RchiOBHm_Chr2g0169331

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000472
Physical Location & Seq
Forward (+)
83532431 .. 83540029
7599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53692

Sequence Viewer

Length: 3942 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAGGTTGAGTTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCAGCTATGACAAAGAGGAAGATGATCATGAAGGTAAGACTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACACAGATATTTGGGTGCAAGTCTCAAGCATACAAACTAGAAATTCTAAAACAAGTCAGTGGCATCATCAAGCCTTCAAGGATGACTCTATTACTTGGTCCTCCAAGCTGTGGGAAAACCACCTTATTACAGGCACTTGCAGGAAAACTTAACCACTCTCTCAAGGTTCAAGGAGAAATAACTTACAATGGTTATAAGATGAACGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGCTGCCAGGGTATTGGAAGCAGAGCCGATATTATGAAAGAAGTTGCTAGAAGAGAGAACCAAGCTGGTATTGTCCCAGAACCAGACATTGACGCTTATATGAAGATCCTTGGGCTGGATATTTGTGCTGATACAATCGTAGGGGATGCAATGCAAAGAGGAATCTCCGGCGGTCAAAAGAAAAGGCTGACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACTTTTCAAATTGTAACTTGTCTGCAGCAGTTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACTTTTCATCTGTTTGATGATATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGACCTAGTGACAATGTTGTGGAGTTCTTTCAGGAGTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAGGAGGCAAGAGTCCTTGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTCCCATAAAGACCAACCCTATAGGTATGTCAGTGTTGATAAGTTCGTAAATATGTTTAAAGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAACTTTGCAAGCCTTTCGATCAATCTGAGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGATTCTCATGAAGCGAAACTCATTTGTTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAATAACAATGACAATCTTTTCACGTACATGGATGAAAATCGACGAGACCCATGCAAAGTACTACATGAGTTCTTTGTTTTATGCTCTACTTAGACTGCTCTGCATTGGAATTGCAGAGATATCAATGACTGCCTCTAGACTTGCAGTCTTCTATAAGCAAAGAGATTTCTACTTCTATCCTGCATGGGCTTATTCTCTTCCAGCTGCCATTCTAAAGATTCCATTCTCATTGCTAGATGCATTTCTTTGGACAGCCCTCACTTATTATGTTATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTTTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTCGCTTCTCTACCTGCTTGGTTGGCATGGGGATTTTGGGTTTCTCCATTGGCCTTTGCAGAACTAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTGATGCAGGACTTCTCCTTCTCATTAAATGAAATCAGATTAATGTACCTTAATATGTTAAGTGTTCATATCAATGCTCCCTTTTTCTTACAGGTTTTATCTTCCAATGTCACTATAGGCCAGCAAGCTCTAATTAACCATGGTCTAAACTTCAGTGACTACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGTTTTTCAACCTTGGATTCACATGCATACTCAGTTATTCAAAGTGCATGGTGTTACCTTTTGAGCCCATAAGTATATCATTTGAGAAACTGCATTACTTTATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGCTCATTTAGACCTGCGATTCTCACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACGACACTGATGGATGTTCTTTCAGGAAGAAAAACTGGTGGAATTATTGAAGGGGACATTAGAATTGGAGGGTTCCCAAAAGTCCAAGAAACATATGCCAGAATATCGGGGTATTGCGAGCAAAGTGACATACATTCTCCAGAGCTTACAGTAGAAGAATCAGTCGCATACTCAGCCTGGTTACGCTTGCCATCCCAGATTGATAGAAATACTAGAGCTGAGTTTGTGCAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCGACTGAACAGCGTAAAAGGTTAACAATAGCAGTAGAGCTTGTTTCAAATCCATCAATAATATTCATGGATGAACCCACGTCTGGTTTAGATGCAAGAGCAGCTGCAATAATTATGCGAGTTGTGAAAAATATCGTCAGTACAGGGAGGACTATTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCATTCGACGAGCTTATTTTGATGAAAAGAGGAGGACAAATAATATACTGTGGAGAGCTGGGTCAAGATTCAAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAATTACAACCCAGCAACATGGATGTTAGAAGTCACAAGTCCTTCTGCAGAAGCCAAACTGGCCTTAGATTTTGCTCAGCTTTATAGAGAATCACATCTATGCCAAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATTGGTAACTGTTCCTCTGTTTTACCATTTGTCACTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTTTCACAGGTGATCATTGAACTTCCGTATATATTACTTCAGGCAGTTATCTTTTCGACCATTACATATCCAACCATTGGTTTCCACTGGTCACTTTACAAAGTATTCTGGTATGTGTACGCTATGTTTTGTACACTGCTCTATTTCACTTACTTCGGTATATTGGTTGCTTCTGCCACCCCAACTTTCCAAGTGGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATTTAAACAAGGAAATTGTACTCCGCGGGGAAGAAAAGACTATCAGTTCCTTCTTAGAAAGCATCTATGGATACAGCTATGATGATCTAGGAATTGTAGGAACTGTTCTTCTTGCATATCCACTAGTTTTCGCATTTGCGTTTGCACTTGCTACTGAAAAACTCAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1313

Amino Acids

149.26

Weight (kDa)

6.21

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 337 1.8e-15 ABC transporter
ABC2_membrane_7 PF19055 371 - 449 3.1e-06 ABC-2 type transporter
ABC2_membrane PF01061 496 - 664 3.3e-28 ABC-2 type transporter
PDR_assoc PF08370 730 - 778 1.7e-14 Plant PDR ABC transporter associated
ABC_tran PF00005 817 - 969 2.5e-18 ABC transporter
ABC2_membrane PF01061 1073 - 1252 3.1e-45 ABC-2 type transporter
ABC2_membrane_3 PF12698 1075 - 1271 2.9e-07 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AasI GACNNNNNNGTC 1 cut(s) 1382
Acc36I ACCTGC 2 cut(s) 2002, 2485
AccB7I CCANNNNNTGG 2 cut(s) 584, 3488
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1176, 3366
AccII CGCG 1 cut(s) 3786
AciI CCGC 4 cut(s) 428, 942, 3784, 3786
AclWI GGATC 5 cut(s) 77, 81, 871, 1305, 3289
AcsI RAATTY 3 cut(s) 385, 516, 2063
AcuI CTGAAG 8 cut(s) 60, 1094, 1182, 1867, 2224, 3253, 3434, 3594
AfiI CCNNNNNNNGG 6 cut(s) 584, 886, 1244, 1267, 2906, 3488
AhdI GACNNNNNGTC 1 cut(s) 1724
AhlI ACTAGT 1 cut(s) 3883
AjiI CACGTC 1 cut(s) 2904
AjnI CCWGG 5 cut(s) 252, 777, 1263, 2696, 2806
Alw26I GTCTC 3 cut(s) 501, 1118, 1619
AlwI GGATC 5 cut(s) 77, 81, 871, 1305, 3289
AlwNI CAGNNNCTG 2 cut(s) 1979, 2410
Ama87I CYCGRG 1 cut(s) 3652
AoxI GGCC 5 cut(s) 982, 1021, 2031, 2206, 3204
ApeKI GCWGC 7 cut(s) 11, 131, 774, 1063, 1784, 2924, 2927
ApoI RAATTY 3 cut(s) 385, 516, 2063
ArsI GACNNNNNNTTYG 2 cut(s) 1298, 1330
AseI ATTAAT 1 cut(s) 2129
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1515, 1963, 2757
AspLEI GCGC 1 cut(s) 3357
AspS9I GGNCC 7 cut(s) 36, 572, 983, 1184, 1314, 1954, 3726
AsuHPI GGTGA 4 cut(s) 980, 2101, 3266, 3433
AvaI CYCGRG 1 cut(s) 3652
AvaII GGWCC 6 cut(s) 36, 572, 1184, 1314, 1954, 3726
BaeI ACNNNNGTAYC 2 cut(s) 894, 927
BanII GRGCYC 2 cut(s) 253, 2358
BauI CACGAG 1 cut(s) 1907
BbsI GAAGAC 2 cut(s) 701, 1720
BbvI GCAGC 6 cut(s) 118, 761, 1075, 1771, 2914, 2936
BccI CCATC 5 cut(s) 1150, 2491, 2524, 2719, 2884
BcgI CGANNNNNNTGC 4 cut(s) 1402, 1436, 1613, 1647
BciT130I CCWGG 5 cut(s) 254, 779, 1265, 2698, 2808
BciVI GTATCC 1 cut(s) 3824
BclI TGATCA 2 cut(s) 202, 3423
BcoDI GTCTC 3 cut(s) 501, 1118, 1619
BcuI ACTAGT 1 cut(s) 3883
BfmI CTRYAG 6 cut(s) 12, 1061, 1333, 2202, 2441, 3189
BfuAI ACCTGC 2 cut(s) 2002, 2485
BfuI GTATCC 1 cut(s) 3824
BglI GCCNNNNNGGC 1 cut(s) 3203
BisI GCNGC 8 cut(s) 12, 132, 428, 775, 1064, 1785, 2925, 2928
BlpI GCTNAGC 1 cut(s) 3219
BlsI GCNGC 8 cut(s) 13, 133, 429, 776, 1065, 1786, 2926, 2929
BmcAI AGTACT 3 cut(s) 1310, 1640, 2757
Bme1390I CCNGG 5 cut(s) 254, 779, 1265, 2698, 2808
Bme18I GGWCC 6 cut(s) 36, 572, 1184, 1314, 1954, 3726
BmeRI GACNNNNNGTC 1 cut(s) 1724
BmeT110I CYCGRG 1 cut(s) 3652
BmgBI CACGTC 1 cut(s) 2904
BmgT120I GGNCC 7 cut(s) 36, 572, 983, 1184, 1314, 1954, 3726
BmiI GGNNCC 4 cut(s) 250, 1316, 2594, 3129
BmrFI CCNGG 5 cut(s) 254, 779, 1265, 2698, 2808
BmsI GCATC 9 cut(s) 65, 546, 907, 1807, 1921, 1955, 2082, 2905, 3831
BpiI GAAGAC 2 cut(s) 701, 1720
BpmI CTGGAG 3 cut(s) 163, 1247, 2643
Bpu1102I GCTNAGC 1 cut(s) 3219
BpuEI CTTGAG 3 cut(s) 269, 483, 620
BsaAI YACGTR 1 cut(s) 1604
BsaBI GATNNNNATC 1 cut(s) 1616
BsaI GGTCTC 1 cut(s) 1619
BsaJI CCNNGG 9 cut(s) 252, 778, 880, 1180, 1950, 2075, 2227, 2302, 3784
Bsc4I CCNNNNNNNGG 6 cut(s) 584, 886, 1244, 1267, 2906, 3488
Bse1I ACTGG 7 cut(s) 762, 1316, 2467, 2560, 3207, 3503, 3710
Bse3DI GCAATG 4 cut(s) 927, 1572, 1808, 3364
Bse8I GATNNNNATC 1 cut(s) 1616
BseBI CCWGG 5 cut(s) 254, 779, 1265, 2698, 2808
BseDI CCNNGG 9 cut(s) 252, 778, 880, 1180, 1950, 2075, 2227, 2302, 3784
BseJI GATNNNNATC 1 cut(s) 1616
BseLI CCNNNNNNNGG 6 cut(s) 584, 886, 1244, 1267, 2906, 3488
BseMI GCAATG 4 cut(s) 927, 1572, 1808, 3364
BseMII CTCAG 9 cut(s) 704, 1422, 1463, 2335, 2402, 2706, 2730, 3233, 3342
BseNI ACTGG 7 cut(s) 762, 1316, 2467, 2560, 3207, 3503, 3710
BseRI GAGGAG 2 cut(s) 3063, 3385
BseXI GCAGC 6 cut(s) 118, 761, 1075, 1771, 2914, 2936
BseYI CCCAGC 3 cut(s) 985, 3076, 3154
Bsh1236I CGCG 1 cut(s) 3786
BshFI GGCC 5 cut(s) 984, 1023, 2033, 2208, 3206
BsiHKCI CYCGRG 1 cut(s) 3652
BsiSI CCGG 1 cut(s) 939
BslFI GGGAC 3 cut(s) 830, 1300, 2588
BslI CCNNNNNNNGG 6 cut(s) 584, 886, 1244, 1267, 2906, 3488
BsmAI GTCTC 3 cut(s) 501, 1118, 1619
BsmFI GGGAC 3 cut(s) 830, 1300, 2588
BsmI GAATGC 3 cut(s) 162, 3020, 3273
BsnI GGCC 5 cut(s) 984, 1023, 2033, 2208, 3206
Bso31I GGTCTC 1 cut(s) 1619
BsoBI CYCGRG 1 cut(s) 3652
Bsp1286I GDGCHC 2 cut(s) 253, 2358
Bsp1407I TGTACA 1 cut(s) 3542
Bsp143I GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
Bsp1720I GCTNAGC 1 cut(s) 3219
Bsp19I CCATGG 2 cut(s) 1180, 2227
BspACI CCGC 4 cut(s) 428, 942, 3784, 3786
BspANI GGCC 5 cut(s) 984, 1023, 2033, 2208, 3206
BspCNI CTCAG 9 cut(s) 703, 1423, 1464, 2334, 2403, 2705, 2731, 3232, 3343
BspFNI CGCG 1 cut(s) 3786
BspHI TCATGA 2 cut(s) 205, 1521
BspLI GGNNCC 4 cut(s) 250, 1316, 2594, 3129
BspMAI CTGCAG 3 cut(s) 16, 1065, 3193
BspMI ACCTGC 2 cut(s) 2002, 2485
BspPI GGATC 5 cut(s) 77, 81, 871, 1305, 3289
BspTNI GGTCTC 1 cut(s) 1619
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 927, 1572, 1808, 3364
BsrGI TGTACA 1 cut(s) 3542
BsrI ACTGG 7 cut(s) 762, 1316, 2467, 2560, 3207, 3503, 3710
BssECI CCNNGG 9 cut(s) 252, 778, 880, 1180, 1950, 2075, 2227, 2302, 3784
BssMI GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
BssNAI GTATAC 2 cut(s) 1177, 3367
BssSI CACGAG 1 cut(s) 1907
BssT1I CCWWGG 6 cut(s) 880, 1180, 1950, 2075, 2227, 2302
Bst1107I GTATAC 2 cut(s) 1177, 3367
Bst2BI CACGAG 1 cut(s) 1907
Bst2UI CCWGG 5 cut(s) 254, 779, 1265, 2698, 2808
Bst4CI ACNGT 9 cut(s) 367, 745, 1862, 1981, 2671, 3068, 3323, 3753, 3865
Bst6I CTCTTC 3 cut(s) 817, 1395, 1782
BstAUI TGTACA 1 cut(s) 3542
BstBAI YACGTR 1 cut(s) 1604
BstC8I GCNNGC 7 cut(s) 54, 1415, 1498, 2210, 2214, 2639, 2708
BstDSI CCRYGG 3 cut(s) 1180, 2227, 3784
BstENI CCTNNNNNAGG 1 cut(s) 1265
BstFNI CGCG 1 cut(s) 3786
BstHHI GCGC 1 cut(s) 3357
BstKTI GATC 9 cut(s) 72, 89, 205, 879, 1300, 1426, 3284, 3426, 3847
BstMAI GTCTC 3 cut(s) 501, 1118, 1619
BstMBI GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
BstMWI GCNNNNNNNGC 5 cut(s) 1029, 2003, 2693, 2924, 3203
BstNI CCWGG 5 cut(s) 254, 779, 1265, 2698, 2808
BstNSI RCATGY 4 cut(s) 56, 1448, 1500, 2316
BstSCI CCNGG 5 cut(s) 252, 777, 1263, 2696, 2806
BstSFI CTRYAG 6 cut(s) 12, 1061, 1333, 2202, 2441, 3189
BstUI CGCG 1 cut(s) 3786
BstV1I GCAGC 6 cut(s) 118, 761, 1075, 1771, 2914, 2936
BstV2I GAAGAC 2 cut(s) 701, 1720
BstX2I RGATCY 2 cut(s) 86, 876
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1096, 3162
BstYI RGATCY 2 cut(s) 86, 876
BstZ17I GTATAC 2 cut(s) 1177, 3367
BsuI GTATCC 1 cut(s) 3824
BsuRI GGCC 5 cut(s) 984, 1023, 2033, 2208, 3206
BtgI CCRYGG 3 cut(s) 1180, 2227, 3784
BtrI CACGTC 1 cut(s) 2904
BtsI GCAGTG 2 cut(s) 131, 3545
BtsIMutI CAGTG 9 cut(s) 131, 538, 755, 1351, 1469, 2248, 2525, 3496, 3545
BveI ACCTGC 2 cut(s) 2002, 2485
Cac8I GCNNGC 7 cut(s) 54, 1415, 1498, 2210, 2214, 2639, 2708
CaiI CAGNNNCTG 2 cut(s) 1979, 2410
CciI TCATGA 2 cut(s) 205, 1521
CfoI GCGC 1 cut(s) 3357
Cfr13I GGNCC 7 cut(s) 36, 572, 983, 1184, 1314, 1954, 3726
Cfr42I CCGCGG 1 cut(s) 3787
CseI GACGC 1 cut(s) 872
CsiI ACCWGGT 1 cut(s) 2806
DpnI GATC 9 cut(s) 71, 88, 204, 878, 1299, 1425, 3283, 3425, 3846
DpnII GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
DraI TTTAAA 2 cut(s) 1372, 3765
DrdI GACNNNNNNGTC 1 cut(s) 1382
DriI GACNNNNNGTC 1 cut(s) 1724
DseDI GACNNNNNNGTC 1 cut(s) 1382
Eam1104I CTCTTC 3 cut(s) 817, 1395, 1782
Eam1105I GACNNNNNGTC 1 cut(s) 1724
EarI CTCTTC 3 cut(s) 817, 1395, 1782
Eco130I CCWWGG 6 cut(s) 880, 1180, 1950, 2075, 2227, 2302
Eco147I AGGCCT 1 cut(s) 1023
Eco24I GRGCYC 2 cut(s) 253, 2358
Eco31I GGTCTC 1 cut(s) 1619
Eco32I GATATC 3 cut(s) 1014, 1701, 2262
Eco47I GGWCC 6 cut(s) 36, 572, 1184, 1314, 1954, 3726
Eco57I CTGAAG 8 cut(s) 60, 1094, 1182, 1867, 2224, 3253, 3434, 3594
Eco88I CYCGRG 1 cut(s) 3652
EcoNI CCTNNNNNAGG 1 cut(s) 1265
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 5 cut(s) 252, 777, 1263, 2696, 2806
EcoRV GATATC 3 cut(s) 1014, 1701, 2262
EcoT14I CCWWGG 6 cut(s) 880, 1180, 1950, 2075, 2227, 2302
EcoT22I ATGCAT 4 cut(s) 58, 1822, 2318, 3308
EcoT38I GRGCYC 2 cut(s) 253, 2358
ErhI CCWWGG 6 cut(s) 880, 1180, 1950, 2075, 2227, 2302
FalI AAGNNNNNCTT 6 cut(s) 1392, 1424, 1485, 1517, 2742, 2774
FaqI GGGAC 3 cut(s) 830, 1300, 2588
FauI CCCGC 1 cut(s) 3779
FauNDI CATATG 1 cut(s) 2614
FbaI TGATCA 2 cut(s) 202, 3423
FblI GTMKAC 2 cut(s) 1176, 3366
Fnu4HI GCNGC 8 cut(s) 12, 132, 428, 775, 1064, 1785, 2925, 2928
FriOI GRGCYC 2 cut(s) 253, 2358
Fsp4HI GCNGC 8 cut(s) 12, 132, 428, 775, 1064, 1785, 2925, 2928
GlaI GCGC 1 cut(s) 3356
GluI GCNGC 8 cut(s) 12, 132, 428, 775, 1064, 1785, 2925, 2928
GsaI CCCAGC 3 cut(s) 989, 3080, 3158
GsuI CTGGAG 3 cut(s) 163, 1247, 2643
HaeIII GGCC 5 cut(s) 984, 1023, 2033, 2208, 3206
HapII CCGG 1 cut(s) 939
HgaI GACGC 1 cut(s) 872
HhaI GCGC 1 cut(s) 3357
Hin6I GCGC 1 cut(s) 3355
HinP1I GCGC 1 cut(s) 3355
HincII GTYRAC 2 cut(s) 1071, 2847
HindII GTYRAC 2 cut(s) 1071, 2847
HindIII AAGCTT 3 cut(s) 457, 1394, 3095
HpaI GTTAAC 1 cut(s) 2847
HpaII CCGG 1 cut(s) 939
HphI GGTGA 4 cut(s) 980, 2101, 3266, 3433
Hpy166II GTNNAC 7 cut(s) 1071, 1177, 2847, 3257, 3367, 3529, 3545
Hpy8I GTNNAC 7 cut(s) 1071, 1177, 2847, 3257, 3367, 3529, 3545
Hpy99I CGWCG 3 cut(s) 264, 1625, 3029
HpyAV CCTTC 9 cut(s) 203, 290, 558, 1157, 1974, 2116, 2564, 3195, 3820
HpyCH4III ACNGT 9 cut(s) 367, 745, 1862, 1981, 2671, 3068, 3323, 3753, 3865
HpyCH4IV ACGT 4 cut(s) 170, 259, 1603, 2903
HpyF10VI GCNNNNNNNGC 5 cut(s) 1029, 2003, 2693, 2924, 3203
HpySE526I ACGT 4 cut(s) 170, 259, 1603, 2903
HspAI GCGC 1 cut(s) 3355
Ksp22I TGATCA 2 cut(s) 202, 3423
KspAI GTTAAC 1 cut(s) 2847
KspI CCGCGG 1 cut(s) 3787
Kzo9I GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
LmnI GCTCC 7 cut(s) 248, 435, 1037, 2077, 2170, 2270, 2510
Lsp1109I GCAGC 6 cut(s) 118, 761, 1075, 1771, 2914, 2936
LweI GCATC 9 cut(s) 65, 546, 907, 1807, 1921, 1955, 2082, 2905, 3831
MabI ACCWGGT 1 cut(s) 2806
MaeII ACGT 4 cut(s) 170, 259, 1603, 2903
MalI GATC 9 cut(s) 71, 88, 204, 878, 1299, 1425, 3283, 3425, 3846
MbiI CCGCTC 1 cut(s) 430
MboI GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
MflI RGATCY 2 cut(s) 86, 876
MhlI GDGCHC 2 cut(s) 253, 2358
MlyI GAGTC 3 cut(s) 553, 1066, 1284
MmeI TCCRAC 2 cut(s) 1366, 3506
Mph1103I ATGCAT 4 cut(s) 58, 1822, 2318, 3308
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1515, 1963, 2757
MslI CAYNNNNRTG 5 cut(s) 51, 1443, 1606, 2160, 3241
MspA1I CMGCKG 3 cut(s) 1784, 2927, 3786
MspI CCGG 1 cut(s) 939
MspR9I CCNGG 5 cut(s) 254, 779, 1265, 2698, 2808
Mva1269I GAATGC 3 cut(s) 162, 3020, 3273
MvaI CCWGG 5 cut(s) 254, 779, 1265, 2698, 2808
MvnI CGCG 1 cut(s) 3786
MwoI GCNNNNNNNGC 5 cut(s) 1029, 2003, 2693, 2924, 3203
NcoI CCATGG 2 cut(s) 1180, 2227
NdeI CATATG 1 cut(s) 2614
NdeII GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
NlaIV GGNNCC 4 cut(s) 250, 1316, 2594, 3129
NmuCI GTSAC 8 cut(s) 171, 1190, 2197, 2243, 2645, 3175, 3343, 3501
NsiI ATGCAT 4 cut(s) 58, 1822, 2318, 3308
NspI RCATGY 4 cut(s) 56, 1448, 1500, 2316
PaeI GCATGC 2 cut(s) 56, 1500
PagI TCATGA 2 cut(s) 205, 1521
PceI AGGCCT 1 cut(s) 1023
PctI GAATGC 3 cut(s) 162, 3020, 3273
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1515, 1963, 2757
PflMI CCANNNNNTGG 2 cut(s) 584, 3488
PfoI TCCNGGA 1 cut(s) 1263
PkrI GCNGC 8 cut(s) 13, 133, 429, 776, 1065, 1786, 2926, 2929
PleI GAGTC 3 cut(s) 553, 1066, 1283
PpsI GAGTC 3 cut(s) 553, 1066, 1283
Ppu21I YACGTR 1 cut(s) 1604
PpuMI RGGWCCY 1 cut(s) 36
PshBI ATTAAT 1 cut(s) 2129
PsiI TTATAA 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 5 cut(s) 252, 777, 1263, 2696, 2806
PspFI CCCAGC 3 cut(s) 985, 3076, 3154
PspGI CCWGG 5 cut(s) 252, 777, 1263, 2696, 2806
PspN4I GGNNCC 4 cut(s) 250, 1316, 2594, 3129
PspPI GGNCC 7 cut(s) 36, 572, 983, 1184, 1314, 1954, 3726
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 3849, 3881
PstI CTGCAG 3 cut(s) 16, 1065, 3193
PstNI CAGNNNCTG 2 cut(s) 1979, 2410
PsuI RGATCY 2 cut(s) 86, 876
PvuII CAGCTG 2 cut(s) 1784, 2927
RseI CAYNNNNRTG 5 cut(s) 51, 1443, 1606, 2160, 3241
SacII CCGCGG 1 cut(s) 3787
SatI GCNGC 8 cut(s) 12, 132, 428, 775, 1064, 1785, 2925, 2928
Sau3AI GATC 9 cut(s) 69, 86, 202, 876, 1297, 1423, 3281, 3423, 3844
Sau96I GGNCC 7 cut(s) 36, 572, 983, 1184, 1314, 1954, 3726
ScaI AGTACT 3 cut(s) 1310, 1640, 2757
SchI GAGTC 3 cut(s) 553, 1066, 1284
ScrFI CCNGG 5 cut(s) 254, 779, 1265, 2698, 2808
SduI GDGCHC 2 cut(s) 253, 2358
SexAI ACCWGGT 1 cut(s) 2806
SfaNI GCATC 9 cut(s) 65, 546, 907, 1807, 1921, 1955, 2082, 2905, 3831
SfcI CTRYAG 6 cut(s) 12, 1061, 1333, 2202, 2441, 3189
Sfr303I CCGCGG 1 cut(s) 3787
SgrBI CCGCGG 1 cut(s) 3787
SinI GGWCC 6 cut(s) 36, 572, 1184, 1314, 1954, 3726
SmiMI CAYNNNNRTG 5 cut(s) 51, 1443, 1606, 2160, 3241
SmlI CTYRAG 3 cut(s) 284, 498, 635
SmoI CTYRAG 3 cut(s) 284, 498, 635
SpeI ACTAGT 1 cut(s) 3883
SphI GCATGC 2 cut(s) 56, 1500
SseBI AGGCCT 1 cut(s) 1023
SsiI CCGC 4 cut(s) 428, 942, 3784, 3786
SspI AATATT 2 cut(s) 2886, 3288
StuI AGGCCT 1 cut(s) 1023
StyD4I CCNGG 5 cut(s) 252, 777, 1263, 2696, 2806
StyI CCWWGG 6 cut(s) 880, 1180, 1950, 2075, 2227, 2302
TaaI ACNGT 9 cut(s) 367, 745, 1862, 1981, 2671, 3068, 3323, 3753, 3865
TaiI ACGT 4 cut(s) 173, 262, 1606, 2906
TaqI TCGA 6 cut(s) 1422, 1620, 2437, 2825, 3024, 3467
TatI WGTACW 7 cut(s) 1308, 1638, 2755, 2963, 3390, 3542, 3778
TauI GCSGC 1 cut(s) 430
TscAI CASTG 9 cut(s) 131, 538, 762, 1351, 1476, 2248, 2532, 3503, 3552
TseFI GTSAC 8 cut(s) 171, 1190, 2197, 2243, 2645, 3175, 3343, 3501
TseI GCWGC 7 cut(s) 11, 131, 774, 1063, 1784, 2924, 2927
Tsp45I GTSAC 8 cut(s) 171, 1190, 2197, 2243, 2645, 3175, 3343, 3501
TspGWI ACGGA 3 cut(s) 1217, 3426, 3771
TspRI CASTG 9 cut(s) 131, 538, 762, 1351, 1476, 2248, 2532, 3503, 3552
Van91I CCANNNNNTGG 2 cut(s) 584, 3488
VpaK11BI GGWCC 6 cut(s) 36, 572, 1184, 1314, 1954, 3726
VspI ATTAAT 1 cut(s) 2129
XagI CCTNNNNNAGG 1 cut(s) 1265
XapI RAATTY 3 cut(s) 385, 516, 2063
XbaI TCTAGA 2 cut(s) 1505, 1715
XceI RCATGY 4 cut(s) 56, 1448, 1500, 2316
XmiI GTMKAC 2 cut(s) 1176, 3366
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1515, 1963, 2757
ZrmI AGTACT 3 cut(s) 1310, 1640, 2757
Zsp2I ATGCAT 4 cut(s) 58, 1822, 2318, 3308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.