Rorug02G0539700

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000472
Physical Location & Seq
Forward (+)
66956363 .. 66960998
4636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0539700.1

Sequence Viewer

Length: 2964 bp
ATGAGCCAAAGAACTGGGAATTCTGAACCCAATTTTTTGTCTTTAACCACTAAGTTTTGTGATGGAAATATGAACACTAAGTGGGTAGAAAAGTTATCTCAGAACAGTGCTAGTGTAGCCTCTCCATCTGTGTCATATGGGTATTGGAATTCTGAACCCAATCCTTTATCTTTAAGCACTGGTTTTTGTGATGGAGATTTTGCTGAGAGAAGCAAGAAGTGGGTGGGAAAGTCATCTAAGAGCAGTGCTAGTGTAGCCTCTCCACCTGCATCACATGAGCATCGGAATTCTGAACCCGATCCTCTGTCTTTGAGCTCCGGCGTACCTGATGGAAGTATTGCTGAGAAAAAGAAGAAGGTGATGATGATGAAGAAGAAGAGGGTTGGAAAGTCATCTCAGAGCAGTGGTGGTGTTGTAGCCTCTCCATCTGTATCACATGGGAATGAGGTTTCCGAAGATTCAACGGTCCACATTTCCAAGAAACTTTCGTCTCCTGATCGTACCCAGAACAGCTTATCAGTTGGAATGCAGAGTTCTGATGACTGTTCAAAGATAAGCAAACAAGGGTCTGATGAATTAAGCAGTACTAGTGTTGTTGAGGATGTTGTAGTTCAGTGTAACAAACAGGTTGAACTTGAAGATTCCAAGAATCGAAGCCACACAGGTTGCACTTACAATGGAAAAGAAAATAGGCATTTTGGTTGGAACAGGAGGCAGTACAATGCCAGGGAAGGACATGTGAATTGGGGGAAGAAACCAAGTTACAGAAATGGTGTGAAAGATGTTAACCCGGCAGAGAATCGTTTTGCGGCTGAGCGTAGCTCATTAGCTAATGATGGTATCTTACCTTCTCCATTGATTTCATCTGGATACAACAATGGAAAAGAAAATAGGCATAATGGTTGGAACAGGAAGCAGTACAATGCTAGGGAAGGACATGTGAATTGGGGGAAGAAACCAAGTTACAGAAATGGTGTGAAAGATGTCAACCTGGCAGAGAATCGCTTTTGGTCTGAGCGGAATTCATTAGCCAATGATGCCATCTCACCTACTCCATCGAATTCCTCTGGACACAAAAATGCTGCTTATAGATATAGAAAAAGGGATGCCCCTCCAAGACTATTGAATGAGTCATCACAGGGGGCTGCTTCTCCACAGAGGTTGAATGGGACACTTTTTGTTTCAGTAAAAAGTCAAACGGAAGGCTTGGAAAGTGACTCTGAAAAATTAGTAGGAAGATCACCTAATTCAATTAAGCCTGTGAATTGCAATATGAAAAAAGGACCCCGCAATTATGAAGCAGTCTTCTCTGAGTTGCACAGTAAGTGTAAACAATTGTCAACGGGTTGTTTTGATATGCACGATTACAAGAGAGATGCTGCAGGAACAAATGGCAAGCAGATTGCAAGTCATGGTGATCGACACTATTTAACCTCACCTTCCATGTATTCTAAAATGTCTACTCAGGGAGTGATGAATGGTATTCAACAACACAAATTCAGGAAGATACCAAGCATGGAACATGAGTTTGGTAAGTTGGTACATGTATCCTTGGACGGTATACCATGCTTTCATACTGATCACAAACTTGAGAAAGATACTGCTGGAGCAGATATTATGGAGCGGACAGCTGTTGGTACAAAAGAGTTCAGGCCAGTGGACAGAATTTCATCTGCCAGTATCTCCAATGAGTTCAATCTCTTACCAGATTTAAGCAGGGAGTTAAATAATAGCCATCTGGCGGGAAACACAATATCCTGCAATCAACTGATTTCTTATGATGATCCAAAGGTTTATCAGTCTGCTGCTGAAATAGGTCAAAAAATAGAAAGAAAAGGTTATGATGCAAAGAATAGAGGACCAAAGGACCCTGACCAATTTCTAATTGGTTCAAATATGGGAATGAAAGCTCTAAATGCTGCTTACCAAATGCAATTAGCATCTGAAACTGTTCAGCTCGCAATGGGTTCTCCACTTGCAGAGTTTGAAACATTCATCCACTGCGCTGTTCCTGTTATTCCTTCTTCGTCTGTACATAAAGAATATTCTGTTTCCTTGGGTACTCAGCCATCTCACAGTTTACTATCCAAGCACCAGATACCAAATGTATCACTTCACAGTGTTTGGAACTGGTATGAGATACCAGGGAATTATGGGTTGGATGTCAAGGTAGTTTGTCCTAAAACCCTCACTGGCCTTCCAAATGATTCAATGTCATTCCAAGCCTATTTTGTTCCCTCCCTTTCTGCTATTCAATTGTTTGGACCACACATCCCTGGTTGCAAAAGATCATTTTCCAATTCTTCAGAAGCAGTACATCTCAACCATATTCGGGTTGGTTCATTTGATGTTGCCCTACATGATGGAAGTTGCGTTCAAAGTCTGGATTGTTCACCTGTCTTCTCCTCTGATGCTGAGCTCATATTTGAGTTTTTTGAGGTTGAGCTGCCACACCACCGGAGGCCTTTTTACAACAAAATTCTGGAGCTAATTGGTGCTGGAACTTCTAATCCTCAAGTATTTGGTGACCCATCAAAGCTCACTAGTCTGAATTTGCCTGATTTACATCCTGCATCTTGGTTTTCGGTGGCTTGGTATCCTATATATCAAATTCCAGAAGGGCACCTACGCGCATCATTCTTGACTTACCATTCACTTGGACATTTTGTTCAGAGACCTGGTTCAACTGTTGCTCCAGGTTGCATTTTCTTCCCTGTGTTAGGCTTGCAAAGCTACAATTCTCAGGATGAATGTTGGTTTGAACCCAAAATACCTTCTTCAGAAGAACCGACATCTTTTGACACCACAGGAATTCTCATAAAAAGGCTCAGGACGTTGGACGAAAATGCTTTACATTTCGCTAGAGGCTGGGTTTACAAGGATAAAGTCATGGTGCAGAACAGACATCCAGATTACGAGTTCTTCACTTCCCGAAAACACGTTACAAATAGTTATGTACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

987

Amino Acids

109.42

Weight (kDa)

8.79

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF789 PF05623 660 - 975 6.1e-57 Protein of unknown function (DUF789)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 2622
AccBSI CCGCTC 2 cut(s) 1018, 1624
AccI GTMKAC 2 cut(s) 1460, 1561
AccII CGCG 1 cut(s) 2631
AciI CCGC 5 cut(s) 809, 1018, 1288, 1624, 1742
AclWI GGATC 2 cut(s) 293, 1778
AcuI CTGAAG 2 cut(s) 2289, 2763
AdeI CACNNNGTG 1 cut(s) 81
AfiI CCNNNNNNNGG 3 cut(s) 1741, 2332, 2720
AflIII ACRYGT 4 cut(s) 736, 937, 1543, 2938
AhlI ACTAGT 2 cut(s) 587, 2543
AjnI CCWGG 6 cut(s) 725, 990, 2143, 2275, 2677, 2695
AjuI GAANNNNNNNTTGG 4 cut(s) 1512, 1544, 2141, 2173
AloI GAACNNNNNNTCC 6 cut(s) 2358, 2390, 2494, 2526, 2652, 2684
Alw21I GWGCWC 2 cut(s) 317, 2421
Alw26I GTCTC 2 cut(s) 495, 2668
AlwI GGATC 2 cut(s) 293, 1778
AoxI GGCC 3 cut(s) 1652, 2194, 2462
ApeKI GCWGC 6 cut(s) 1082, 1145, 1379, 1805, 1919, 2446
Asp700I GAANNNNTTC 1 cut(s) 1950
AspLEI GCGC 2 cut(s) 2006, 2633
AspS9I GGNCC 5 cut(s) 466, 1283, 1859, 1867, 2264
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 7 cut(s) 370, 1038, 1233, 1427, 1428, 2385, 2537
AvaII GGWCC 5 cut(s) 466, 1283, 1859, 1867, 2264
BaeGI GKGCMC 1 cut(s) 2625
BanI GGYRCC 1 cut(s) 2622
BanII GRGCYC 2 cut(s) 317, 2421
BarI GAAGNNNNNNTAC 4 cut(s) 832, 864, 2610, 2642
BbsI GAAGAC 2 cut(s) 1297, 2392
Bbv12I GWGCWC 2 cut(s) 317, 2421
BbvI GCAGC 6 cut(s) 1069, 1132, 1366, 1792, 1906, 2433
BciT130I CCWGG 6 cut(s) 727, 992, 2145, 2277, 2679, 2697
BciVI GTATCC 3 cut(s) 863, 1558, 2607
BclI TGATCA 1 cut(s) 1579
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 2 cut(s) 495, 2668
BcuI ACTAGT 2 cut(s) 587, 2543
BfaI CTAG 6 cut(s) 111, 249, 588, 927, 2544, 2862
BfmI CTRYAG 1 cut(s) 1380
BfuAI ACCTGC 1 cut(s) 274
BfuI GTATCC 3 cut(s) 863, 1558, 2607
BisI GCNGC 7 cut(s) 810, 1083, 1146, 1380, 1806, 1920, 2447
BlpI GCTNAGC 2 cut(s) 813, 2415
BlsI GCNGC 7 cut(s) 811, 1084, 1147, 1381, 1807, 1921, 2448
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 7 cut(s) 727, 791, 992, 2145, 2277, 2679, 2697
Bme18I GGWCC 5 cut(s) 466, 1283, 1859, 1867, 2264
BmgT120I GGNCC 5 cut(s) 466, 1283, 1859, 1867, 2264
BmiI GGNNCC 3 cut(s) 1285, 1869, 2624
BmrFI CCNGG 7 cut(s) 727, 791, 992, 2145, 2277, 2679, 2697
BmrI ACTGGG 1 cut(s) 24
BmuI ACTGGG 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 1297, 2392
BplI GAGNNNNNCTC 2 cut(s) 806, 838
BpmI CTGGAG 3 cut(s) 1626, 2504, 2679
Bpu10I CCTNAGC 1 cut(s) 2828
Bpu1102I GCTNAGC 2 cut(s) 813, 2415
BpuEI CTTGAG 2 cut(s) 1610, 2499
BpuMI CCSGG 1 cut(s) 791
BsaBI GATNNNNATC 1 cut(s) 2565
BsaI GGTCTC 1 cut(s) 2668
BsaJI CCNNGG 5 cut(s) 726, 1551, 2055, 2144, 2275
BsaWI WCCGGW 1 cut(s) 2457
BsaXI ACNNNNNCTCC 2 cut(s) 2677, 2707
Bsc4I CCNNNNNNNGG 3 cut(s) 1741, 2332, 2720
Bse1I ACTGG 6 cut(s) 19, 184, 1655, 1677, 2135, 2197
Bse3DI GCAATG 1 cut(s) 1968
Bse8I GATNNNNATC 1 cut(s) 2565
BseBI CCWGG 6 cut(s) 727, 992, 2145, 2277, 2679, 2697
BseDI CCNNGG 5 cut(s) 726, 1551, 2055, 2144, 2275
BseGI GGATG 8 cut(s) 607, 1111, 1995, 2167, 2271, 2566, 2752, 2905
BseJI GATNNNNATC 1 cut(s) 2565
BseLI CCNNNNNNNGG 3 cut(s) 1741, 2332, 2720
BseMI GCAATG 1 cut(s) 1968
BseNI ACTGG 6 cut(s) 19, 184, 1655, 1677, 2135, 2197
BseRI GAGGAG 1 cut(s) 2395
BseSI GKGCMC 1 cut(s) 2625
BseXI GCAGC 6 cut(s) 1069, 1132, 1366, 1792, 1906, 2433
BseYI CCCAGC 1 cut(s) 2868
BsgI GTGCAG 1 cut(s) 2915
Bsh1236I CGCG 1 cut(s) 2631
BshFI GGCC 3 cut(s) 1654, 2196, 2464
BshNI GGYRCC 1 cut(s) 2622
BsiHKAI GWGCWC 2 cut(s) 317, 2421
BsiSI CCGG 3 cut(s) 318, 791, 2458
BslFI GGGAC 1 cut(s) 1183
BslI CCNNNNNNNGG 3 cut(s) 1741, 2332, 2720
BsmAI GTCTC 2 cut(s) 495, 2668
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 1183
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 3 cut(s) 1654, 2196, 2464
Bso31I GGTCTC 1 cut(s) 2668
Bsp1286I GDGCHC 3 cut(s) 317, 2421, 2625
Bsp1407I TGTACA 1 cut(s) 2032
Bsp143I GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
Bsp1720I GCTNAGC 2 cut(s) 813, 2415
BspACI CCGC 5 cut(s) 809, 1018, 1288, 1624, 1742
BspANI GGCC 3 cut(s) 1654, 2196, 2464
BspFNI CGCG 1 cut(s) 2631
BspLI GGNNCC 3 cut(s) 1285, 1869, 2624
BspMAI CTGCAG 1 cut(s) 1384
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 2 cut(s) 293, 1778
BspT107I GGYRCC 1 cut(s) 2622
BspTNI GGTCTC 1 cut(s) 2668
BsrBI CCGCTC 2 cut(s) 1018, 1624
BsrDI GCAATG 1 cut(s) 1968
BsrGI TGTACA 1 cut(s) 2032
BsrI ACTGG 6 cut(s) 19, 184, 1655, 1677, 2135, 2197
BssECI CCNNGG 5 cut(s) 726, 1551, 2055, 2144, 2275
BssMI GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
BssNAI GTATAC 1 cut(s) 1562
BssT1I CCWWGG 2 cut(s) 1551, 2055
Bst1107I GTATAC 1 cut(s) 1562
Bst2UI CCWGG 6 cut(s) 727, 992, 2145, 2277, 2679, 2697
Bst4CI ACNGT 9 cut(s) 107, 466, 545, 1322, 1559, 1951, 2078, 2120, 2689
Bst6I CTCTTC 1 cut(s) 371
BstAUI TGTACA 1 cut(s) 2032
BstC8I GCNNGC 3 cut(s) 1397, 1959, 2726
BstEII GGTNACC 1 cut(s) 2525
BstENI CCTNNNNNAGG 1 cut(s) 2718
BstF5I GGATG 8 cut(s) 607, 1111, 1995, 2167, 2271, 2566, 2752, 2905
BstFNI CGCG 1 cut(s) 2631
BstHHI GCGC 2 cut(s) 2006, 2633
BstKTI GATC 7 cut(s) 301, 499, 1241, 1420, 1582, 1786, 2291
BstMAI GTCTC 2 cut(s) 495, 2668
BstMBI GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
BstMWI GCNNNNNNNGC 5 cut(s) 116, 254, 1037, 1916, 2730
BstNI CCWGG 6 cut(s) 727, 992, 2145, 2277, 2679, 2697
BstNSI RCATGY 3 cut(s) 740, 941, 1547
BstPI GGTNACC 1 cut(s) 2525
BstSCI CCNGG 7 cut(s) 725, 789, 990, 2143, 2275, 2677, 2695
BstSFI CTRYAG 1 cut(s) 1380
BstSLI GKGCMC 1 cut(s) 2625
BstUI CGCG 1 cut(s) 2631
BstV1I GCAGC 6 cut(s) 1069, 1132, 1366, 1792, 1906, 2433
BstV2I GAAGAC 2 cut(s) 1297, 2392
BstXI CCANNNNNNTGG 2 cut(s) 14, 2657
BstZ17I GTATAC 1 cut(s) 1562
BsuI GTATCC 3 cut(s) 863, 1558, 2607
BsuRI GGCC 3 cut(s) 1654, 2196, 2464
BtsCI GGATG 8 cut(s) 607, 1111, 1995, 2167, 2271, 2566, 2752, 2905
BtsI GCAGTG 3 cut(s) 250, 409, 1999
BtsIMutI CAGTG 9 cut(s) 112, 177, 250, 409, 620, 1662, 1999, 2125, 2190
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 1397, 1959, 2726
CfoI GCGC 2 cut(s) 2006, 2633
Cfr13I GGNCC 5 cut(s) 466, 1283, 1859, 1867, 2264
CsiI ACCWGGT 1 cut(s) 2677
CspCI CAANNNNNGTGG 4 cut(s) 647, 682, 1143, 1178
DpnI GATC 7 cut(s) 300, 498, 1240, 1419, 1581, 1785, 2290
DpnII GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
DraIII CACNNNGTG 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 371
EarI CTCTTC 1 cut(s) 371
Ecl136II GAGCTC 2 cut(s) 315, 2419
Eco130I CCWWGG 2 cut(s) 1551, 2055
Eco147I AGGCCT 1 cut(s) 2464
Eco24I GRGCYC 2 cut(s) 317, 2421
Eco31I GGTCTC 1 cut(s) 2668
Eco47I GGWCC 5 cut(s) 466, 1283, 1859, 1867, 2264
Eco53kI GAGCTC 2 cut(s) 315, 2419
Eco57I CTGAAG 2 cut(s) 2289, 2763
Eco91I GGTNACC 1 cut(s) 2525
EcoICRI GAGCTC 2 cut(s) 315, 2419
EcoNI CCTNNNNNAGG 1 cut(s) 2718
EcoO109I RGGNCCY 2 cut(s) 1283, 1867
EcoO65I GGTNACC 1 cut(s) 2525
EcoRI GAATTC 6 cut(s) 19, 148, 286, 1021, 1060, 2811
EcoRII CCWGG 6 cut(s) 725, 990, 2143, 2275, 2677, 2695
EcoT14I CCWWGG 2 cut(s) 1551, 2055
EcoT38I GRGCYC 2 cut(s) 317, 2421
ErhI CCWWGG 2 cut(s) 1551, 2055
Esp3I CGTCTC 1 cut(s) 495
FaqI GGGAC 1 cut(s) 1183
FauI CCCGC 2 cut(s) 1295, 1735
FauNDI CATATG 1 cut(s) 136
FbaI TGATCA 1 cut(s) 1579
FblI GTMKAC 2 cut(s) 1460, 1561
Fnu4HI GCNGC 7 cut(s) 810, 1083, 1146, 1380, 1806, 1920, 2447
FokI GGATG 8 cut(s) 614, 1118, 1982, 2174, 2258, 2553, 2759, 2892
FriOI GRGCYC 2 cut(s) 317, 2421
Fsp4HI GCNGC 7 cut(s) 810, 1083, 1146, 1380, 1806, 1920, 2447
FspBI CTAG 6 cut(s) 111, 249, 588, 927, 2544, 2862
GlaI GCGC 2 cut(s) 2005, 2632
GluI GCNGC 7 cut(s) 810, 1083, 1146, 1380, 1806, 1920, 2447
GsaI CCCAGC 1 cut(s) 2872
GsuI CTGGAG 3 cut(s) 1626, 2504, 2679
HaeIII GGCC 3 cut(s) 1654, 2196, 2464
HapII CCGG 3 cut(s) 318, 791, 2458
HhaI GCGC 2 cut(s) 2006, 2633
Hin6I GCGC 2 cut(s) 2004, 2631
HinP1I GCGC 2 cut(s) 2004, 2631
HincII GTYRAC 3 cut(s) 787, 988, 1341
HindII GTYRAC 3 cut(s) 787, 988, 1341
HinfI GANTC 8 cut(s) 458, 641, 649, 799, 1000, 1130, 1217, 2207
HpaI GTTAAC 1 cut(s) 787
HpaII CCGG 3 cut(s) 318, 791, 2458
HphI GGTGA 7 cut(s) 370, 1038, 1233, 1427, 1428, 2385, 2537
HpyCH4III ACNGT 9 cut(s) 107, 466, 545, 1322, 1559, 1951, 2078, 2120, 2689
HpyCH4IV ACGT 2 cut(s) 2834, 2940
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 254, 1037, 1916, 2730
HpySE526I ACGT 2 cut(s) 2834, 2940
HspAI GCGC 2 cut(s) 2004, 2631
Ksp22I TGATCA 1 cut(s) 1579
KspAI GTTAAC 1 cut(s) 787
Kzo9I GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
LmnI GCTCC 5 cut(s) 320, 1607, 1621, 2485, 2698
Lsp1109I GCAGC 6 cut(s) 1069, 1132, 1366, 1792, 1906, 2433
MabI ACCWGGT 1 cut(s) 2677
MaeI CTAG 6 cut(s) 111, 249, 588, 927, 2544, 2862
MaeII ACGT 2 cut(s) 2834, 2940
MaeIII GTNAC 6 cut(s) 617, 761, 962, 1214, 2525, 2941
MalI GATC 7 cut(s) 300, 498, 1240, 1419, 1581, 1785, 2290
MbiI CCGCTC 2 cut(s) 1018, 1624
MboI GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
MfeI CAATTG 2 cut(s) 1334, 2255
MhlI GDGCHC 3 cut(s) 317, 2421, 2625
MlyI GAGTC 2 cut(s) 1139, 1211
MmeI TCCRAC 6 cut(s) 364, 502, 683, 884, 2139, 2817
MroXI GAANNNNTTC 1 cut(s) 1950
MseI TTAA 8 cut(s) 44, 173, 578, 786, 1254, 1430, 1712, 1724
MslI CAYNNNNRTG 2 cut(s) 441, 1077
MspA1I CMGCKG 1 cut(s) 1631
MspI CCGG 3 cut(s) 318, 791, 2458
MspR9I CCNGG 7 cut(s) 727, 791, 992, 2145, 2277, 2679, 2697
MunI CAATTG 2 cut(s) 1334, 2255
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 6 cut(s) 727, 992, 2145, 2277, 2679, 2697
MvnI CGCG 1 cut(s) 2631
MwoI GCNNNNNNNGC 5 cut(s) 116, 254, 1037, 1916, 2730
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 136
NdeII GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
NlaIV GGNNCC 3 cut(s) 1285, 1869, 2624
NmuCI GTSAC 2 cut(s) 1214, 2525
NspI RCATGY 3 cut(s) 740, 941, 1547
PaqCI CACCTGC 1 cut(s) 274
PceI AGGCCT 1 cut(s) 2464
PciI ACATGT 3 cut(s) 736, 937, 1543
PctI GAATGC 1 cut(s) 531
PdmI GAANNNNTTC 1 cut(s) 1950
PfeI GAWTC 6 cut(s) 458, 641, 649, 799, 1000, 2207
PkrI GCNGC 7 cut(s) 811, 1084, 1147, 1381, 1807, 1921, 2448
PleI GAGTC 2 cut(s) 1138, 1211
PpsI GAGTC 2 cut(s) 1138, 1211
PpuMI RGGWCCY 2 cut(s) 1283, 1867
PscI ACATGT 3 cut(s) 736, 937, 1543
Psp124BI GAGCTC 2 cut(s) 317, 2421
Psp5II RGGWCCY 2 cut(s) 1283, 1867
Psp6I CCWGG 6 cut(s) 725, 990, 2143, 2275, 2677, 2695
PspEI GGTNACC 1 cut(s) 2525
PspFI CCCAGC 1 cut(s) 2868
PspGI CCWGG 6 cut(s) 725, 990, 2143, 2275, 2677, 2695
PspN4I GGNNCC 3 cut(s) 1285, 1869, 2624
PspPI GGNCC 5 cut(s) 466, 1283, 1859, 1867, 2264
PspPPI RGGWCCY 2 cut(s) 1283, 1867
PsrI GAACNNNNNNTAC 2 cut(s) 2754, 2786
PstI CTGCAG 1 cut(s) 1384
PvuII CAGCTG 1 cut(s) 1631
RseI CAYNNNNRTG 2 cut(s) 441, 1077
SacI GAGCTC 2 cut(s) 317, 2421
SaqAI TTAA 8 cut(s) 44, 173, 578, 786, 1254, 1430, 1712, 1724
SatI GCNGC 7 cut(s) 810, 1083, 1146, 1380, 1806, 1920, 2447
Sau3AI GATC 7 cut(s) 298, 496, 1238, 1417, 1579, 1783, 2288
Sau96I GGNCC 5 cut(s) 466, 1283, 1859, 1867, 2264
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 2 cut(s) 1139, 1211
ScrFI CCNGG 7 cut(s) 727, 791, 992, 2145, 2277, 2679, 2697
SduI GDGCHC 3 cut(s) 317, 2421, 2625
SexAI ACCWGGT 1 cut(s) 2677
SfcI CTRYAG 1 cut(s) 1380
SinI GGWCC 5 cut(s) 466, 1283, 1859, 1867, 2264
SmiMI CAYNNNNRTG 2 cut(s) 441, 1077
SmlI CTYRAG 2 cut(s) 1589, 2514
SmoI CTYRAG 2 cut(s) 1589, 2514
SpeI ACTAGT 2 cut(s) 587, 2543
SseBI AGGCCT 1 cut(s) 2464
SsiI CCGC 5 cut(s) 809, 1018, 1288, 1624, 1742
SspI AATATT 1 cut(s) 2045
SspMI CTAG 6 cut(s) 111, 249, 588, 927, 2544, 2862
SstI GAGCTC 2 cut(s) 317, 2421
StuI AGGCCT 1 cut(s) 2464
StyD4I CCNGG 7 cut(s) 725, 789, 990, 2143, 2275, 2677, 2695
StyI CCWWGG 2 cut(s) 1551, 2055
TaaI ACNGT 9 cut(s) 107, 466, 545, 1322, 1559, 1951, 2078, 2120, 2689
TaiI ACGT 2 cut(s) 2837, 2943
TaqI TCGA 3 cut(s) 652, 1058, 1420
TatI WGTACW 5 cut(s) 584, 717, 918, 2032, 2314
TauI GCSGC 1 cut(s) 812
TfiI GAWTC 6 cut(s) 458, 641, 649, 799, 1000, 2207
Tru1I TTAA 8 cut(s) 44, 173, 578, 786, 1254, 1430, 1712, 1724
Tru9I TTAA 8 cut(s) 44, 173, 578, 786, 1254, 1430, 1712, 1724
TscAI CASTG 9 cut(s) 112, 184, 250, 409, 620, 1662, 2006, 2125, 2197
TseFI GTSAC 2 cut(s) 1214, 2525
TseI GCWGC 6 cut(s) 1082, 1145, 1379, 1805, 1919, 2446
Tsp45I GTSAC 2 cut(s) 1214, 2525
TspGWI ACGGA 1 cut(s) 1214
TspRI CASTG 9 cut(s) 112, 184, 250, 409, 620, 1662, 2006, 2125, 2197
VpaK11BI GGWCC 5 cut(s) 466, 1283, 1859, 1867, 2264
XagI CCTNNNNNAGG 1 cut(s) 2718
XceI RCATGY 3 cut(s) 740, 941, 1547
XcmI CCANNNNNNNNNTGG 2 cut(s) 1883, 2333
XmiI GTMKAC 2 cut(s) 1460, 1561
XmnI GAANNNNTTC 1 cut(s) 1950
XspI CTAG 6 cut(s) 111, 249, 588, 927, 2544, 2862
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.