Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000472

Physical Location & Seq

Genomic Coordinates Reverse (-)

37457765 .. 37458478

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0216600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAACCACGAACTCTGCAACTGATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCTACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGACCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAAATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGCCAGCTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCAACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0008150 GO:0008643 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0033231 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

5.86

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	8.4e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca	FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica	MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica	Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis	pycom111g03460 pycom16g12210
rosa_chinensis	RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata	RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora	Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa	Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha	Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana	Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AclWI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
AcsI	RAATTY	1 cut(s)	550
AfaI	GTAC	2 cut(s)	352, 595
AfiI	CCNNNNNNNGG	3 cut(s)	353, 437, 688
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	580, 664
AhlI	ACTAGT	2 cut(s)	338, 467
AjnI	CCWGG	3 cut(s)	116, 346, 653
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	4 cut(s)	31, 223, 386, 434
AluI	AGCT	4 cut(s)	31, 223, 386, 434
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	380, 428
ApeKI	GCWGC	2 cut(s)	74, 317
ApoI	RAATTY	1 cut(s)	550
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
AseI	ATTAAT	1 cut(s)	495
Asp700I	GAANNNNTTC	3 cut(s)	340, 537, 668
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	4 cut(s)	147, 380, 428, 462
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	643, 703
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	147, 462
BaeGI	GKGCMC	1 cut(s)	330
BamHI	GGATCC	3 cut(s)	359, 407, 440
BanII	GRGCYC	1 cut(s)	286
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	4 cut(s)	19, 50, 419, 476
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	118, 348, 655
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	2 cut(s)	338, 467
BfaI	CTAG	2 cut(s)	339, 468
BfmI	CTRYAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	187
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	2 cut(s)	75, 318
BlsI	GCNGC	2 cut(s)	76, 319
Bme1390I	CCNGG	4 cut(s)	79, 118, 348, 655
Bme18I	GGWCC	2 cut(s)	147, 462
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	147, 380, 428, 462
BmiI	GGNNCC	9 cut(s)	6, 126, 149, 269, 361, 409, 442, 463, 511
BmrFI	CCNGG	4 cut(s)	79, 118, 348, 655
BpmI	CTGGAG	2 cut(s)	117, 203
BpuEI	CTTGAG	2 cut(s)	137, 306
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 437, 688
Bse1I	ACTGG	5 cut(s)	229, 358, 400, 529, 591
BseBI	CCWGG	3 cut(s)	118, 348, 655
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	2 cut(s)	61, 625
BseLI	CCNNNNNNNGG	3 cut(s)	353, 437, 688
BseNI	ACTGG	5 cut(s)	229, 358, 400, 529, 591
BseRI	GAGGAG	2 cut(s)	656, 659
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	382, 430
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	353, 437, 688
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	382, 430
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	286, 330
Bsp143I	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
Bsp19I	CCATGG	1 cut(s)	330
BspANI	GGCC	2 cut(s)	382, 430
BspHI	TCATGA	1 cut(s)	710
BspLI	GGNNCC	9 cut(s)	6, 126, 149, 269, 361, 409, 442, 463, 511
BspPI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 483
BsrI	ACTGG	5 cut(s)	229, 358, 400, 529, 591
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	3 cut(s)	118, 348, 655
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	384, 432
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	61, 625
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	9 cut(s)	139, 160, 213, 362, 370, 410, 443, 491, 651
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
BstNI	CCWGG	3 cut(s)	118, 348, 655
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	4 cut(s)	77, 116, 346, 653
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	86, 304
BstX2I	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BstYI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BsuRI	GGCC	2 cut(s)	382, 430
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	61, 625
Cac8I	GCNNGC	2 cut(s)	384, 432
CciI	TCATGA	1 cut(s)	710
CfoI	GCGC	1 cut(s)	186
Cfr13I	GGNCC	4 cut(s)	147, 380, 428, 462
Csp6I	GTAC	2 cut(s)	351, 594
CviAII	CATG	5 cut(s)	239, 331, 684, 688, 711
CviQI	GTAC	2 cut(s)	351, 594
DpnI	GATC	9 cut(s)	138, 159, 212, 361, 369, 409, 442, 490, 650
DpnII	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
DraI	TTTAAA	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	286
Eco47I	GGWCC	2 cut(s)	147, 462
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	3 cut(s)	116, 346, 653
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	689
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	5 cut(s)	242, 334, 687, 691, 714
FaiI	YATR	8 cut(s)	201, 234, 240, 332, 562, 685, 689, 712
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	5 cut(s)	238, 330, 683, 687, 710
Fnu4HI	GCNGC	2 cut(s)	75, 318
FokI	GGATG	2 cut(s)	68, 612
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	75, 318
FspBI	CTAG	2 cut(s)	339, 468
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	2 cut(s)	75, 318
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	2 cut(s)	382, 430
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	242, 334, 687, 691, 714
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	2 cut(s)	643, 703
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188III	TCNNGA	6 cut(s)	134, 206, 271, 287, 542, 711
Hpy8I	GTNNAC	1 cut(s)	465
HpyAV	CCTTC	2 cut(s)	527, 679
HpyCH4V	TGCA	4 cut(s)	19, 309, 633, 687
Hsp92II	CATG	5 cut(s)	242, 334, 687, 691, 714
HspAI	GCGC	1 cut(s)	184
Kzo9I	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	2 cut(s)	86, 304
MaeI	CTAG	2 cut(s)	339, 468
MalI	GATC	9 cut(s)	138, 159, 212, 361, 369, 409, 442, 490, 650
MboI	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
MboII	GAAGA	2 cut(s)	313, 558
MflI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
MhlI	GDGCHC	2 cut(s)	286, 330
MluCI	AATT	4 cut(s)	373, 421, 454, 550
Mph1103I	ATGCAT	1 cut(s)	689
MroXI	GAANNNNTTC	3 cut(s)	340, 537, 668
MseI	TTAA	3 cut(s)	180, 495, 548
MspA1I	CMGCKG	3 cut(s)	223, 386, 434
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	4 cut(s)	79, 118, 348, 655
MvaI	CCWGG	3 cut(s)	118, 348, 655
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
NlaIII	CATG	5 cut(s)	242, 334, 687, 691, 714
NlaIV	GGNNCC	9 cut(s)	6, 126, 149, 269, 361, 409, 442, 463, 511
NsiI	ATGCAT	1 cut(s)	689
NspI	RCATGY	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	285
PagI	TCATGA	1 cut(s)	710
PciI	ACATGT	1 cut(s)	238
PdmI	GAANNNNTTC	3 cut(s)	340, 537, 668
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	2 cut(s)	76, 319
PpuMI	RGGWCCY	1 cut(s)	147
PscI	ACATGT	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	495
Psp5II	RGGWCCY	1 cut(s)	147
Psp6I	CCWGG	3 cut(s)	116, 346, 653
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	116, 346, 653
PspN4I	GGNNCC	9 cut(s)	6, 126, 149, 269, 361, 409, 442, 463, 511
PspPI	GGNCC	4 cut(s)	147, 380, 428, 462
PspPPI	RGGWCCY	1 cut(s)	147
PsuI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
PvuII	CAGCTG	3 cut(s)	223, 386, 434
RsaI	GTAC	2 cut(s)	352, 595
RsaNI	GTAC	2 cut(s)	351, 594
SaqAI	TTAA	3 cut(s)	180, 495, 548
SatI	GCNGC	2 cut(s)	75, 318
Sau3AI	GATC	9 cut(s)	136, 157, 210, 359, 367, 407, 440, 488, 648
Sau96I	GGNCC	4 cut(s)	147, 380, 428, 462
ScrFI	CCNGG	4 cut(s)	79, 118, 348, 655
SduI	GDGCHC	2 cut(s)	286, 330
SetI	ASST	6 cut(s)	33, 122, 225, 308, 388, 436
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	147, 462
SlaI	CTCGAG	1 cut(s)	285
SmiI	ATTTAAAT	1 cut(s)	549
SmlI	CTYRAG	3 cut(s)	152, 285, 321
SmoI	CTYRAG	3 cut(s)	152, 285, 321
SpeI	ACTAGT	2 cut(s)	338, 467
Sse9I	AATT	4 cut(s)	373, 421, 454, 550
SspMI	CTAG	2 cut(s)	339, 468
StyD4I	CCNGG	4 cut(s)	77, 116, 346, 653
StyI	CCWWGG	1 cut(s)	330
SwaI	ATTTAAAT	1 cut(s)	549
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	4 cut(s)	373, 421, 454, 550
TatI	WGTACW	1 cut(s)	593
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	3 cut(s)	180, 495, 548
Tru9I	TTAA	3 cut(s)	180, 495, 548
TseI	GCWGC	2 cut(s)	74, 317
TspDTI	ATGAA	3 cut(s)	314, 546, 549
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	147, 462
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	1 cut(s)	550
XceI	RCATGY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	3 cut(s)	340, 537, 668
XspI	CTAG	2 cut(s)	339, 468
Zsp2I	ATGCAT	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.