RLG00000007258
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000472
Physical Location & Seq
Reverse (-)
15053107 .. 15059866
6760 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007258

Sequence Viewer

Length: 4356 bp
ATGATAGTTGGTTTAACAGCAGGAGTGCTTGGAGGCACAGACCATAATTCCATTCTAATGGAGCTAACGCAAGTTAAGAGAGACGTTCACTCATCGTTTCGACACCAAGCTTCGAGCTACTCGATCAAAGAGGAGGATGAGGAAACTCAGCTGCAGTGGGCTGCCATTGAGAGATTGCCTACATTCAGAAGGCTGAGGACCTCACTTTTCGACCTCGGTGATAGCGAAAAGGGAAAAACCAGTGGCAATGAGTGTGCAGGGAAGAAGGTGGTTGATGTTACCAAGTTGGGAGCAGATGAGAAGCATCTTTTCATTGAGAAGATCATAAAGCACATTGAGCATGATAATCTGAGGCTGCTACAAAAAATGAGAGAAAGGATAGACAGGGTGAATGTGAAATTGCCGACTGTGGAGGTGAGGTACAAGAGTTTGTGTGTGGAAGCCGAGTGTGAAGTAGTACAAGGAAAGCCGCTTCCGACGCTGTGGAACTCTCTGCTAAGCTTGTTATCAGTTTTTGGAAAGGTAATGTGGTGCAAGTCTCAAGATGCAAAGATTAGCATTCTCACAGATGTCAGTGGCGTCATCAAACCTTCAAGGCTTACTCTCCTTCTTGGTCCCCCGGGGTGTGGTAAAACCACCTTCTTATTGGCACTTGCCGGAAAACTGGATAAATCCCTGAAGGCTGCAGGGGAGATTTCATACAATGGTTACAAGCTAGATGAGTTTGTTCCTCAAAAAACTTCAGCGTACATAAGCCAACACGACCTTCACGTACCTGAGATGACTGTAAGAGAAACAATCGAGTTTTCAGCCCGCTGTCAAGGTGTTGGAAGCAGAGCTGATATAATGCTAGAGGTTACCAGGAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCAATCTCAGTTGAAGAACAAAAGAAAAACCTCCAAACTGACTATGTTTTGAAGATGCTAGGACTAGATATCTGCAGTGACACAATGGTTGGTGATGCATTACAAAGAGGTATTTCGGGCGGCCAAAAGAAAAGGCTGACAACAGGAGAGATGATTGTCGGTCCCACAAAAGCGCTATTTATGGATGAAATATCAACTGGATTAGACAGCTCTACGACTTTTCAGATAGTCACATATCTACAGCAGTTGGTGCACATAACAGATACAACTGCATTGGTGTCACTTCTACAACCAGCACCCGAGACATTCGATTTATTTGATGATGTGATACTAATGGCAGAGGGGAAAATAGTTTACCATGGTCCTCGGAGTCATGCACTTCAGTTTTTCGAAGATTGTGGTTTTAAGTGCCCACCAAGAAAGGGTGCTGCAGATTATCTTCAGGAGGTAATCTCAAAGAAGGATCAAGCACAATACTGGAAGCATGATAACATTCCCTATGATTATGTTTCTGTGGACAAATTCTCTCAGCTTTTCAGAGCAAGTTACTTGGGAAAGAAGTTAACTGATGAGCTCTCAAAACCATATGAGAAATCACGGGGCCAGGATAAGGCTTTATCATTTAGCATCTACTCTGTCAGAAAATGGGAATTGTTCAAAGCTTGCATGGGTAGAGAGCTGCTTCTTATGAAACGAAATTCCTTTGTTTATGTATTCAAAACAGCGCAGCTTTTCATCACTGCACTTTTGACAACGACAGTATTCATACGTACTCAGATGGATGTGGATTCGACAAGTGCAAATTATTTTATGGGTGCATTGTTCTATACACTTGTGAGACTTATGACCAATGGTGTTGCAGAACTGTCCTTGACTATCACTAGACTACCAGTGGTTGATAAGCAAAGAGCCTTCTATCTTTATCCAGCATGGTCCTATTCAATTCCAGCATCTCTCCTGAAGATTCCATTTTCACTGAGTGATGCGGTGTTGTGGACAGCAATAACTTACTATGGTGTTGGGTATAGCCCTGAAATAAGAAGGTTCTTCTGCCAGCTCCTTGTGCTGTTTGCTCTGCATCTTGCATCAACATCCATGTGTCGTTTGATTGCAGTAATTTTCCGATCCATGGTTGTTGCAACAACTATTGGTACTTTAATCTTGGTACTAATGTTTGTATTTGGAGGCTTCATTTTGCCACCACCCTCATTACCTGTTTGGTTGAAGTGGGGATTCTGGTGTTCTCCTATGACTTATGGGGAAATAGCTGCAAGTCTGAATGAATTCCGTGCTCCTCGATGGCAAAAGGTTTCAAAGGGAAACACAACCTTGGGGAATGAAATTCTAACCAGTCATGGTTTGAACTTTGATAGCTACTTCTACTGGATATCAGTAGGGGCTTTATTCGGGTTCACAGCTATTTTCGATCTTGGATTTGTTTTAGCCTTAACTTACTTAAAATCTCCAAAGATGTCTCGTGCTATTATTTCAAAAAAAAGATTATCTCAACTCAAAGGACAAGATTCTTGGAACAAGACCGGTGCAAAGTCAGATACTGTATCAACTCCAGCTGATTTTTCCCAAACCATGGAAGAAACAGGGAAGATGGTTCTGCCATTTGAGCCGCTAACAATCTCATTTAAGGATGTGCAGTACAGTGTTGACCTCCCGCCGGAAATGAAAAGGCACAGTTTCGATCAGAAAAAACTTGAGCTGCTTAAAGATATTACAGGAGCATTTAGGCCTGGAGTTCTTACAGCATTGATGGGAGTCAGTGGGGCTGGGAAAACTACTCTGATGGATGTTCTTTCGGGAAGGAAAACCGGAGGCACTATTGAAGGAGATATAAGAATAGGAGGCTATCCCAAAGTCCAGAAGACATTCGCTAGAATATCGGGTTACTGTGAACAATTTGATATACATTCTCCACACATCACTGTAGGAGAGTCGGTTATGTTTTCAGCTTGGTTGAGGTTGCCACCCGAAATTGGTCAAGACACAAAAGCTAAATTTGTAGAAGAAGTTATTGAAACAATTGAATTGGAGGATATAAGAGATTCTTTAGTTGGCATTCCTGGCCTAAGTGGCCTATCAACCGAACAGCGCAAAAGGCTAACAATTGCAGTTGAGCTTGTTTCCAATCCGTCAATAATATTTATGGATGAACCTACATCAGGACTAGATGCCAGAGCAGCGGCAATTGTCATGCGTGCTGTGAAGAATGTAGTTGCCACAGGAAGAACAACTATTTGCACAATCCACCAACCTAGCATTGAAATCTTTGAGGCTTTTGATGAGTTAATTCTGATGAAAACGGGAGGGCAAATTATCTATTCTGGAAGTCTGGGCCATCATTCGAGTAATCTCATTGAATATTTTGAGGGTATTCCTGGTATACCAAAGATCAAAGATAACTATAACCCCGCAACATGGATGTTAGAAGTCACTTCCTCTTCAGTAGAAGCAGATCTCGGTGTAGATTTTGCAAACATTTATAAAGAATCTACTCTGTATAAAGACACAGTTGAATTGGTGAGACAGATAAGTGAACCAAAGCCAGGTTCAAGAGCTTTGCAATTTTCCACCCAATTTCCGCAAAATAGCTGGGTGCAGTTTAGGGCATGCTTATGGAAACAACACTTATCCTACTGGAGAAGTCCTGAATACAATCTAGCACGTTTCATGTTCATGACTGTTGCCTCAGTGTTGTTTGGTGCAATCTTCTGGCAAAAGGGGAAGGAAATAAATAATGAGCAGGATTTGCTGACTATACTTGGGTCCATGTACATTGCTGTAATATTCCTGGGAATAAACAATTGTTCAACAGTTCTTCCTTATGTGGCAACTGAGCGCACCGTTTTGTACCGCGAAAGATTTGCTGGGATGTACTCATCAAAGGCTTATTCCTTTGCACAGGTGGCCATGGAAATACCTTATACAATGTTGCAAGCAATTTTATATGTGGTCATTACATATCCTACGATAGGCTACTATTGGAATGCTTCCAAGGTTTTTTGGTACTTCTATGCAACCTTCTGTACATTTCTATACTTTGTATACCTTGGGATGTTGTTAGTTTCTTTGAGCTCAGACATGGAAGTAGCTTCGATATTGGCCACTGCAATCTACACCATATTGAATCTTTTCTCCGGCTTCCTCATGCCTGGACCGAAAATTCCGAAGTGGTGGATTTGGTGTTACTGGATCTGTCCTACATCATGGTCACTAAATGGCCTCCTGACTTCACAATATGGAGACATGGACAAAGAGATATTGATTTTTGGAGAGCATAAAACAGTTGCTTCCTTCCTGCAAGATTATTATGGTTTTCATTATGATCTTTTACCCCTTGTGGCTATTGCTCTGATTACCTTCCCAATTGCTTTTGCTTTTCTCTTTGCATATTTTATAGGGAGATTAAATTTCCAAAGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1452

Amino Acids

163.42

Weight (kDa)

8.12

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 188 - 369 1.3e-16 ABC transporter
ABC2_membrane PF01061 524 - 735 2.6e-45 ABC-2 type transporter
PDR_assoc PF08370 740 - 802 1.2e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 879 - 1031 3e-20 ABC transporter
ABC2_membrane PF01061 1177 - 1390 1.8e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 1227 - 1435 9.4e-07 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3414
AccB7I CCANNNNNTGG 1 cut(s) 2506
AccI GTMKAC 2 cut(s) 3313, 3975
AccII CGCG 1 cut(s) 3786
AclWI GGATC 4 cut(s) 887, 1389, 2037, 4130
AcoI YGGCCR 3 cut(s) 1039, 3837, 4032
AcsI RAATTY 7 cut(s) 1439, 1615, 2201, 2259, 2927, 4092, 4339
AcuI CTGAAG 6 cut(s) 698, 726, 1283, 1343, 1898, 3357
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 1898
AfeI AGCGCT 1 cut(s) 1092
AgeI ACCGGT 1 cut(s) 2456
AjnI CCWGG 8 cut(s) 860, 1521, 2662, 2992, 3307, 3475, 3720, 4081
AjuI GAANNNNNNNTTGG 4 cut(s) 750, 782, 3463, 3495
Alw21I GWGCWC 4 cut(s) 1173, 1494, 2212, 4007
Alw26I GTCTC 7 cut(s) 75, 543, 1214, 1750, 2397, 3448, 4167
Alw44I GTGCAC 1 cut(s) 1169
AlwI GGATC 4 cut(s) 887, 1389, 2037, 4130
AlwNI CAGNNNCTG 1 cut(s) 2474
Ama87I CYCGRG 2 cut(s) 619, 1217
Aor51HI AGCGCT 1 cut(s) 1092
AoxI GGCC 9 cut(s) 1039, 1519, 2660, 2995, 3004, 3265, 3837, 4032, 4150
ApaLI GTGCAC 1 cut(s) 1169
ApoI RAATTY 7 cut(s) 1439, 1615, 2201, 2259, 2927, 4092, 4339
AsiGI ACCGGT 1 cut(s) 2456
Asp700I GAANNNNTTC 3 cut(s) 2201, 2798, 4061
AspLEI GCGC 4 cut(s) 1093, 1645, 3024, 3771
AspS9I GGNCC 9 cut(s) 198, 614, 1079, 1280, 1519, 1851, 3265, 3696, 4085
AsuC2I CCSGG 2 cut(s) 620, 621
AsuHPI GGTGA 5 cut(s) 230, 400, 427, 1022, 3463
AsuII TTCGAA 1 cut(s) 1308
AvaI CYCGRG 2 cut(s) 619, 1217
AvaII GGWCC 7 cut(s) 198, 614, 1079, 1280, 1851, 3696, 4085
BaeGI GKGCMC 2 cut(s) 1173, 1331
BaeI ACNNNNGTAYC 4 cut(s) 412, 445, 2075, 2108
BalI TGGCCA 2 cut(s) 3839, 4034
BanII GRGCYC 2 cut(s) 1494, 4007
BauI CACGAG 1 cut(s) 2394
BbsI GAAGAC 1 cut(s) 2801
Bbv12I GWGCWC 4 cut(s) 1173, 1494, 2212, 4007
BbvCI CCTCAGC 1 cut(s) 194
BccI CCATC 6 cut(s) 1690, 2211, 2518, 2677, 2710, 3276
BcgI CGANNNNNNTGC 2 cut(s) 3776, 3810
BciT130I CCWGG 8 cut(s) 862, 1523, 2664, 2994, 3309, 3477, 3722, 4083
BcnI CCSGG 2 cut(s) 620, 621
BcoDI GTCTC 7 cut(s) 75, 543, 1214, 1750, 2397, 3448, 4167
BfaI CTAG 9 cut(s) 716, 851, 977, 983, 1800, 2805, 3098, 3186, 3590
BfmI CTRYAG 6 cut(s) 152, 684, 991, 1157, 1347, 2856
BfoI RGCGCY 1 cut(s) 1094
BglI GCCNNNNNGGC 1 cut(s) 3003
BglII AGATCT 1 cut(s) 3385
BlpI GCTNAGC 1 cut(s) 497
Bme18I GGWCC 7 cut(s) 198, 614, 1079, 1280, 1851, 3696, 4085
BmeT110I CYCGRG 2 cut(s) 619, 1217
BmgT120I GGNCC 9 cut(s) 198, 614, 1079, 1280, 1519, 1851, 3265, 3696, 4085
BmiI GGNNCC 4 cut(s) 616, 1081, 1520, 3697
BpiI GAAGAC 1 cut(s) 2801
BplI GAGNNNNNCTC 2 cut(s) 1355, 1387
BpmI CTGGAG 3 cut(s) 2469, 2685, 3589
Bpu10I CCTNAGC 1 cut(s) 194
Bpu1102I GCTNAGC 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 1308
BpuEI CTTGAG 2 cut(s) 525, 2648
BpuMI CCSGG 2 cut(s) 620, 621
BsaAI YACGTR 2 cut(s) 772, 1688
BsaHI GRCGYC 1 cut(s) 579
BsaWI WCCGGW 2 cut(s) 2456, 2741
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 2853, 2883
Bse118I RCCGGY 1 cut(s) 2456
Bse1I ACTGG 9 cut(s) 240, 669, 1120, 1400, 1808, 2268, 2306, 3572, 4124
Bse3DI GCAATG 2 cut(s) 253, 3705
BseBI CCWGG 8 cut(s) 862, 1523, 2664, 2994, 3309, 3477, 3722, 4083
BseMI GCAATG 2 cut(s) 253, 3705
BseNI ACTGG 9 cut(s) 240, 669, 1120, 1400, 1808, 2268, 2306, 3572, 4124
BseRI GAGGAG 2 cut(s) 146, 2202
BseSI GKGCMC 2 cut(s) 1173, 1331
BseYI CCCAGC 3 cut(s) 2699, 3522, 3797
BsgI GTGCAG 4 cut(s) 276, 1644, 2588, 3548
Bsh1236I CGCG 1 cut(s) 3786
BshFI GGCC 9 cut(s) 1041, 1521, 2662, 2997, 3006, 3267, 3839, 4034, 4152
BshTI ACCGGT 1 cut(s) 2456
BsiHKAI GWGCWC 4 cut(s) 1173, 1494, 2212, 4007
BsiHKCI CYCGRG 2 cut(s) 619, 1217
BsiSI CCGG 6 cut(s) 620, 657, 2457, 2591, 2742, 4068
BslFI GGGAC 2 cut(s) 600, 1065
BsmAI GTCTC 7 cut(s) 75, 543, 1214, 1750, 2397, 3448, 4167
BsmBI CGTCTC 1 cut(s) 75
BsmFI GGGAC 2 cut(s) 600, 1065
BsmI GAATGC 3 cut(s) 558, 2988, 3922
BsnI GGCC 9 cut(s) 1041, 1521, 2662, 2997, 3006, 3267, 3839, 4034, 4152
BsoBI CYCGRG 2 cut(s) 619, 1217
Bsp119I TTCGAA 1 cut(s) 1308
Bsp1286I GDGCHC 5 cut(s) 1173, 1331, 1494, 2212, 4007
Bsp1407I TGTACA 2 cut(s) 3702, 3956
Bsp1720I GCTNAGC 1 cut(s) 497
Bsp19I CCATGG 4 cut(s) 1276, 2046, 2505, 3840
BspANI GGCC 9 cut(s) 1041, 1521, 2662, 2997, 3006, 3267, 3839, 4034, 4152
BspFNI CGCG 1 cut(s) 3786
BspHI TCATGA 1 cut(s) 3606
BspLI GGNNCC 4 cut(s) 616, 1081, 1520, 3697
BspMAI CTGCAG 4 cut(s) 156, 688, 995, 1351
BspPI GGATC 4 cut(s) 887, 1389, 2037, 4130
BspT104I TTCGAA 1 cut(s) 1308
BsrDI GCAATG 2 cut(s) 253, 3705
BsrFI RCCGGY 1 cut(s) 2456
BsrGI TGTACA 2 cut(s) 3702, 3956
BsrI ACTGG 9 cut(s) 240, 669, 1120, 1400, 1808, 2268, 2306, 3572, 4124
BssAI RCCGGY 1 cut(s) 2456
BssNAI GTATAC 2 cut(s) 3314, 3976
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 1 cut(s) 2394
BssT1I CCWWGG 7 cut(s) 1276, 2046, 2247, 2505, 3840, 3924, 3979
Bst1107I GTATAC 2 cut(s) 3314, 3976
Bst2BI CACGAG 1 cut(s) 2394
Bst2UI CCWGG 8 cut(s) 862, 1523, 2664, 2994, 3309, 3477, 3722, 4083
Bst6I CTCTTC 1 cut(s) 3376
BstACI GRCGYC 1 cut(s) 579
BstAPI GCANNNNNTGC 2 cut(s) 1168, 3679
BstAUI TGTACA 2 cut(s) 3702, 3956
BstBAI YACGTR 2 cut(s) 772, 1688
BstBI TTCGAA 1 cut(s) 1308
BstC8I GCNNGC 6 cut(s) 814, 1582, 1973, 3129, 3541, 3867
BstDSI CCRYGG 4 cut(s) 1276, 2046, 2505, 3840
BstEII GGTNACC 1 cut(s) 856
BstENI CCTNNNNNAGG 2 cut(s) 3090, 3900
BstFNI CGCG 1 cut(s) 3786
BstH2I RGCGCY 1 cut(s) 1094
BstHHI GCGC 4 cut(s) 1093, 1645, 3024, 3771
BstMAI GTCTC 7 cut(s) 75, 543, 1214, 1750, 2397, 3448, 4167
BstNI CCWGG 8 cut(s) 862, 1523, 2664, 2994, 3309, 3477, 3722, 4083
BstNSI RCATGY 1 cut(s) 3543
BstPI GGTNACC 1 cut(s) 856
BstSFI CTRYAG 6 cut(s) 152, 684, 991, 1157, 1347, 2856
BstSLI GKGCMC 2 cut(s) 1173, 1331
BstSNI TACGTA 1 cut(s) 1688
BstUI CGCG 1 cut(s) 3786
BstV2I GAAGAC 1 cut(s) 2801
BstX2I RGATCY 2 cut(s) 3385, 4122
BstXI CCANNNNNNTGG 1 cut(s) 58
BstYI RGATCY 2 cut(s) 3385, 4122
BstZ17I GTATAC 2 cut(s) 3314, 3976
BsuRI GGCC 9 cut(s) 1041, 1521, 2662, 2997, 3006, 3267, 3839, 4034, 4152
BtgI CCRYGG 4 cut(s) 1276, 2046, 2505, 3840
BtsI GCAGTG 4 cut(s) 161, 1000, 1656, 4035
Cac8I GCNNGC 6 cut(s) 814, 1582, 1973, 3129, 3541, 3867
CaiI CAGNNNCTG 1 cut(s) 2474
CciI TCATGA 1 cut(s) 3606
CfoI GCGC 4 cut(s) 1093, 1645, 3024, 3771
Cfr10I RCCGGY 1 cut(s) 2456
Cfr13I GGNCC 9 cut(s) 198, 614, 1079, 1280, 1519, 1851, 3265, 3696, 4085
Cfr9I CCCGGG 1 cut(s) 619
CseI GACGC 2 cut(s) 487, 568
CspAI ACCGGT 1 cut(s) 2456
DraIII CACNNNGTG 1 cut(s) 1898
EaeI YGGCCR 3 cut(s) 1039, 3837, 4032
Eam1104I CTCTTC 1 cut(s) 3376
EarI CTCTTC 1 cut(s) 3376
Ecl136II GAGCTC 2 cut(s) 1492, 4005
Eco105I TACGTA 1 cut(s) 1688
Eco130I CCWWGG 7 cut(s) 1276, 2046, 2247, 2505, 3840, 3924, 3979
Eco147I AGGCCT 1 cut(s) 2662
Eco24I GRGCYC 2 cut(s) 1494, 4007
Eco32I GATATC 2 cut(s) 988, 2307
Eco47I GGWCC 7 cut(s) 198, 614, 1079, 1280, 1851, 3696, 4085
Eco47III AGCGCT 1 cut(s) 1092
Eco53kI GAGCTC 2 cut(s) 1492, 4005
Eco57I CTGAAG 6 cut(s) 698, 726, 1283, 1343, 1898, 3357
Eco88I CYCGRG 2 cut(s) 619, 1217
Eco91I GGTNACC 1 cut(s) 856
EcoICRI GAGCTC 2 cut(s) 1492, 4005
EcoNI CCTNNNNNAGG 2 cut(s) 3090, 3900
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 856
EcoRI GAATTC 1 cut(s) 2201
EcoRII CCWGG 8 cut(s) 860, 1521, 2662, 2992, 3307, 3475, 3720, 4081
EcoRV GATATC 2 cut(s) 988, 2307
EcoT14I CCWWGG 7 cut(s) 1276, 2046, 2247, 2505, 3840, 3924, 3979
EcoT22I ATGCAT 1 cut(s) 1018
EcoT38I GRGCYC 2 cut(s) 1494, 4007
ErhI CCWWGG 7 cut(s) 1276, 2046, 2247, 2505, 3840, 3924, 3979
Esp3I CGTCTC 1 cut(s) 75
FalI AAGNNNNNCTT 2 cut(s) 2962, 2994
FaqI GGGAC 2 cut(s) 600, 1065
FauI CCCGC 3 cut(s) 821, 2595, 3349
FauNDI CATATG 1 cut(s) 1504
FblI GTMKAC 2 cut(s) 3313, 3975
FriOI GRGCYC 2 cut(s) 1494, 4007
FspBI CTAG 9 cut(s) 716, 851, 977, 983, 1800, 2805, 3098, 3186, 3590
GlaI GCGC 4 cut(s) 1092, 1644, 3023, 3770
GsaI CCCAGC 3 cut(s) 2703, 3526, 3801
GsuI CTGGAG 3 cut(s) 2469, 2685, 3589
HaeII RGCGCY 1 cut(s) 1094
HaeIII GGCC 9 cut(s) 1041, 1521, 2662, 2997, 3006, 3267, 3839, 4034, 4152
HapII CCGG 6 cut(s) 620, 657, 2457, 2591, 2742, 4068
HgaI GACGC 2 cut(s) 487, 568
HhaI GCGC 4 cut(s) 1093, 1645, 3024, 3771
Hin1I GRCGYC 1 cut(s) 579
Hin6I GCGC 4 cut(s) 1091, 1643, 3022, 3769
HinP1I GCGC 4 cut(s) 1091, 1643, 3022, 3769
HincII GTYRAC 2 cut(s) 1482, 2581
HindII GTYRAC 2 cut(s) 1482, 2581
HindIII AAGCTT 3 cut(s) 108, 499, 1578
HpaI GTTAAC 1 cut(s) 1482
HpaII CCGG 6 cut(s) 620, 657, 2457, 2591, 2742, 4068
HphI GGTGA 5 cut(s) 230, 400, 427, 1022, 3463
Hpy99I CGWCG 1 cut(s) 481
HpyCH4IV ACGT 4 cut(s) 84, 771, 1687, 3595
HpySE526I ACGT 4 cut(s) 84, 771, 1687, 3595
Hsp92I GRCGYC 1 cut(s) 579
HspAI GCGC 4 cut(s) 1091, 1643, 3022, 3769
KspAI GTTAAC 1 cut(s) 1482
LmnI GCTCC 5 cut(s) 61, 290, 1980, 2215, 2651
MaeI CTAG 9 cut(s) 716, 851, 977, 983, 1800, 2805, 3098, 3186, 3590
MaeII ACGT 4 cut(s) 84, 771, 1687, 3595
MfeI CAATTG 5 cut(s) 2952, 3036, 3117, 3733, 4296
MflI RGATCY 2 cut(s) 3385, 4122
MhlI GDGCHC 5 cut(s) 1173, 1331, 1494, 2212, 4007
MlsI TGGCCA 2 cut(s) 3839, 4034
MluNI TGGCCA 2 cut(s) 3839, 4034
MlyI GAGTC 3 cut(s) 1297, 2697, 2873
MmeI TCCRAC 2 cut(s) 500, 808
Mox20I TGGCCA 2 cut(s) 3839, 4034
Mph1103I ATGCAT 1 cut(s) 1018
MroXI GAANNNNTTC 3 cut(s) 2201, 2798, 4061
MscI TGGCCA 2 cut(s) 3839, 4034
MslI CAYNNNNRTG 5 cut(s) 56, 911, 2014, 3544, 3605
Msp20I TGGCCA 2 cut(s) 3839, 4034
MspA1I CMGCKG 4 cut(s) 151, 816, 2489, 3113
MspI CCGG 6 cut(s) 620, 657, 2457, 2591, 2742, 4068
MunI CAATTG 5 cut(s) 2952, 3036, 3117, 3733, 4296
Mva1269I GAATGC 3 cut(s) 558, 2988, 3922
MvaI CCWGG 8 cut(s) 862, 1523, 2664, 2994, 3309, 3477, 3722, 4083
MvnI CGCG 1 cut(s) 3786
NciI CCSGG 2 cut(s) 620, 621
NcoI CCATGG 4 cut(s) 1276, 2046, 2505, 3840
NdeI CATATG 1 cut(s) 1504
NlaIV GGNNCC 4 cut(s) 616, 1081, 1520, 3697
NmeAIII GCCGAG 1 cut(s) 469
NmuCI GTSAC 5 cut(s) 995, 1147, 1197, 3361, 4140
NsiI ATGCAT 1 cut(s) 1018
NspI RCATGY 1 cut(s) 3543
NspV TTCGAA 1 cut(s) 1308
PaeI GCATGC 1 cut(s) 3543
PagI TCATGA 1 cut(s) 3606
PceI AGGCCT 1 cut(s) 2662
PcsI WCGNNNNNNNCGW 3 cut(s) 119, 222, 768
PctI GAATGC 3 cut(s) 558, 2988, 3922
PdmI GAANNNNTTC 3 cut(s) 2201, 2798, 4061
PfeI GAWTC 7 cut(s) 1706, 1882, 2151, 2441, 2975, 3419, 4057
PflMI CCANNNNNTGG 1 cut(s) 2506
PinAI ACCGGT 1 cut(s) 2456
PleI GAGTC 3 cut(s) 1296, 2696, 2872
PpsI GAGTC 3 cut(s) 1296, 2696, 2872
Ppu21I YACGTR 2 cut(s) 772, 1688
PpuMI RGGWCCY 1 cut(s) 198
PsiI TTATAA 1 cut(s) 3414
Psp124BI GAGCTC 2 cut(s) 1494, 4007
Psp5II RGGWCCY 1 cut(s) 198
Psp6I CCWGG 8 cut(s) 860, 1521, 2662, 2992, 3307, 3475, 3720, 4081
PspEI GGTNACC 1 cut(s) 856
PspFI CCCAGC 3 cut(s) 2699, 3522, 3797
PspGI CCWGG 8 cut(s) 860, 1521, 2662, 2992, 3307, 3475, 3720, 4081
PspN4I GGNNCC 4 cut(s) 616, 1081, 1520, 3697
PspPI GGNCC 9 cut(s) 198, 614, 1079, 1280, 1519, 1851, 3265, 3696, 4085
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 4 cut(s) 156, 688, 995, 1351
PstNI CAGNNNCTG 1 cut(s) 2474
PsuI RGATCY 2 cut(s) 3385, 4122
PvuII CAGCTG 2 cut(s) 151, 2489
RseI CAYNNNNRTG 5 cut(s) 56, 911, 2014, 3544, 3605
SacI GAGCTC 2 cut(s) 1494, 4007
Sau96I GGNCC 9 cut(s) 198, 614, 1079, 1280, 1519, 1851, 3265, 3696, 4085
SchI GAGTC 3 cut(s) 1297, 2697, 2873
SduI GDGCHC 5 cut(s) 1173, 1331, 1494, 2212, 4007
SfcI CTRYAG 6 cut(s) 152, 684, 991, 1157, 1347, 2856
SfiI GGCCNNNNNGGCC 1 cut(s) 3003
SfuI TTCGAA 1 cut(s) 1308
SinI GGWCC 7 cut(s) 198, 614, 1079, 1280, 1851, 3696, 4085
SmaI CCCGGG 1 cut(s) 621
SmiMI CAYNNNNRTG 5 cut(s) 56, 911, 2014, 3544, 3605
SmlI CTYRAG 2 cut(s) 540, 2627
SmoI CTYRAG 2 cut(s) 540, 2627
SnaBI TACGTA 1 cut(s) 1688
SphI GCATGC 1 cut(s) 3543
SseBI AGGCCT 1 cut(s) 2662
SspI AATATT 3 cut(s) 3072, 3293, 3717
SspMI CTAG 9 cut(s) 716, 851, 977, 983, 1800, 2805, 3098, 3186, 3590
SstI GAGCTC 2 cut(s) 1494, 4007
StuI AGGCCT 1 cut(s) 2662
StyI CCWWGG 7 cut(s) 1276, 2046, 2247, 2505, 3840, 3924, 3979
TaiI ACGT 4 cut(s) 87, 774, 1690, 3598
TaqII GACCGA 2 cut(s) 1067, 4102
TatI WGTACW 5 cut(s) 457, 2571, 3702, 3804, 3956
TauI GCSGC 4 cut(s) 472, 1041, 2545, 3116
TfiI GAWTC 7 cut(s) 1706, 1882, 2151, 2441, 2975, 3419, 4057
TseFI GTSAC 5 cut(s) 995, 1147, 1197, 3361, 4140
Tsp45I GTSAC 5 cut(s) 995, 1147, 1197, 3361, 4140
TspGWI ACGGA 2 cut(s) 2195, 3051
TspMI CCCGGG 1 cut(s) 619
Van91I CCANNNNNTGG 1 cut(s) 2506
VneI GTGCAC 1 cut(s) 1169
VpaK11BI GGWCC 7 cut(s) 198, 614, 1079, 1280, 1851, 3696, 4085
XagI CCTNNNNNAGG 2 cut(s) 3090, 3900
XapI RAATTY 7 cut(s) 1439, 1615, 2201, 2259, 2927, 4092, 4339
XceI RCATGY 1 cut(s) 3543
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XmaI CCCGGG 1 cut(s) 619
XmiI GTMKAC 2 cut(s) 3313, 3975
XmnI GAANNNNTTC 3 cut(s) 2201, 2798, 4061
XspI CTAG 9 cut(s) 716, 851, 977, 983, 1800, 2805, 3098, 3186, 3590
Zsp2I ATGCAT 1 cut(s) 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.