGGAAGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCGCTCTCAGGAAAGCTAAGCCATTCTCTCAAGGTTTCTGGCGAAATTAGTTACAATGGTTATAGACTTGAAGAATTTGTTCCGGAGAAAACCTCAGCCTATGTAGGCCAATATGATATGCATATTCCAGAGATCACTGTAAGGGAAACACTAGATTTCTCTGCAGGCTGTCAAGGTGTAGGAAGCCGACCCGAGATTATGATGGAAGTTAGTAGAAGAGAAAAGCAGGCAGGAATAGTCCCGGATTCTGATGTAGATGCTTACATGAAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGATACTTGGCCTTGATATATGTGCTGACACGCTGGTTGGAGATCCCATAAGAAGAGGAATATCTGGTGGTCAAAAGAAAAGGTTAACTACAGGGGAGATGATTGTTGGACCTGCAAAAGCTGTTTTCATGGATGAAATATCTAATGGCTTAGATAGTTCCACAACTTTCCAAATTGTTTCTTGTCTTCAACATTTTGTGCATATAACAGACGCTACATCATTGATCTCACTTCTTCAGCCTGCACCAGAGACGTTCAATCTCTTTGATGATGTTCTCTTAATGGCAGAAGGGAAGATTGTGTATCATGGACCAAGAACTTCTATCCTCCAATTTTTTGAGGAGTGTGGATTTAAGTGTCCAGAAAGAAAAGGTGTTGCTGACTTCCTTCAGGAGGTTATCTCTAGAAAAGATCAAGCACAGTTTTGGGACGGCACAGAAAAACCATATAGCTACTTTTCTGTTGATCAGTTCATTGAGAAATTCAAGGATTGCCATCTTGGCAGGAAGCTAGATGTGGATCTCTCAGAGCCATTCGATAAGTCTCAAAGCCACAAAGATGCTCTATCCTTTAAAAGATACTCATTACCTAAATGGGAACTGTTTAAAGCATGCACAAGGAGGGAATTTCTTTTAATGAAAAGGAATTCTTTCATTTATGTTTTCAAATCAGTTCAGCTAGTCATCATTTCTTCTATAACGATGACTGTTTTCCTTCGAACTCAAATGGCTATTGACATGATCCATGCAAATTATTATATGGGCTCTTTGTTCTTTGCACTTGTGATACTTCTTGTTGATGGATTCCCAGAATTGTCAATGACTGTCTCAAGAATTGTGGTTTTCTACAAACAGAGAGAGTTGTGTTTTTACCCTGCTTGGGCTTATGCGATCCCAGCTGCCATCCTAAAGGTTCCACTTTCGCTCTTGGAGGCTTTTGTTTGGACTGCTCTTACATACTATGTTATTGGTTACAGCCCTGAGGTTGGAAGGTTCTTCCGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCGATATCCATGTTTCGGTTTATTGCTTCAGTTTTCCAAACTGCCGGTCCTTCTATGACAGCTGGTGTTTTATCAATATTGTTTGTTATGTTATTTGGTGGCTTTGTTATGCCAAAGCCTTATATGCCAGTTTGGTTGAAGTGGGGATTTTGGGTGTCTCCTTTGACATATGGAGAAATAGGCATAACAGTAAATGAATTTCTGGCACCTCGGTGGGAAAAGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTTGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCCCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTAGATGCAGAGGGAAAATCCACCGGTGAACCTAAGACTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTTTGAGCATAACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTGTTCTGACAGCATTAATGGGTGTCAGCGGAGCTGGCAAAACAACTCTCATGGATGTTCTTTGTGGACGAAAAACCGGTGGTACAATTGAAGGAGAAATAAGAATCAGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACCGTGGAAGAATCAGTAGTATATTCTGCTTGGTTGCGGCTCCCGTCTCAGATTGATTCAAAGACCAAAGCAGAATTTGTAAACGAGGTTCTTGAAACTATTGAACTTGATGGGATTAAAGATTCCTTGGTAGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGGGCGGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGTTACAACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAATTGGAGGACGCATAATCTATTCTGGCCAACTTGGACGGCACTCAACCATGGTTATTGAGTATCTTGAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATCTGCAGAAGCTGACCTTGGTATAGATTTTGCACAAATTTATAGGGAATCGGCCTTGTATGAGAAGAACAAGGAGTTAGTCAAGCAAGCGAGTTCACCGTCTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACAAAATGGTTGGGGGCAGTTCAAAGCATGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCGTATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTGTTGTTTGGAACACTGTACTGGAATCAAGGAGAGAAAATAAATAACCAGCAGGAGCTCTTCAATGTGTTTGGTTCAATGTTCGTGGCAATAATCTTCTTTGGCATTTACAATAGCACAACAGTTCTACCATTTGTTGCAACAGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTCTCTTCATGGGCCTATTCATTCGCACAGGTTCAGATCTTTTCGACTAAATTTCCTCATGAACTCATCCATAAACTCTGGTCATGA

Protein Analysis

1297

Amino Acids

145.78

Weight (kDa)

7.28

Isoelectric Point (pI)

41.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 192 - 373 4.2e-17 ABC transporter
ABC2_membrane_7 PF19055 406 - 459 9.9e-06 ABC-2 type transporter
ABC2_membrane PF01061 527 - 738 7.8e-42 ABC-2 type transporter
PDR_assoc PF08370 743 - 801 2.1e-25 Plant PDR ABC transporter associated
ABC_tran PF00005 880 - 1032 1.3e-20 ABC transporter
ABC2_membrane PF01061 1178 - 1280 1.2e-22 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1099
AccB1I GGYRCC 2 cut(s) 2218, 3316
AccB7I CCANNNNNTGG 3 cut(s) 492, 3095, 3521
AccII CGCG 1 cut(s) 2280
AccIII TCCGGA 2 cut(s) 517, 739
AciI CCGC 7 cut(s) 1978, 2278, 2280, 2697, 2893, 3113, 3508
AclWI GGATC 7 cut(s) 218, 1016, 1506, 1714, 1864, 3595, 3608
AcoI YGGCCR 1 cut(s) 3259
AcuI CTGAAG 4 cut(s) 344, 1199, 1352, 2025
AfaI GTAC 5 cut(s) 955, 2426, 2571, 2752, 3644
AgeI ACCGGT 2 cut(s) 2486, 2744
AhlI ACTAGT 2 cut(s) 532, 2501
AjnI CCWGG 4 cut(s) 2389, 2665, 3310, 3478
AjuI GAANNNNNNNTTGG 2 cut(s) 3375, 3407
AleI CACNNNNGTG 1 cut(s) 2224
Alw21I GWGCWC 2 cut(s) 304, 3684
AlwI GGATC 7 cut(s) 218, 1016, 1506, 1714, 1864, 3595, 3608
AlwNI CAGNNNCTG 1 cut(s) 3386
Ama87I CYCGRG 1 cut(s) 848
Aor13HI TCCGGA 2 cut(s) 517, 739
AoxI GGCC 8 cut(s) 622, 763, 927, 988, 2663, 3259, 3426, 3819
ApeKI GCWGC 3 cut(s) 179, 1877, 3116
ArsI GACNNNNNNTTYG 2 cut(s) 2044, 2076
AseI ATTAAT 1 cut(s) 2684
AsiGI ACCGGT 2 cut(s) 2486, 2744
Asp700I GAANNNNTTC 2 cut(s) 735, 1628
AspLEI GCGC 2 cut(s) 245, 661
AspS9I GGNCC 5 cut(s) 623, 1088, 1289, 2060, 3819
AsuC2I CCSGG 3 cut(s) 600, 630, 899
AsuHPI GGTGA 3 cut(s) 2353, 2501, 3462
AsuII TTCGAA 2 cut(s) 85, 1696
AsuNHI GCTAGC 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 848
AvaII GGWCC 3 cut(s) 1088, 1289, 2060
AxyI CCTNAGG 2 cut(s) 1959, 2787
BaeGI GKGCMC 1 cut(s) 3321
BalI TGGCCA 1 cut(s) 3261
BamHI GGATCC 1 cut(s) 3600
BanI GGYRCC 2 cut(s) 2218, 3316
BanII GRGCYC 4 cut(s) 304, 1745, 2547, 3684
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 1 cut(s) 1157
Bbv12I GWGCWC 2 cut(s) 304, 3684
BbvCI CCTCAGC 1 cut(s) 751
BbvI GCAGC 3 cut(s) 166, 1864, 3103
BceAI ACGGC 4 cut(s) 326, 487, 1426, 3287
BciT130I CCWGG 4 cut(s) 2391, 2667, 3312, 3480
BciVI GTATCC 2 cut(s) 2793, 3317
BclI TGATCA 2 cut(s) 232, 1444
BcnI CCSGG 3 cut(s) 600, 630, 899
BcuI ACTAGT 2 cut(s) 532, 2501
BfaI CTAG 9 cut(s) 50, 273, 533, 809, 1383, 1490, 1658, 2502, 3041
BfmI CTRYAG 4 cut(s) 180, 819, 1068, 3378
BfoI RGCGCY 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 1099
BfuI GTATCC 2 cut(s) 2793, 3317
BglI GCCNNNNNGGC 1 cut(s) 1479
BglII AGATCT 1 cut(s) 3843
BisI GCNGC 6 cut(s) 180, 1878, 2278, 2894, 3114, 3117
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 6 cut(s) 181, 1879, 2279, 2895, 3115, 3118
Bme1390I CCNGG 7 cut(s) 600, 630, 899, 2391, 2667, 3312, 3480
Bme18I GGWCC 3 cut(s) 1088, 1289, 2060
BmeT110I CYCGRG 1 cut(s) 848
BmgT120I GGNCC 5 cut(s) 623, 1088, 1289, 2060, 3819
BmiI GGNNCC 5 cut(s) 1893, 2220, 2897, 3318, 3602
BmrFI CCNGG 7 cut(s) 600, 630, 899, 2391, 2667, 3312, 3480
BmsI GCATC 6 cut(s) 254, 576, 904, 1528, 2458, 3094
BmtI GCTAGC 1 cut(s) 53
BpiI GAAGAC 1 cut(s) 1157
BplI GAGNNNNNCTC 4 cut(s) 734, 766, 1364, 1396
BpmI CTGGAG 1 cut(s) 2615
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 2 cut(s) 85, 1696
BpuEI CTTGAG 5 cut(s) 82, 288, 671, 1792, 3320
BpuMI CCSGG 3 cut(s) 600, 630, 899
Bsa29I ATCGAT 1 cut(s) 2015
BsaBI GATNNNNATC 3 cut(s) 566, 1473, 1497
BsaJI CCNNGG 9 cut(s) 2222, 2278, 2364, 2859, 2982, 3282, 3310, 3311, 3391
BsaWI WCCGGW 4 cut(s) 517, 739, 2486, 2744
Bse118I RCCGGY 3 cut(s) 2057, 2486, 2744
Bse1I ACTGG 2 cut(s) 2141, 3650
Bse21I CCTNAGG 2 cut(s) 1959, 2787
Bse3DI GCAATG 1 cut(s) 179
Bse8I GATNNNNATC 3 cut(s) 566, 1473, 1497
BseAI TCCGGA 2 cut(s) 517, 739
BseBI CCWGG 4 cut(s) 2391, 2667, 3312, 3480
BseCI ATCGAT 1 cut(s) 2015
BseDI CCNNGG 9 cut(s) 2222, 2278, 2364, 2859, 2982, 3282, 3310, 3311, 3391
BseGI GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 3873
BseJI GATNNNNATC 3 cut(s) 566, 1473, 1497
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 8 cut(s) 20, 678, 765, 1518, 1950, 2918, 3009, 3633
BseNI ACTGG 2 cut(s) 2141, 3650
BseRI GAGGAG 2 cut(s) 79, 1334
BseSI GKGCMC 1 cut(s) 3321
BseXI GCAGC 3 cut(s) 166, 1864, 3103
BseYI CCCAGC 1 cut(s) 1873
BsgI GTGCAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 2280
BshFI GGCC 8 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3821
BshNI GGYRCC 2 cut(s) 2218, 3316
BshTI ACCGGT 2 cut(s) 2486, 2744
BshVI ATCGAT 1 cut(s) 2015
BsiHKAI GWGCWC 2 cut(s) 304, 3684
BsiHKCI CYCGRG 1 cut(s) 848
BslFI GGGAC 5 cut(s) 283, 881, 1421, 2383, 3564
BsmBI CGTCTC 4 cut(s) 1223, 2442, 2907, 3480
BsmFI GGGAC 5 cut(s) 283, 881, 1421, 2383, 3564
BsmI GAATGC 1 cut(s) 2657
BsnI GGCC 8 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3821
BsoBI CYCGRG 1 cut(s) 848
Bsp119I TTCGAA 2 cut(s) 85, 1696
Bsp1286I GDGCHC 5 cut(s) 304, 1745, 2547, 3321, 3684
Bsp13I TCCGGA 2 cut(s) 517, 739
Bsp1407I TGTACA 1 cut(s) 2569
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 1 cut(s) 3282
BspACI CCGC 7 cut(s) 1978, 2278, 2280, 2697, 2893, 3113, 3508
BspANI GGCC 8 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3821
BspCNI CTCAG 8 cut(s) 19, 677, 764, 1517, 1951, 2917, 3010, 3632
BspDI ATCGAT 1 cut(s) 2015
BspEI TCCGGA 2 cut(s) 517, 739
BspFNI CGCG 1 cut(s) 2280
BspHI TCATGA 4 cut(s) 235, 3228, 3865, 3890
BspLI GGNNCC 5 cut(s) 1893, 2220, 2897, 3318, 3602
BspMAI CTGCAG 3 cut(s) 184, 823, 3382
BspMI ACCTGC 1 cut(s) 1099
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 7 cut(s) 218, 1016, 1506, 1714, 1864, 3595, 3608
BspQI GCTCTTC 1 cut(s) 3689
BspT104I TTCGAA 2 cut(s) 85, 1696
BspT107I GGYRCC 2 cut(s) 2218, 3316
BsrDI GCAATG 1 cut(s) 179
BsrFI RCCGGY 3 cut(s) 2057, 2486, 2744
BsrGI TGTACA 1 cut(s) 2569
BsrI ACTGG 2 cut(s) 2141, 3650
BssAI RCCGGY 3 cut(s) 2057, 2486, 2744
BssECI CCNNGG 9 cut(s) 2222, 2278, 2364, 2859, 2982, 3282, 3310, 3311, 3391
BssT1I CCWWGG 4 cut(s) 2364, 2982, 3282, 3391
Bst2UI CCWGG 4 cut(s) 2391, 2667, 3312, 3480
Bst6I CTCTTC 4 cut(s) 868, 1027, 3689, 3817
BstAUI TGTACA 1 cut(s) 2569
BstBI TTCGAA 2 cut(s) 85, 1696
BstC8I GCNNGC 9 cut(s) 51, 476, 823, 885, 1221, 1591, 2704, 3462, 3544
BstDSI CCRYGG 3 cut(s) 2278, 2859, 3282
BstENI CCTNNNNNAGG 1 cut(s) 1370
BstF5I GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 3873
BstFNI CGCG 1 cut(s) 2280
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 2 cut(s) 245, 661
BstMWI GCNNNNNNNGC 7 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113
BstNI CCWGG 4 cut(s) 2391, 2667, 3312, 3480
BstNSI RCATGY 2 cut(s) 1593, 3546
BstSCI CCNGG 7 cut(s) 598, 628, 897, 2389, 2665, 3310, 3478
BstSFI CTRYAG 4 cut(s) 180, 819, 1068, 3378
BstSLI GKGCMC 1 cut(s) 3321
BstUI CGCG 1 cut(s) 2280
BstV1I GCAGC 3 cut(s) 166, 1864, 3103
BstV2I GAAGAC 1 cut(s) 1157
BstX2I RGATCY 4 cut(s) 1021, 1498, 3600, 3843
BstYI RGATCY 4 cut(s) 1021, 1498, 3600, 3843
Bsu15I ATCGAT 1 cut(s) 2015
Bsu36I CCTNAGG 2 cut(s) 1959, 2787
BsuI GTATCC 2 cut(s) 2793, 3317
BsuRI GGCC 8 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3821
BsuTUI ATCGAT 1 cut(s) 2015
BtgI CCRYGG 3 cut(s) 2278, 2859, 3282
BtsCI GGATG 8 cut(s) 1117, 1881, 2532, 2728, 3088, 3177, 3360, 3873
BtsI GCAGTG 1 cut(s) 3141
BtsIMutI CAGTG 8 cut(s) 414, 525, 589, 792, 2782, 3015, 3141, 3638
BveI ACCTGC 1 cut(s) 1099
Cac8I GCNNGC 9 cut(s) 51, 476, 823, 885, 1221, 1591, 2704, 3462, 3544
CaiI CAGNNNCTG 1 cut(s) 3386
CciI TCATGA 4 cut(s) 235, 3228, 3865, 3890
CfoI GCGC 2 cut(s) 245, 661
Cfr10I RCCGGY 3 cut(s) 2057, 2486, 2744
Cfr13I GGNCC 5 cut(s) 623, 1088, 1289, 2060, 3819
Cfr42I CCGCGG 1 cut(s) 2281
ClaI ATCGAT 1 cut(s) 2015
CseI GACGC 2 cut(s) 1199, 3252
Csp6I GTAC 5 cut(s) 954, 2425, 2570, 2751, 3643
CspAI ACCGGT 2 cut(s) 2486, 2744
CspCI CAANNNNNGTGG 4 cut(s) 1797, 1832, 3690, 3725
CviQI GTAC 5 cut(s) 954, 2425, 2570, 2751, 3643
DraI TTTAAA 2 cut(s) 1552, 1585
EaeI YGGCCR 1 cut(s) 3259
Eam1104I CTCTTC 4 cut(s) 868, 1027, 3689, 3817
EarI CTCTTC 4 cut(s) 868, 1027, 3689, 3817
EciI GGCGGA 1 cut(s) 1967
Ecl136II GAGCTC 2 cut(s) 302, 3682
Eco130I CCWWGG 4 cut(s) 2364, 2982, 3282, 3391
Eco24I GRGCYC 4 cut(s) 304, 1745, 2547, 3684
Eco32I GATATC 3 cut(s) 2019, 2313, 2814
Eco47I GGWCC 3 cut(s) 1088, 1289, 2060
Eco53kI GAGCTC 2 cut(s) 302, 3682
Eco57I CTGAAG 4 cut(s) 344, 1199, 1352, 2025
Eco81I CCTNAGG 2 cut(s) 1959, 2787
Eco88I CYCGRG 1 cut(s) 848
EcoICRI GAGCTC 2 cut(s) 302, 3682
EcoNI CCTNNNNNAGG 1 cut(s) 1370
EcoRI GAATTC 2 cut(s) 496, 1624
EcoRII CCWGG 4 cut(s) 2389, 2665, 3310, 3478
EcoRV GATATC 3 cut(s) 2019, 2313, 2814
EcoT14I CCWWGG 4 cut(s) 2364, 2982, 3282, 3391
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 4 cut(s) 304, 1745, 2547, 3684
ErhI CCWWGG 4 cut(s) 2364, 2982, 3282, 3391
Esp3I CGTCTC 4 cut(s) 1223, 2442, 2907, 3480
FalI AAGNNNNNCTT 6 cut(s) 1612, 1644, 2597, 2629, 3375, 3407
FaqI GGGAC 5 cut(s) 283, 881, 1421, 2383, 3564
FauI CCCGC 1 cut(s) 3515
FauNDI CATATG 1 cut(s) 2182
FbaI TGATCA 2 cut(s) 232, 1444
Fnu4HI GCNGC 6 cut(s) 180, 1878, 2278, 2894, 3114, 3117
FokI GGATG 8 cut(s) 1124, 1868, 2539, 2735, 3095, 3164, 3367, 3860
FriOI GRGCYC 4 cut(s) 304, 1745, 2547, 3684
Fsp4HI GCNGC 6 cut(s) 180, 1878, 2278, 2894, 3114, 3117
FspBI CTAG 9 cut(s) 50, 273, 533, 809, 1383, 1490, 1658, 2502, 3041
GlaI GCGC 2 cut(s) 244, 660
GluI GCNGC 6 cut(s) 180, 1878, 2278, 2894, 3114, 3117
GsaI CCCAGC 1 cut(s) 1877
GsuI CTGGAG 1 cut(s) 2615
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 8 cut(s) 624, 765, 929, 990, 2665, 3261, 3428, 3821
HgaI GACGC 2 cut(s) 1199, 3252
HhaI GCGC 2 cut(s) 245, 661
Hin6I GCGC 2 cut(s) 243, 659
HinP1I GCGC 2 cut(s) 243, 659
HincII GTYRAC 3 cut(s) 1065, 2584, 3036
HindII GTYRAC 3 cut(s) 1065, 2584, 3036
HpaI GTTAAC 1 cut(s) 1065
HphI GGTGA 3 cut(s) 2353, 2501, 3462
Hpy188I TCNGA 7 cut(s) 107, 907, 1507, 2644, 2676, 2907, 3843
HpyCH4IV ACGT 3 cut(s) 550, 1232, 3025
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113
HpySE526I ACGT 3 cut(s) 550, 1232, 3025
HspAI GCGC 2 cut(s) 243, 659
Kpn2I TCCGGA 2 cut(s) 517, 739
Ksp22I TGATCA 2 cut(s) 232, 1444
KspAI GTTAAC 1 cut(s) 1065
KspI CCGCGG 1 cut(s) 2281
LguI GCTCTTC 1 cut(s) 3689
LmnI GCTCC 8 cut(s) 17, 66, 299, 2634, 2640, 2699, 2901, 3679
Lsp1109I GCAGC 3 cut(s) 166, 1864, 3103
LweI GCATC 6 cut(s) 254, 576, 904, 1528, 2458, 3094
MaeI CTAG 9 cut(s) 50, 273, 533, 809, 1383, 1490, 1658, 2502, 3041
MaeII ACGT 3 cut(s) 550, 1232, 3025
MaeIII GTNAC 6 cut(s) 286, 707, 1949, 2554, 3148, 3364
MfeI CAATTG 1 cut(s) 2754
MflI RGATCY 4 cut(s) 1021, 1498, 3600, 3843
MhlI GDGCHC 5 cut(s) 304, 1745, 2547, 3321, 3684
MlsI TGGCCA 1 cut(s) 3261
MluNI TGGCCA 1 cut(s) 3261
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 3 cut(s) 997, 1066, 1945
Mox20I TGGCCA 1 cut(s) 3261
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 2 cut(s) 517, 739
MroXI GAANNNNTTC 2 cut(s) 735, 1628
MscI TGGCCA 1 cut(s) 3261
MslI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
Msp20I TGGCCA 1 cut(s) 3261
MspA1I CMGCKG 6 cut(s) 364, 1877, 2075, 2280, 2697, 3623
MspR9I CCNGG 7 cut(s) 600, 630, 899, 2391, 2667, 3312, 3480
MunI CAATTG 1 cut(s) 2754
Mva1269I GAATGC 1 cut(s) 2657
MvaI CCWGG 4 cut(s) 2391, 2667, 3312, 3480
MvnI CGCG 1 cut(s) 2280
MwoI GCNNNNNNNGC 7 cut(s) 11, 1479, 1874, 2137, 2626, 2703, 3113
NciI CCSGG 3 cut(s) 600, 630, 899
NcoI CCATGG 1 cut(s) 3282
NdeI CATATG 1 cut(s) 2182
NheI GCTAGC 1 cut(s) 49
NlaIV GGNNCC 5 cut(s) 1893, 2220, 2897, 3318, 3602
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 2 cut(s) 1593, 3546
NspV TTCGAA 2 cut(s) 85, 1696
OliI CACNNNNGTG 1 cut(s) 2224
PaeI GCATGC 2 cut(s) 1593, 3546
PagI TCATGA 4 cut(s) 235, 3228, 3865, 3890
PasI CCCWGGG 1 cut(s) 3311
PciSI GCTCTTC 1 cut(s) 3689
PctI GAATGC 1 cut(s) 2657
PdmI GAANNNNTTC 2 cut(s) 735, 1628
PflMI CCANNNNNTGG 3 cut(s) 492, 3095, 3521
PfoI TCCNGGA 2 cut(s) 897, 2389
PinAI ACCGGT 2 cut(s) 2486, 2744
PkrI GCNGC 6 cut(s) 181, 1879, 2279, 2895, 3115, 3118
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 2684
Psp124BI GAGCTC 2 cut(s) 304, 3684
Psp6I CCWGG 4 cut(s) 2389, 2665, 3310, 3478
PspFI CCCAGC 1 cut(s) 1873
PspGI CCWGG 4 cut(s) 2389, 2665, 3310, 3478
PspN4I GGNNCC 5 cut(s) 1893, 2220, 2897, 3318, 3602
PspPI GGNCC 5 cut(s) 623, 1088, 1289, 2060, 3819
PsrI GAACNNNNNNTAC 2 cut(s) 2928, 2960
PstI CTGCAG 3 cut(s) 184, 823, 3382
PstNI CAGNNNCTG 1 cut(s) 3386
PsuI RGATCY 4 cut(s) 1021, 1498, 3600, 3843
PvuII CAGCTG 4 cut(s) 364, 1877, 2075, 3623
RsaI GTAC 5 cut(s) 955, 2426, 2571, 2752, 3644
RsaNI GTAC 5 cut(s) 954, 2425, 2570, 2751, 3643
RseI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
SacI GAGCTC 2 cut(s) 304, 3684
SacII CCGCGG 1 cut(s) 2281
SapI GCTCTTC 1 cut(s) 3689
SatI GCNGC 6 cut(s) 180, 1878, 2278, 2894, 3114, 3117
Sau96I GGNCC 5 cut(s) 623, 1088, 1289, 2060, 3819
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 7 cut(s) 600, 630, 899, 2391, 2667, 3312, 3480
SduI GDGCHC 5 cut(s) 304, 1745, 2547, 3321, 3684
SfaNI GCATC 6 cut(s) 254, 576, 904, 1528, 2458, 3094
SfcI CTRYAG 4 cut(s) 180, 819, 1068, 3378
Sfr303I CCGCGG 1 cut(s) 2281
SfuI TTCGAA 2 cut(s) 85, 1696
SgrAI CRCCGGYG 1 cut(s) 2486
SgrBI CCGCGG 1 cut(s) 2281
SinI GGWCC 3 cut(s) 1088, 1289, 2060
SmiMI CAYNNNNRTG 4 cut(s) 1536, 2224, 2292, 3077
SmlI CTYRAG 5 cut(s) 97, 303, 686, 1807, 3299
SmoI CTYRAG 5 cut(s) 97, 303, 686, 1807, 3299
SpeI ACTAGT 2 cut(s) 532, 2501
SphI GCATGC 2 cut(s) 1593, 3546
SsiI CCGC 7 cut(s) 1978, 2278, 2280, 2697, 2893, 3113, 3508
SspI AATATT 3 cut(s) 161, 2091, 2353
SspMI CTAG 9 cut(s) 50, 273, 533, 809, 1383, 1490, 1658, 2502, 3041
SstI GAGCTC 2 cut(s) 304, 3684
StyD4I CCNGG 7 cut(s) 598, 628, 897, 2389, 2665, 3310, 3478
StyI CCWWGG 4 cut(s) 2364, 2982, 3282, 3391
TaiI ACGT 3 cut(s) 553, 1235, 3028
TaqI TCGA 7 cut(s) 85, 1515, 1696, 2015, 2292, 3787, 3851
TatI WGTACW 3 cut(s) 953, 2569, 3642
TauI GCSGC 3 cut(s) 2280, 2896, 3116
TscAI CASTG 8 cut(s) 421, 532, 589, 799, 2782, 3022, 3141, 3645
TseI GCWGC 3 cut(s) 179, 1877, 3116
TspGWI ACGGA 2 cut(s) 3613, 3787
TspRI CASTG 8 cut(s) 421, 532, 589, 799, 2782, 3022, 3141, 3645
Van91I CCANNNNNTGG 3 cut(s) 492, 3095, 3521
VpaK11BI GGWCC 3 cut(s) 1088, 1289, 2060
VspI ATTAAT 1 cut(s) 2684
XagI CCTNNNNNAGG 1 cut(s) 1370
XbaI TCTAGA 1 cut(s) 1382
XceI RCATGY 2 cut(s) 1593, 3546
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 3522
XmnI GAANNNNTTC 2 cut(s) 735, 1628
XspI CTAG 9 cut(s) 50, 273, 533, 809, 1383, 1490, 1658, 2502, 3041
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.