MD09G1044300.v1.1
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000472
Physical Location & Seq
Reverse (-)
2871165 .. 2874944
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1044300.v1.1.491

Sequence Viewer

Length: 2025 bp
ATGGGTTCTTTGTTTTATGCTCTCATTAGACTGATGACCAATGGGACTGCGGAGCTCTCAATGACTGTCTCTAGACTTGCCGTCTTCTACAAGCAAAGAGATTTCTATTTTTATCCTGCTTGGGCGTATTCCATTCCAGCTATCATTTTAAAGATTCCATTTTCATTGTTGGATGCTTTTCTTTGGACATCTATGACTTATTACGTCATTGGTTACAGTCCTGAGCCTGACAGGTTCTTCAAGCAGCTCCTTATTTTATTCCTTATGCATCAAGTATCAATATCGTTGTTTCGTTTGATTGCCTCATTGGTTCGGACTCCTACAGTAGCAGCAACCATCGCTCTCTTCACTTTAATTGTAATGTTTCTGTTTGGCGGCTTTGTGATTCCGAGATCTTCTCTGCCTGCTTGGTTGGAATGGGGCTTTTGGATTTCGCCTCTAACATTTGGAGAAATAGGTGTTTCAATAAATGAATTCCATGCTCCAAGGTGGACAAAGATTTTATCTTTGAATGTCACTATAGGCCAGCAAGCACTAGAAAGCCGTGGTCTAAACTTCGATGACAAGTTTTATTGGATATCAGTAGGAGCTTTACTTGGATTTTGGATGAAATTGAAAGATCAAGGTTTTTCTCCAAATCGACTACAGCTTCTTCAAGATGTAACCGGTGCATTTAGACCTGGAGTTCTTACAGCTTTAATGGGAGTTAGTGGAGCTGGAAAAACAACACTGTTGGATGTCCTTTCTGGAAGAAAAACTGGTGGAACCATCGAAGGAGACATCAGAATTGGAGGGTACCCTAAAGTCCAAGAAACATATGCCAGAATATCCGGTTATTGTGAGCAAAGTGACATACACTCTCCACATATTACAGTCGAAGAATCAGTAGCATACTCAGCTTGGTTGCGCTTGCCCGTCCAGATTGATAGGCCTACAAGATCTGTAACTCGACGAAATCAATTAGTTGGCACGCCTGGTGGTAGTGGGATATCGACAGAGCAACGAAAAAGACTTACAATAGCGGTAGAGCTTGTTTCAAATCCATCCATAATATTTATGGACGAACCAACCTCGGGTTTAGATGCTAGAGCAGCTGCTATAGTCATGAGAGTTGTGAAAAATATTGTTAGCACAAGGAGGACAGTTGTATGCACTATTCACCAGCCAAGTATTGATATCTTCGAAGCATTTGACGAGCTTATTCTGATGAAAAGAGGAGGACAAGTAATATTCAACGGGGAGCTCGGTCGAAATTCAAGTAAACTCATCGAATACTTTGAGGCTATTCCTGGTGCTCCAAAAATCAAAGAGAATTACAACCCAGCAACGTGGATGTTAGAGGTCGCCAGTTCTTCTGCAGAAGCTCAACTTGCCATAGATTTTGCTCATCTCTACAAAGACTCACACCTATGCCAGAGGAACAACCAACTAGTAAGAGATCTCCAAATTCCAGAACAAGGCTCAGAGGAACTACATTTCTCTACTCGCTTTCCGCAAAGTGGGTGGGAGCAATTCAAAGCATGCTTATGGAAGCGGCATCTAACCTACTGGAGAAGTCCGAGATACAACCTGGGGAGATTGATTTTTACTGCAGCATGTTCTTTGTTATTTGGAGCACTTCTTTGGCAGAAGGGACAGAAAATTATTGTATACCGAGAAAGGTTTGCTGGAATGTACTCTTCATGGGCATATTCGTTTTCACAGGTGATCGTAGAAATTCCATATATAACGCTACAAGCAGCTTTATTTTCGACGATTACATATCTGGCTATAAATTTCCACTGGTCACTCTACAAAGCATTTGGTATTTCTATACTACGTTTTGTACATTGCTCTGCTTCAACTTCTTCGAAAATTCCTGTATGGTGGATTTGGGGTTACTGGATTTACCCCCTAGCCTGGTCCCTAAAAGGTTTTCTCACTTCACAGTACGGCGATCTGGAGAAGGAAATAGTAGTACGTGGAGAGCAAAAGGCAATTGGCGCTTTCTTAGAAGTATTTACGGGTATAACTACAACGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

675

Amino Acids

76.27

Weight (kDa)

9.26

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 1 - 159 2.2e-35 ABC-2 type transporter
PDR_assoc PF08370 164 - 202 1.6e-10 Plant PDR ABC transporter associated
ABC_tran PF00005 218 - 358 3.7e-17 ABC transporter
ABC2_membrane PF01061 547 - 605 1.3e-11 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 795
AccB1I GGYRCC 1 cut(s) 795
AccI GTMKAC 1 cut(s) 1650
AciI CCGC 5 cut(s) 50, 375, 1022, 1493, 1534
AcsI RAATTY 6 cut(s) 473, 1252, 1446, 1716, 1774, 1854
AfaI GTAC 5 cut(s) 797, 1676, 1827, 1931, 1959
AfiI CCNNNNNNNGG 4 cut(s) 1073, 1457, 1499, 1899
AgeI ACCGGT 1 cut(s) 665
AhdI GACNNNNNGTC 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 1429
AjnI CCWGG 5 cut(s) 679, 973, 1288, 1569, 1898
Alw21I GWGCWC 4 cut(s) 57, 1245, 1297, 1618
Alw26I GTCTC 2 cut(s) 73, 771
Ama87I CYCGRG 1 cut(s) 1072
AoxI GGCC 2 cut(s) 523, 929
ApeKI GCWGC 6 cut(s) 244, 329, 1091, 1094, 1592, 1739
ApoI RAATTY 6 cut(s) 473, 1252, 1446, 1716, 1774, 1854
AsiGI ACCGGT 1 cut(s) 665
Asp718I GGTACC 1 cut(s) 795
AspLEI GCGC 2 cut(s) 909, 1985
AspS9I GGNCC 1 cut(s) 1902
AsuHPI GGTGA 2 cut(s) 1151, 1717
AsuII TTCGAA 2 cut(s) 1182, 1850
AvaI CYCGRG 1 cut(s) 1072
AvaII GGWCC 1 cut(s) 1902
BanI GGYRCC 1 cut(s) 795
BanII GRGCYC 2 cut(s) 57, 1245
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 4 cut(s) 57, 1245, 1297, 1618
BbvI GCAGC 6 cut(s) 256, 341, 1081, 1103, 1604, 1751
BccI CCATC 3 cut(s) 344, 776, 1051
BceAI ACGGC 3 cut(s) 65, 528, 1948
BciT130I CCWGG 5 cut(s) 681, 975, 1290, 1571, 1900
BcoDI GTCTC 2 cut(s) 73, 771
BcuI ACTAGT 1 cut(s) 1429
BfaI CTAG 6 cut(s) 72, 536, 1086, 1430, 1895, 2023
BfmI CTRYAG 6 cut(s) 321, 519, 644, 1098, 1356, 1590
BfoI RGCGCY 1 cut(s) 1986
BglII AGATCT 3 cut(s) 392, 938, 1438
BisI GCNGC 8 cut(s) 245, 330, 376, 1092, 1095, 1535, 1593, 1740
BlsI GCNGC 8 cut(s) 246, 331, 377, 1093, 1096, 1536, 1594, 1741
Bme1390I CCNGG 5 cut(s) 681, 975, 1290, 1571, 1900
Bme18I GGWCC 1 cut(s) 1902
BmeRI GACNNNNNGTC 1 cut(s) 80
BmeT110I CYCGRG 1 cut(s) 1072
BmgT120I GGNCC 1 cut(s) 1902
BmiI GGNNCC 3 cut(s) 766, 797, 1904
BmrFI CCNGG 5 cut(s) 681, 975, 1290, 1571, 1900
BmsI GCATC 4 cut(s) 163, 277, 1072, 1546
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 382, 414
BpmI CTGGAG 3 cut(s) 702, 1570, 1961
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 2 cut(s) 1182, 1850
BsaAI YACGTR 1 cut(s) 1961
BsaJI CCNNGG 4 cut(s) 485, 544, 1071, 1570
BsaWI WCCGGW 2 cut(s) 665, 830
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 4 cut(s) 1073, 1457, 1499, 1899
Bse118I RCCGGY 1 cut(s) 665
Bse1I ACTGG 5 cut(s) 763, 1347, 1553, 1787, 1886
Bse3DI GCAATG 1 cut(s) 1828
BseBI CCWGG 5 cut(s) 681, 975, 1290, 1571, 1900
BseDI CCNNGG 4 cut(s) 485, 544, 1071, 1570
BseGI GGATG 5 cut(s) 178, 612, 742, 1043, 1338
BseLI CCNNNNNNNGG 4 cut(s) 1073, 1457, 1499, 1899
BseMI GCAATG 1 cut(s) 1828
BseMII CTCAG 3 cut(s) 213, 909, 1476
BseNI ACTGG 5 cut(s) 763, 1347, 1553, 1787, 1886
BseRI GAGGAG 1 cut(s) 1230
BseXI GCAGC 6 cut(s) 256, 341, 1081, 1103, 1604, 1751
BseYI CCCAGC 1 cut(s) 1321
Bsh1285I CGRYCG 1 cut(s) 1249
BshFI GGCC 2 cut(s) 525, 931
BshNI GGYRCC 1 cut(s) 795
BshTI ACCGGT 1 cut(s) 665
BsiEI CGRYCG 1 cut(s) 1249
BsiHKAI GWGCWC 4 cut(s) 57, 1245, 1297, 1618
BsiHKCI CYCGRG 1 cut(s) 1072
BsiSI CCGG 2 cut(s) 666, 831
BslFI GGGAC 3 cut(s) 58, 1647, 1888
BslI CCNNNNNNNGG 4 cut(s) 1073, 1457, 1499, 1899
BsmAI GTCTC 2 cut(s) 73, 771
BsmFI GGGAC 3 cut(s) 58, 1647, 1888
BsnI GGCC 2 cut(s) 525, 931
BsoBI CYCGRG 1 cut(s) 1072
Bsp119I TTCGAA 2 cut(s) 1182, 1850
Bsp1286I GDGCHC 4 cut(s) 57, 1245, 1297, 1618
Bsp1407I TGTACA 1 cut(s) 1825
Bsp143I GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
BspACI CCGC 5 cut(s) 50, 375, 1022, 1493, 1534
BspANI GGCC 2 cut(s) 525, 931
BspCNI CTCAG 3 cut(s) 214, 908, 1475
BspHI TCATGA 1 cut(s) 1104
BspLI GGNNCC 3 cut(s) 766, 797, 1904
BspMAI CTGCAG 2 cut(s) 1360, 1594
BspT104I TTCGAA 2 cut(s) 1182, 1850
BspT107I GGYRCC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 1828
BsrFI RCCGGY 1 cut(s) 665
BsrGI TGTACA 1 cut(s) 1825
BsrI ACTGG 5 cut(s) 763, 1347, 1553, 1787, 1886
BssAI RCCGGY 1 cut(s) 665
BssECI CCNNGG 4 cut(s) 485, 544, 1071, 1570
BssMI GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
BssNAI GTATAC 1 cut(s) 1651
BssT1I CCWWGG 1 cut(s) 485
Bst1107I GTATAC 1 cut(s) 1651
Bst2UI CCWGG 5 cut(s) 681, 975, 1290, 1571, 1900
Bst4CI ACNGT 7 cut(s) 67, 218, 325, 732, 874, 1144, 1929
Bst6I CTCTTC 2 cut(s) 350, 1684
BstAUI TGTACA 1 cut(s) 1825
BstBAI YACGTR 1 cut(s) 1961
BstBI TTCGAA 2 cut(s) 1182, 1850
BstC8I GCNNGC 6 cut(s) 405, 527, 531, 911, 971, 1522
BstDEI CTNAG 4 cut(s) 222, 895, 1462, 1990
BstDSI CCRYGG 1 cut(s) 544
BstF5I GGATG 5 cut(s) 178, 612, 742, 1043, 1338
BstH2I RGCGCY 1 cut(s) 1986
BstHHI GCGC 2 cut(s) 909, 1985
BstKTI GATC 7 cut(s) 395, 622, 941, 1441, 1710, 1939, 2022
BstMAI GTCTC 2 cut(s) 73, 771
BstMBI GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
BstMCI CGRYCG 1 cut(s) 1249
BstMWI GCNNNNNNNGC 5 cut(s) 338, 896, 1091, 1370, 1982
BstNI CCWGG 5 cut(s) 681, 975, 1290, 1571, 1900
BstNSI RCATGY 2 cut(s) 1524, 1599
BstSCI CCNGG 5 cut(s) 679, 973, 1288, 1569, 1898
BstSFI CTRYAG 6 cut(s) 321, 519, 644, 1098, 1356, 1590
BstV1I GCAGC 6 cut(s) 256, 341, 1081, 1103, 1604, 1751
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 3 cut(s) 392, 938, 1438
BstXI CCANNNNNNTGG 1 cut(s) 1329
BstYI RGATCY 3 cut(s) 392, 938, 1438
BstZ17I GTATAC 1 cut(s) 1651
BsuRI GGCC 2 cut(s) 525, 931
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 5 cut(s) 178, 612, 742, 1043, 1338
BtsIMutI CAGTG 2 cut(s) 728, 1780
Cac8I GCNNGC 6 cut(s) 405, 527, 531, 911, 971, 1522
CciI TCATGA 1 cut(s) 1104
CfoI GCGC 2 cut(s) 909, 1985
Cfr10I RCCGGY 1 cut(s) 665
Cfr13I GGNCC 1 cut(s) 1902
Csp6I GTAC 5 cut(s) 796, 1675, 1826, 1930, 1958
CspAI ACCGGT 1 cut(s) 665
CspCI CAANNNNNGTGG 2 cut(s) 1484, 1519
CviAII CATG 5 cut(s) 479, 1105, 1521, 1596, 1683
CviQI GTAC 5 cut(s) 796, 1675, 1826, 1930, 1958
DdeI CTNAG 4 cut(s) 222, 895, 1462, 1990
DpnI GATC 7 cut(s) 394, 621, 940, 1440, 1709, 1938, 2021
DpnII GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
DraI TTTAAA 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 350, 1684
Eam1105I GACNNNNNGTC 1 cut(s) 80
EarI CTCTTC 2 cut(s) 350, 1684
Ecl136II GAGCTC 2 cut(s) 55, 1243
Eco130I CCWWGG 1 cut(s) 485
Eco147I AGGCCT 1 cut(s) 931
Eco24I GRGCYC 2 cut(s) 57, 1245
Eco32I GATATC 3 cut(s) 579, 990, 1177
Eco47I GGWCC 1 cut(s) 1902
Eco53kI GAGCTC 2 cut(s) 55, 1243
Eco88I CYCGRG 1 cut(s) 1072
EcoICRI GAGCTC 2 cut(s) 55, 1243
EcoRI GAATTC 1 cut(s) 473
EcoRII CCWGG 5 cut(s) 679, 973, 1288, 1569, 1898
EcoRV GATATC 3 cut(s) 579, 990, 1177
EcoT14I CCWWGG 1 cut(s) 485
EcoT22I ATGCAT 1 cut(s) 270
EcoT38I GRGCYC 2 cut(s) 57, 1245
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 5 cut(s) 482, 1108, 1524, 1599, 1686
FalI AAGNNNNNCTT 2 cut(s) 1353, 1385
FaqI GGGAC 3 cut(s) 58, 1647, 1888
FatI CATG 5 cut(s) 478, 1104, 1520, 1595, 1682
FauNDI CATATG 1 cut(s) 817
FblI GTMKAC 1 cut(s) 1650
Fnu4HI GCNGC 8 cut(s) 245, 330, 376, 1092, 1095, 1535, 1593, 1740
FokI GGATG 5 cut(s) 185, 619, 749, 1030, 1345
FriOI GRGCYC 2 cut(s) 57, 1245
Fsp4HI GCNGC 8 cut(s) 245, 330, 376, 1092, 1095, 1535, 1593, 1740
FspBI CTAG 6 cut(s) 72, 536, 1086, 1430, 1895, 2023
GlaI GCGC 2 cut(s) 908, 1984
GluI GCNGC 8 cut(s) 245, 330, 376, 1092, 1095, 1535, 1593, 1740
GsaI CCCAGC 1 cut(s) 1325
GsuI CTGGAG 3 cut(s) 702, 1570, 1961
HaeII RGCGCY 1 cut(s) 1986
HaeIII GGCC 2 cut(s) 525, 931
HapII CCGG 2 cut(s) 666, 831
HhaI GCGC 2 cut(s) 909, 1985
Hin1II CATG 5 cut(s) 482, 1108, 1524, 1599, 1686
Hin6I GCGC 2 cut(s) 907, 1983
HinP1I GCGC 2 cut(s) 907, 1983
HinfI GANTC 5 cut(s) 154, 316, 385, 881, 1400
HpaII CCGG 2 cut(s) 666, 831
HphI GGTGA 2 cut(s) 1151, 1717
Hpy166II GTNNAC 3 cut(s) 492, 1262, 1651
Hpy188I TCNGA 6 cut(s) 315, 390, 785, 1206, 1465, 1560
Hpy188III TCNNGA 8 cut(s) 72, 221, 656, 747, 919, 1105, 1451, 1940
Hpy8I GTNNAC 3 cut(s) 492, 1262, 1651
Hpy99I CGWCG 2 cut(s) 954, 1756
HpyAV CCTTC 3 cut(s) 767, 1624, 1939
HpyCH4III ACNGT 7 cut(s) 67, 218, 325, 732, 874, 1144, 1929
HpyCH4IV ACGT 4 cut(s) 204, 1328, 1819, 1960
HpyCH4V TGCA 5 cut(s) 268, 671, 1152, 1358, 1592
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 896, 1091, 1370, 1982
HpyF3I CTNAG 4 cut(s) 222, 895, 1462, 1990
HpySE526I ACGT 4 cut(s) 204, 1328, 1819, 1960
Hsp92II CATG 5 cut(s) 482, 1108, 1524, 1599, 1686
HspAI GCGC 2 cut(s) 907, 1983
KpnI GGTACC 1 cut(s) 799
Kzo9I GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
LmnI GCTCC 9 cut(s) 52, 252, 487, 587, 713, 1240, 1300, 1507, 1613
Lsp1109I GCAGC 6 cut(s) 256, 341, 1081, 1103, 1604, 1751
LweI GCATC 4 cut(s) 163, 277, 1072, 1546
MaeI CTAG 6 cut(s) 72, 536, 1086, 1430, 1895, 2023
MaeII ACGT 4 cut(s) 204, 1328, 1819, 1960
MaeIII GTNAC 7 cut(s) 212, 514, 661, 848, 943, 1785, 1877
MalI GATC 7 cut(s) 394, 621, 940, 1440, 1709, 1938, 2021
MboI GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
MfeI CAATTG 1 cut(s) 1977
MflI RGATCY 3 cut(s) 392, 938, 1438
MhlI GDGCHC 4 cut(s) 57, 1245, 1297, 1618
MlyI GAGTC 2 cut(s) 310, 1394
MmeI TCCRAC 3 cut(s) 150, 393, 714
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 3 cut(s) 149, 353, 698
MslI CAYNNNNRTG 2 cut(s) 1408, 1525
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 2 cut(s) 666, 831
MspR9I CCNGG 5 cut(s) 681, 975, 1290, 1571, 1900
MunI CAATTG 1 cut(s) 1977
MvaI CCWGG 5 cut(s) 681, 975, 1290, 1571, 1900
MwoI GCNNNNNNNGC 5 cut(s) 338, 896, 1091, 1370, 1982
NdeI CATATG 1 cut(s) 817
NdeII GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
NlaIII CATG 5 cut(s) 482, 1108, 1524, 1599, 1686
NlaIV GGNNCC 3 cut(s) 766, 797, 1904
NmuCI GTSAC 3 cut(s) 514, 848, 1785
NsiI ATGCAT 1 cut(s) 270
NspI RCATGY 2 cut(s) 1524, 1599
NspV TTCGAA 2 cut(s) 1182, 1850
PaeI GCATGC 1 cut(s) 1524
PagI TCATGA 1 cut(s) 1104
PceI AGGCCT 1 cut(s) 931
PfeI GAWTC 3 cut(s) 154, 385, 881
PinAI ACCGGT 1 cut(s) 665
PkrI GCNGC 8 cut(s) 246, 331, 377, 1093, 1096, 1536, 1594, 1741
PleI GAGTC 2 cut(s) 310, 1394
PpsI GAGTC 2 cut(s) 310, 1394
Ppu21I YACGTR 1 cut(s) 1961
Psp124BI GAGCTC 2 cut(s) 57, 1245
Psp6I CCWGG 5 cut(s) 679, 973, 1288, 1569, 1898
PspFI CCCAGC 1 cut(s) 1321
PspGI CCWGG 5 cut(s) 679, 973, 1288, 1569, 1898
PspN4I GGNNCC 3 cut(s) 766, 797, 1904
PspPI GGNCC 1 cut(s) 1902
PstI CTGCAG 2 cut(s) 1360, 1594
PsuI RGATCY 3 cut(s) 392, 938, 1438
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 5 cut(s) 797, 1676, 1827, 1931, 1959
RsaNI GTAC 5 cut(s) 796, 1675, 1826, 1930, 1958
RseI CAYNNNNRTG 2 cut(s) 1408, 1525
SacI GAGCTC 2 cut(s) 57, 1245
SaqAI TTAA 3 cut(s) 149, 353, 698
SatI GCNGC 8 cut(s) 245, 330, 376, 1092, 1095, 1535, 1593, 1740
Sau3AI GATC 7 cut(s) 392, 619, 938, 1438, 1707, 1936, 2019
Sau96I GGNCC 1 cut(s) 1902
SchI GAGTC 2 cut(s) 310, 1394
ScrFI CCNGG 5 cut(s) 681, 975, 1290, 1571, 1900
SduI GDGCHC 4 cut(s) 57, 1245, 1297, 1618
SfaNI GCATC 4 cut(s) 163, 277, 1072, 1546
SfcI CTRYAG 6 cut(s) 321, 519, 644, 1098, 1356, 1590
SfuI TTCGAA 2 cut(s) 1182, 1850
SinI GGWCC 1 cut(s) 1902
SmiMI CAYNNNNRTG 2 cut(s) 1408, 1525
SpeI ACTAGT 1 cut(s) 1429
SphI GCATGC 1 cut(s) 1524
SseBI AGGCCT 1 cut(s) 931
SsiI CCGC 5 cut(s) 50, 375, 1022, 1493, 1534
SspI AATATT 3 cut(s) 1053, 1123, 1230
SspMI CTAG 6 cut(s) 72, 536, 1086, 1430, 1895, 2023
SstI GAGCTC 2 cut(s) 57, 1245
StuI AGGCCT 1 cut(s) 931
StyD4I CCNGG 5 cut(s) 679, 973, 1288, 1569, 1898
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 7 cut(s) 67, 218, 325, 732, 874, 1144, 1929
TaiI ACGT 4 cut(s) 207, 1331, 1822, 1963
TaqII GACCGA 1 cut(s) 1235
TatI WGTACW 2 cut(s) 1674, 1825
TauI GCSGC 2 cut(s) 378, 1537
TfiI GAWTC 3 cut(s) 154, 385, 881
Tru1I TTAA 3 cut(s) 149, 353, 698
Tru9I TTAA 3 cut(s) 149, 353, 698
TscAI CASTG 2 cut(s) 735, 1787
TseFI GTSAC 3 cut(s) 514, 848, 1785
TseI GCWGC 6 cut(s) 244, 329, 1091, 1094, 1592, 1739
Tsp45I GTSAC 3 cut(s) 514, 848, 1785
TspDTI ATGAA 5 cut(s) 153, 486, 623, 1223, 1671
TspRI CASTG 2 cut(s) 735, 1787
VpaK11BI GGWCC 1 cut(s) 1902
XapI RAATTY 6 cut(s) 473, 1252, 1446, 1716, 1774, 1854
XbaI TCTAGA 1 cut(s) 71
XceI RCATGY 2 cut(s) 1524, 1599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 1650
XspI CTAG 6 cut(s) 72, 536, 1086, 1430, 1895, 2023
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.