Rh2DG635200

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000472
Physical Location & Seq
Forward (+)
86361949 .. 86368213
6265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG635200.1

Sequence Viewer

Length: 3624 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACTTCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGGTCAATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCGAACTTCACTCATGGGTTGTAACAAGGAGGACGACGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTCACAAAGCTAGAAGCCCTGGAACGTCGTGTGTTCATTGATAAACTTCTCAAGCAAATAGAAGGAGATAATCAACGCCTCTTACAGAAACTTAAAGAAAGAATAGACAGAGTGGGACTGCAATTGCCAACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCCCTTCCAACACTATGGAACACGCTCAAAAGCTCTCTCTCTGTCATGACACAGATAATTGGATGCAAGTCTGAAGCATACAATCTAAAAATTCTCAAAGATGTCAGCGGCATCATCAAGCCTTCAAGGATGACTCTTTTACTTGGTCCTCCAGGCTGTGGAAAAACAACCTTATTACAGGCACTTGCAGGAAAACATAACCAATCTCTCAAGGTTCAAGGAGAAATAACCTACAATGGTTATAAGCTCAATGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAGATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGTTGCCAGGGCATTGGAAGCAGAGCTGATATTATGAAAGAAGTTGCTCGAAGGGAGAAGCAAGCTGGTATTGTCCCAGAACCAGACATTGACACTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTCTAATGACAGACTATATAATAAAGATCCTTGGGCTGGACATTTGTGCTGATACAATCGCAGGGGACGCAATGCAAACAGGAATTTCTGGTGGTCAAAAGAAAAGGCTTACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTTATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACATTTCAAATTGTAACTTGTCTGCAGCAATTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACTCCAGAGACTTTTCATCTGTTTGATGACATTATCTTGATGGCTGAAGGAAAAGTTGTATACCACGGGCCAAGTGACAATGTTGTGGAGTTCTTTCAGAAATGTGGTTTTTGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGCAAGAGTTCTTGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTACAGTTATGTTAGTATTGATAAGTTCGTAAATATGTTTAAGGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAGCTTTGCAAGCCTTTTGATCAATCTGTGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGAGAAACTCATTTATTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAGTAACAATGACAATGTTTCTACGTACATGGATGAAAGTCGACGAGATCCATGCAAAGTACTACATGGGTTCTTTGTTTTATGCTCTACTTAGACTGCTATGCAATGGAACTGCAGAGGTATCAATGACTGCCTCTAGACTAGCAGTCTTCTATAAGCAAAGAGATATCTACTTCTACCCTGCATGGGCTTATTCTATTCCGGCTGCCATCCTGAAAATTCCATTTTCATTGCTAGATGCATTTCTTTGGACAGCCCTTACTTATTATGTGATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTCTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGATCTGTCAGTCTTTTATCTTTAATAGTAATGTTTCTATTTGGAGGCTTCATAATTCCAAAATCTTCTCTACCTCCTTGGTTGGAATGGGGGTTTTGGGTTTCTCCGTTGGCATTTGCAGAAATAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTTACTATAGGCCAGCAAGCTTTAATTAACCGGGGTCTAAACTTCAGTGAATACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGGTTCACATGCGTACTCACTCCAGGGAGTTCTAGGACTATCATTTCTCATGAAAGATTCTCCCGTCTGAAGAATAAAGAAATTTTAGATAATTCCTGTCAAGAAAAAGAAGTAACTAGTGTAGACACTGACATTATTACTTCAGAATCTACAAATGCAGGCATGGTGTTGCCGTTTGAGCCCATAACTATATCATTTGAGAAAGTGAAATACTATATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAATTCTCACAGCTTTGATGGGAGTTAGTGGAGCCGGAAAAACGACACTGATGGATGTTCTTTCTGGAAGAAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTTCAAGAAACATATGCAAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCTCCACAGCTTACAGTAGAAGAGTCAGTAGCATACTCAGCTTGGTTACGCTTGCCATCCCAGATTGACAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCAACTGAACAGCGTAAAAGGCTAACAATTGCAGTGGAGCTTGTTTCAAATCCATCTGTTATATTCATGGACGAACCCACATCTGGTTTAGATGCCAGAGCAGCTGCAATAGTCATGCGAGTTGTGAAAAATATTGTCAGTACAAGGAGGACTGTTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCTTTCGATGAGCTTCTTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAACTGGGTCAAGATTCGAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAACTACAACCCAGCAACATGGATGTTAGAAGTCACGAGTCCTTCTGCAGAAGCCAAACTTGCCATAGATTTTGCTCAGCTTTATAGAGAATCACATTTATGCCAGAAGAACAATGACCTAGTTAGAGAAATCAGCTTTCCAGTAGAAGGCTCAAAGGAATTGAATTTTCCTACTCGCTTCCCGCAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTACTGGAGAAATCCAAAATATAACCTGGCGCGATTGTTAATCACTGCTGCATCCTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1207

Amino Acids

136.55

Weight (kDa)

8.17

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 355 1.2e-15 ABC transporter
ABC2_membrane PF01061 514 - 725 7.1e-43 ABC-2 type transporter
PDR_assoc PF08370 730 - 780 1.3e-15 Plant PDR ABC transporter associated
ABC_tran PF00005 865 - 1017 4.5e-19 ABC transporter
ABC2_membrane PF01061 1162 - 1202 8.2e-06 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AasI GACNNNNNNGTC 1 cut(s) 1436
Acc65I GGTACC 2 cut(s) 1368, 2736
AccB1I GGYRCC 2 cut(s) 1368, 2736
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 3 cut(s) 1230, 1674, 2442
AccII CGCG 1 cut(s) 3553
AciI CCGC 2 cut(s) 534, 3470
AclWI GGATC 4 cut(s) 925, 1359, 1675, 2038
AcsI RAATTY 8 cut(s) 385, 516, 987, 1851, 2171, 2400, 2625, 3451
AcuI CTGAAG 8 cut(s) 60, 519, 1148, 1236, 1921, 2239, 2408, 2445
AfaI GTAC 9 cut(s) 375, 1364, 1370, 1660, 1694, 2334, 2738, 2901, 3109
AfiI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 1819, 3050, 3434, 3476
AhdI GACNNNNNGTC 1 cut(s) 1778
AhlI ACTAGT 2 cut(s) 1633, 2435
AjnI CCWGG 7 cut(s) 252, 577, 777, 2341, 2620, 2950, 3546
Alw21I GWGCWC 2 cut(s) 74, 3595
Alw26I GTCTC 3 cut(s) 1172, 2712, 3506
AlwI GGATC 4 cut(s) 925, 1359, 1675, 2038
AlwNI CAGNNNCTG 2 cut(s) 2033, 2554
AoxI GGCC 5 cut(s) 876, 1036, 1075, 1238, 2221
ApeKI GCWGC 8 cut(s) 11, 121, 131, 1117, 1838, 3068, 3071, 3569
ApoI RAATTY 8 cut(s) 385, 516, 987, 1851, 2171, 2400, 2625, 3451
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2901
Asp718I GGTACC 2 cut(s) 1368, 2736
AspLEI GCGC 1 cut(s) 3553
AspS9I GGNCC 4 cut(s) 572, 1037, 1238, 2008
AsuC2I CCSGG 1 cut(s) 2243
AsuHPI GGTGA 1 cut(s) 1034
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 2 cut(s) 572, 2008
BanI GGYRCC 2 cut(s) 1368, 2736
BanII GRGCYC 1 cut(s) 2502
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BauI CACGAG 2 cut(s) 1961, 3322
BbsI GAAGAC 2 cut(s) 701, 1774
Bbv12I GWGCWC 2 cut(s) 74, 3595
BbvI GCAGC 7 cut(s) 108, 118, 1129, 1825, 3058, 3080, 3556
BccI CCATC 8 cut(s) 1204, 1850, 2299, 2635, 2668, 2863, 3028, 3474
BceAI ACGGC 1 cut(s) 2476
BcgI CGANNNNNNTGC 2 cut(s) 1667, 1701
BciT130I CCWGG 7 cut(s) 254, 579, 779, 2343, 2622, 2952, 3548
BclI TGATCA 1 cut(s) 1477
BcnI CCSGG 1 cut(s) 2243
BcoDI GTCTC 3 cut(s) 1172, 2712, 3506
BcuI ACTAGT 2 cut(s) 1633, 2435
BfmI CTRYAG 8 cut(s) 12, 122, 1115, 1387, 1746, 2217, 2585, 3333
BisI GCNGC 9 cut(s) 12, 122, 132, 535, 1118, 1839, 3069, 3072, 3570
BlpI GCTNAGC 1 cut(s) 3363
BlsI GCNGC 9 cut(s) 13, 123, 133, 536, 1119, 1840, 3070, 3073, 3571
BmcAI AGTACT 3 cut(s) 1364, 1694, 2901
Bme1390I CCNGG 8 cut(s) 254, 579, 779, 2243, 2343, 2622, 2952, 3548
Bme18I GGWCC 2 cut(s) 572, 2008
BmeRI GACNNNNNGTC 1 cut(s) 1778
BmgT120I GGNCC 4 cut(s) 572, 1037, 1238, 2008
BmiI GGNNCC 4 cut(s) 1370, 2656, 2738, 3273
BmrFI CCNGG 8 cut(s) 254, 579, 779, 2243, 2343, 2622, 2952, 3548
BmrI ACTGGG 1 cut(s) 3230
BmsI GCATC 8 cut(s) 65, 479, 546, 1861, 1975, 2009, 3049, 3581
BmuI ACTGGG 1 cut(s) 3230
BpiI GAAGAC 2 cut(s) 701, 1774
BpmI CTGGAG 4 cut(s) 561, 1158, 2325, 3547
Bpu1102I GCTNAGC 1 cut(s) 3363
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 269, 620
BpuMI CCSGG 1 cut(s) 2243
BsaAI YACGTR 1 cut(s) 1658
BsaXI ACNNNNNCTCC 2 cut(s) 3186, 3216
Bsc4I CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 1819, 3050, 3434, 3476
Bse1I ACTGG 7 cut(s) 762, 1370, 2611, 2704, 3225, 3428, 3530
Bse3DI GCAATG 4 cut(s) 981, 1626, 1744, 1862
BseBI CCWGG 7 cut(s) 254, 579, 779, 2343, 2622, 2952, 3548
BseLI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 1819, 3050, 3434, 3476
BseMI GCAATG 4 cut(s) 981, 1626, 1744, 1862
BseMII CTCAG 7 cut(s) 704, 726, 1517, 2546, 2850, 2874, 3377
BseNI ACTGG 7 cut(s) 762, 1370, 2611, 2704, 3225, 3428, 3530
BseRI GAGGAG 2 cut(s) 1472, 3207
BseXI GCAGC 7 cut(s) 108, 118, 1129, 1825, 3058, 3080, 3556
BseYI CCCAGC 2 cut(s) 1039, 3298
Bsh1236I CGCG 1 cut(s) 3553
BshFI GGCC 5 cut(s) 878, 1038, 1077, 1240, 2223
BshNI GGYRCC 2 cut(s) 1368, 2736
BsiHKAI GWGCWC 2 cut(s) 74, 3595
BsiSI CCGG 3 cut(s) 1835, 2242, 2658
BslFI GGGAC 3 cut(s) 363, 830, 983
BslI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 1819, 3050, 3434, 3476
BsmAI GTCTC 3 cut(s) 1172, 2712, 3506
BsmFI GGGAC 3 cut(s) 363, 830, 983
BsnI GGCC 5 cut(s) 878, 1038, 1077, 1240, 2223
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 3 cut(s) 74, 2502, 3595
Bsp143I GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
Bsp1720I GCTNAGC 1 cut(s) 3363
BspACI CCGC 2 cut(s) 534, 3470
BspANI GGCC 5 cut(s) 878, 1038, 1077, 1240, 2223
BspCNI CTCAG 7 cut(s) 703, 727, 1518, 2547, 2849, 2875, 3376
BspFNI CGCG 1 cut(s) 3553
BspHI TCATGA 4 cut(s) 205, 471, 1575, 2368
BspLI GGNNCC 4 cut(s) 1370, 2656, 2738, 3273
BspMAI CTGCAG 5 cut(s) 16, 126, 1119, 1750, 3337
BspPI GGATC 4 cut(s) 925, 1359, 1675, 2038
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 2 cut(s) 1368, 2736
BsrDI GCAATG 4 cut(s) 981, 1626, 1744, 1862
BsrI ACTGG 7 cut(s) 762, 1370, 2611, 2704, 3225, 3428, 3530
BssMI GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
BssNAI GTATAC 1 cut(s) 1231
BssSI CACGAG 2 cut(s) 1961, 3322
BssT1I CCWWGG 5 cut(s) 934, 2004, 2105, 2183, 2317
Bst1107I GTATAC 1 cut(s) 1231
Bst2BI CACGAG 2 cut(s) 1961, 3322
Bst2UI CCWGG 7 cut(s) 254, 579, 779, 2343, 2622, 2952, 3548
Bst4CI ACNGT 7 cut(s) 367, 745, 1391, 1916, 2815, 3121, 3212
Bst6I CTCTTC 3 cut(s) 1449, 1574, 2814
BstBAI YACGTR 1 cut(s) 1658
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 9 cut(s) 54, 834, 1469, 1552, 2225, 2229, 2479, 2783, 2852
BstDEI CTNAG 8 cut(s) 690, 735, 1526, 1724, 2555, 2836, 2883, 3363
BstDSI CCRYGG 1 cut(s) 1234
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstFNI CGCG 1 cut(s) 3553
BstHHI GCGC 1 cut(s) 3553
BstKTI GATC 6 cut(s) 205, 933, 1354, 1480, 1683, 2033
BstMAI GTCTC 3 cut(s) 1172, 2712, 3506
BstMBI GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
BstMWI GCNNNNNNNGC 9 cut(s) 789, 971, 1083, 1468, 2497, 2837, 2986, 3068, 3347
BstNI CCWGG 7 cut(s) 254, 579, 779, 2343, 2622, 2952, 3548
BstNSI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3501
BstSCI CCNGG 8 cut(s) 252, 577, 777, 2241, 2341, 2620, 2950, 3546
BstSFI CTRYAG 8 cut(s) 12, 122, 1115, 1387, 1746, 2217, 2585, 3333
BstSNI TACGTA 1 cut(s) 1658
BstUI CGCG 1 cut(s) 3553
BstV1I GCAGC 7 cut(s) 108, 118, 1129, 1825, 3058, 3080, 3556
BstV2I GAAGAC 2 cut(s) 701, 1774
BstX2I RGATCY 3 cut(s) 930, 1680, 2030
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1150, 3306
BstYI RGATCY 3 cut(s) 930, 1680, 2030
BstZ17I GTATAC 1 cut(s) 1231
BsuRI GGCC 5 cut(s) 878, 1038, 1077, 1240, 2223
BtgI CCRYGG 1 cut(s) 1234
BtsI GCAGTG 3 cut(s) 131, 3006, 3564
BtsIMutI CAGTG 8 cut(s) 131, 755, 1523, 2263, 2445, 2669, 3006, 3564
Cac8I GCNNGC 9 cut(s) 54, 834, 1469, 1552, 2225, 2229, 2479, 2783, 2852
CaiI CAGNNNCTG 2 cut(s) 2033, 2554
CciI TCATGA 4 cut(s) 205, 471, 1575, 2368
CfoI GCGC 1 cut(s) 3553
Cfr13I GGNCC 4 cut(s) 572, 1037, 1238, 2008
CseI GACGC 1 cut(s) 980
CsiI ACCWGGT 1 cut(s) 2950
Csp6I GTAC 9 cut(s) 374, 1363, 1369, 1659, 1693, 2333, 2737, 2900, 3108
CspCI CAANNNNNGTGG 2 cut(s) 2982, 3017
CviQI GTAC 9 cut(s) 374, 1363, 1369, 1659, 1693, 2333, 2737, 2900, 3108
DdeI CTNAG 8 cut(s) 690, 735, 1526, 1724, 2555, 2836, 2883, 3363
DpnI GATC 6 cut(s) 204, 932, 1353, 1479, 1682, 2032
DpnII GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
DraI TTTAAA 1 cut(s) 3493
DrdI GACNNNNNNGTC 1 cut(s) 1436
DriI GACNNNNNGTC 1 cut(s) 1778
DseDI GACNNNNNNGTC 1 cut(s) 1436
Eam1104I CTCTTC 3 cut(s) 1449, 1574, 2814
Eam1105I GACNNNNNGTC 1 cut(s) 1778
EarI CTCTTC 3 cut(s) 1449, 1574, 2814
Eco105I TACGTA 1 cut(s) 1658
Eco130I CCWWGG 5 cut(s) 934, 2004, 2105, 2183, 2317
Eco147I AGGCCT 1 cut(s) 1077
Eco24I GRGCYC 1 cut(s) 2502
Eco32I GATATC 3 cut(s) 1068, 1801, 2277
Eco47I GGWCC 2 cut(s) 572, 2008
Eco57I CTGAAG 8 cut(s) 60, 519, 1148, 1236, 1921, 2239, 2408, 2445
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoRI GAATTC 1 cut(s) 2625
EcoRII CCWGG 7 cut(s) 252, 577, 777, 2341, 2620, 2950, 3546
EcoRV GATATC 3 cut(s) 1068, 1801, 2277
EcoT14I CCWWGG 5 cut(s) 934, 2004, 2105, 2183, 2317
EcoT22I ATGCAT 2 cut(s) 58, 1876
EcoT38I GRGCYC 1 cut(s) 2502
ErhI CCWWGG 5 cut(s) 934, 2004, 2105, 2183, 2317
FalI AAGNNNNNCTT 8 cut(s) 1446, 1478, 1539, 1571, 2886, 2918, 3330, 3362
FaqI GGGAC 3 cut(s) 363, 830, 983
FauI CCCGC 1 cut(s) 3477
FauNDI CATATG 1 cut(s) 2758
FbaI TGATCA 1 cut(s) 1477
FblI GTMKAC 3 cut(s) 1230, 1674, 2442
Fnu4HI GCNGC 9 cut(s) 12, 122, 132, 535, 1118, 1839, 3069, 3072, 3570
FriOI GRGCYC 1 cut(s) 2502
Fsp4HI GCNGC 9 cut(s) 12, 122, 132, 535, 1118, 1839, 3069, 3072, 3570
GlaI GCGC 1 cut(s) 3552
GluI GCNGC 9 cut(s) 12, 122, 132, 535, 1118, 1839, 3069, 3072, 3570
GsaI CCCAGC 2 cut(s) 1043, 3302
GsuI CTGGAG 4 cut(s) 561, 1158, 2325, 3547
HaeIII GGCC 5 cut(s) 878, 1038, 1077, 1240, 2223
HapII CCGG 3 cut(s) 1835, 2242, 2658
HgaI GACGC 1 cut(s) 980
HhaI GCGC 1 cut(s) 3553
Hin6I GCGC 1 cut(s) 3551
HinP1I GCGC 1 cut(s) 3551
HincII GTYRAC 1 cut(s) 1675
HindII GTYRAC 1 cut(s) 1675
HindIII AAGCTT 4 cut(s) 1448, 2229, 3162, 3239
HinfI GANTC 9 cut(s) 559, 1126, 1139, 2376, 2465, 2822, 3230, 3325, 3377
HpaII CCGG 3 cut(s) 1835, 2242, 2658
HphI GGTGA 1 cut(s) 1034
Hpy166II GTNNAC 4 cut(s) 1231, 1675, 2325, 2443
Hpy8I GTNNAC 4 cut(s) 1231, 1675, 2325, 2443
Hpy99I CGWCG 3 cut(s) 203, 264, 1679
HpyCH4III ACNGT 7 cut(s) 367, 745, 1391, 1916, 2815, 3121, 3212
HpyCH4IV ACGT 3 cut(s) 160, 259, 1657
HpyF10VI GCNNNNNNNGC 9 cut(s) 789, 971, 1083, 1468, 2497, 2837, 2986, 3068, 3347
HpyF3I CTNAG 8 cut(s) 690, 735, 1526, 1724, 2555, 2836, 2883, 3363
HpySE526I ACGT 3 cut(s) 160, 259, 1657
HspAI GCGC 1 cut(s) 3551
KpnI GGTACC 2 cut(s) 1372, 2740
Ksp22I TGATCA 1 cut(s) 1477
Kzo9I GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
LmnI GCTCC 9 cut(s) 69, 1091, 1459, 2185, 2285, 2654, 3004, 3484, 3590
Lsp1109I GCAGC 7 cut(s) 108, 118, 1129, 1825, 3058, 3080, 3556
LweI GCATC 8 cut(s) 65, 479, 546, 1861, 1975, 2009, 3049, 3581
MabI ACCWGGT 1 cut(s) 2950
MaeII ACGT 3 cut(s) 160, 259, 1657
MalI GATC 6 cut(s) 204, 932, 1353, 1479, 1682, 2032
MboI GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
MfeI CAATTG 4 cut(s) 356, 885, 1121, 2994
MflI RGATCY 3 cut(s) 930, 1680, 2030
MhlI GDGCHC 3 cut(s) 74, 2502, 3595
MlyI GAGTC 4 cut(s) 553, 1120, 2831, 3334
MmeI TCCRAC 3 cut(s) 458, 1420, 2091
Mph1103I ATGCAT 2 cut(s) 58, 1876
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2901
MseI TTAA 7 cut(s) 327, 1425, 2051, 2234, 2238, 3492, 3560
MslI CAYNNNNRTG 4 cut(s) 51, 869, 1497, 3385
MspA1I CMGCKG 2 cut(s) 534, 3071
MspI CCGG 3 cut(s) 1835, 2242, 2658
MspR9I CCNGG 8 cut(s) 254, 579, 779, 2243, 2343, 2622, 2952, 3548
MunI CAATTG 4 cut(s) 356, 885, 1121, 2994
MvaI CCWGG 7 cut(s) 254, 579, 779, 2343, 2622, 2952, 3548
MvnI CGCG 1 cut(s) 3553
MwoI GCNNNNNNNGC 9 cut(s) 789, 971, 1083, 1468, 2497, 2837, 2986, 3068, 3347
NciI CCSGG 1 cut(s) 2243
NdeI CATATG 1 cut(s) 2758
NdeII GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
NlaIV GGNNCC 4 cut(s) 1370, 2656, 2738, 3273
NmuCI GTSAC 4 cut(s) 235, 1244, 2789, 3319
NsiI ATGCAT 2 cut(s) 58, 1876
NspI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3501
NspV TTCGAA 1 cut(s) 166
PacI TTAATTAA 1 cut(s) 2238
PaeI GCATGC 2 cut(s) 56, 1554
PagI TCATGA 4 cut(s) 205, 471, 1575, 2368
PceI AGGCCT 1 cut(s) 1077
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2901
PfeI GAWTC 5 cut(s) 1139, 2376, 2465, 3230, 3377
PflMI CCANNNNNTGG 1 cut(s) 584
PkrI GCNGC 9 cut(s) 13, 123, 133, 536, 1119, 1840, 3070, 3073, 3571
PleI GAGTC 4 cut(s) 553, 1120, 2830, 3333
PpsI GAGTC 4 cut(s) 553, 1120, 2830, 3333
Ppu21I YACGTR 1 cut(s) 1658
PsiI TTATAA 1 cut(s) 669
Psp6I CCWGG 7 cut(s) 252, 577, 777, 2341, 2620, 2950, 3546
PspFI CCCAGC 2 cut(s) 1039, 3298
PspGI CCWGG 7 cut(s) 252, 577, 777, 2341, 2620, 2950, 3546
PspN4I GGNNCC 4 cut(s) 1370, 2656, 2738, 3273
PspPI GGNCC 4 cut(s) 572, 1037, 1238, 2008
PstI CTGCAG 5 cut(s) 16, 126, 1119, 1750, 3337
PstNI CAGNNNCTG 2 cut(s) 2033, 2554
PsuI RGATCY 3 cut(s) 930, 1680, 2030
PvuII CAGCTG 1 cut(s) 3071
RsaI GTAC 9 cut(s) 375, 1364, 1370, 1660, 1694, 2334, 2738, 2901, 3109
RsaNI GTAC 9 cut(s) 374, 1363, 1369, 1659, 1693, 2333, 2737, 2900, 3108
RseI CAYNNNNRTG 4 cut(s) 51, 869, 1497, 3385
SalI GTCGAC 1 cut(s) 1673
SaqAI TTAA 7 cut(s) 327, 1425, 2051, 2234, 2238, 3492, 3560
SatI GCNGC 9 cut(s) 12, 122, 132, 535, 1118, 1839, 3069, 3072, 3570
Sau3AI GATC 6 cut(s) 202, 930, 1351, 1477, 1680, 2030
Sau96I GGNCC 4 cut(s) 572, 1037, 1238, 2008
ScaI AGTACT 3 cut(s) 1364, 1694, 2901
SchI GAGTC 4 cut(s) 553, 1120, 2831, 3334
ScrFI CCNGG 8 cut(s) 254, 579, 779, 2243, 2343, 2622, 2952, 3548
SduI GDGCHC 3 cut(s) 74, 2502, 3595
SexAI ACCWGGT 1 cut(s) 2950
SfaNI GCATC 8 cut(s) 65, 479, 546, 1861, 1975, 2009, 3049, 3581
SfcI CTRYAG 8 cut(s) 12, 122, 1115, 1387, 1746, 2217, 2585, 3333
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 2 cut(s) 572, 2008
SmiMI CAYNNNNRTG 4 cut(s) 51, 869, 1497, 3385
SmlI CTYRAG 2 cut(s) 284, 635
SmoI CTYRAG 2 cut(s) 284, 635
SnaBI TACGTA 1 cut(s) 1658
SpeI ACTAGT 2 cut(s) 1633, 2435
SphI GCATGC 2 cut(s) 56, 1554
SseBI AGGCCT 1 cut(s) 1077
SsiI CCGC 2 cut(s) 534, 3470
SspI AATATT 1 cut(s) 3100
StuI AGGCCT 1 cut(s) 1077
StyD4I CCNGG 8 cut(s) 252, 577, 777, 2241, 2341, 2620, 2950, 3546
StyI CCWWGG 5 cut(s) 934, 2004, 2105, 2183, 2317
TaaI ACNGT 7 cut(s) 367, 745, 1391, 1916, 2815, 3121, 3212
TaiI ACGT 3 cut(s) 163, 262, 1660
TaqI TCGA 6 cut(s) 166, 820, 1674, 2581, 3168, 3233
TatI WGTACW 4 cut(s) 1362, 1692, 2899, 3107
TauI GCSGC 1 cut(s) 537
TfiI GAWTC 5 cut(s) 1139, 2376, 2465, 3230, 3377
Tru1I TTAA 7 cut(s) 327, 1425, 2051, 2234, 2238, 3492, 3560
Tru9I TTAA 7 cut(s) 327, 1425, 2051, 2234, 2238, 3492, 3560
TscAI CASTG 8 cut(s) 131, 762, 1530, 2263, 2452, 2676, 3006, 3571
TseFI GTSAC 4 cut(s) 235, 1244, 2789, 3319
TseI GCWGC 8 cut(s) 11, 121, 131, 1117, 1838, 3068, 3071, 3569
Tsp45I GTSAC 4 cut(s) 235, 1244, 2789, 3319
TspGWI ACGGA 1 cut(s) 2124
TspRI CASTG 8 cut(s) 131, 762, 1530, 2263, 2452, 2676, 3006, 3571
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 2 cut(s) 572, 2008
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 8 cut(s) 385, 516, 987, 1851, 2171, 2400, 2625, 3451
XbaI TCTAGA 2 cut(s) 1559, 1769
XceI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3501
XmiI GTMKAC 3 cut(s) 1230, 1674, 2442
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2901
ZrmI AGTACT 3 cut(s) 1364, 1694, 2901
Zsp2I ATGCAT 2 cut(s) 58, 1876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.