Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000472

Physical Location & Seq

Genomic Coordinates Reverse (-)

50850172 .. 50860798

Gene Structure 10627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5829 bp

ATGGCTTCTTCTTCAGTCTCACTCTCCTTCTCTTCTTCTCTCCACTCTCATCCCCTCTCCCCCAACAAGAGCCCCACCGCTCACAGAGCCCAAGACCCCACCTTTAAACCGGCCCACTGCGCCTACGCAGCACCAGCTAAGAGCACTAGGTCTGCTAACTCTTCTTCTTCGTCTTCTCAGACCAGAAAGCGGCACTGGAAGCAAGGTGAATACCCAGGTGTTTCAGAGACGCCCATCCCCAGAAGGACGCCTCTCAAGAATGTCAAGAAGAAGCTTGACCGCAAGGACAAGGCCAAGGCTTGGGTCAACACCGTCACTGAAGAATTCTGTCACTCCATCGACAACAAGCAATGGCTCCGAGCCCTTGAGGTGTTTGAAATGCTTAAAGAGCAACCGTTTTATCAACCGAAAGAAGGGACTTACATGAGGCTCCTTCTTCTGCTCGGACGATCTGGCCAACCTCAGCGTGCCCAGAGTATTTTCGACGAAATGGTTGAAGAAGGGTGTCAACCAACTGCTGAACTGTACACAGCCCTGCTTACAGCTTACTGCAGGAGCAATCTTATTCATGACGCGTTTTCTGTTCTTAACCAGATGAAGACGTTCCCTCAGTGCCAGCCGGATGTTTTTACATACAGTACCTTGATAAAGGCTTGCATTGATAATTTGCAGTTTGAATTAGTTGAGTCTTTGTATGAAGAAATGGCTGCACGGTCAATCACTCCAAACACTGTCACCCAAAACGTAGTCCTGAGTGGATATGGTAAGGCTGGGATGTATGACCAGATGGAAAGAGTGTTGTCAGGAATGCTGGAGGGTGAAAGTTGCAAGCCTGATGTTTGGACGATGAATGTTATTCTTACTATTTTTGGTAACAAGGGTCAGATAGAGATGATGGAGAGATGGTATCAGAAATTCCGTGATTTTGGGATTGAGCCAGAAACTCGTACTTTTAATATTCTGATTAATGCTTATGGCAAGAAGAAATTGTATGATAAAATGTCAACTGTGATGGAGTACATGCGCAAGCTTCACTTTCCGTGGACCACTGCAACTTACAATAATGTTATTGAGGCTTTTGCGGATGTGGGAGATGCAAAAAACATGGAGTACACATTTGATCAGATGCGTGCTGAGGACATGAAAGCAGACACCAAAACATTCTGCTGCCTAATCAGAGGGTATGCCAATGCAGGTCTTTTCCATAAGGTGATTAGCACTGTTCAGTTGGCTGGAAAGTTTGAGATACCTGAAAATACCACATTTTATAATGCAGTGATATCGGCATGTGCAAAGGCAGATGATTTGATGGAGATGGAGAGAGTTTTTAACCGGATGAAAGAAAAGCAAGTCTCGCCAGATTCCTCGACATATGCCGTCATGGTTGAGGCATATAGAAAGGAAGGTATGAACGACAAGATCTACTATTTGGAGCAGGAGATTAGTGCTGATGCAGTGGACTCTGTCGTGACATTCCTGTTGGCAGCAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTTGCAGAGATTGGGAGAAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCGGTTGAGAGACTACCCACTTTTGAGAGGATCACATCAGCTTTGTTTGATGATCATGATGGCAAATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAACGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAGAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTACACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTCCTGACATCACTGAACTGGTAGGTTCAAAAAAACATGAAGCGAAGATAAGCATCATCAAAGATGTCAGTGGCATTATTAAGCCAGGAAGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCACTCTCAGGAAAGCTAAGCCATTCTCTCAAGGTTTCTGGCGAAATTAGTTACAATGGTTATAGACTTGAAGAATTTGTTCCGGAGAAAACCTCAGCCTATGTAGGCCAATATGATATGCATATTCCAGAGATCACTGTAAGGGAAACGCTAGATTTCTCTGCAGGCTGTCAAGGTGTAGGAAGCAGAGCCGAGATTATGATGGAAGTTAGTAGAAGAGAAAAGCAGGCAGGAATAGTCCCGGATTCTGATGTAGATGCTTACATGAAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGATACTTGGCCTTGATATATGTGATGACACGCTGGTTGGAGATCCCATAAGAAGAGGAATCTCTGGTGGTCAAAAGAAAAGGTTAACTACAGGGGAGATGATCGTTGGACCTGCAAAAGCTGTTTTCATGGATGAAATATCTAATGGCTTAGATAGTTCCACAACTTTCCAAATTGTTTCTTGTCTTCAACATTTTGTGCATATAACAGACGCTACATCATTGATCTCAATTCTTCAGCCTGCACCAGAGACGTTCAATCTCTTTGATGATGTTCTCTTAATGGCAGAAGGGAAGATTGTGTATCATGGACCAAGAACTTCTATCCTCCAATTTTTTGAGGAGTGTGGATTTAAGTGTCCAGAAAGAAAAGGTGTTGCTGACTTCCTTCAGGAGGTTATCTCTAGAAAAGATCAAGCACAGTTTTGGGACGGCACAGAAAAACCATATAGCTACTTTTCTGTTGATCAGTTCATTGAGAAATTCAAGGATTGCCATCTTGGCAGGAAGCTAGATGTGGATCTCTCAGAGCCATTCGATAAGTCTCAAAGCCACAAAGATGCTCTATCCTTTAAAAGATACTCATTACCTAAATGGGAGCTGTTTAAAGCATGCACAAGGAGGGAATTTCTTTTAATGAAAAGGAATTCTTTCATTTATGTTTTCAAATCAGTTCAGCTAGTCATCATTTCTTCTATAACGATGACTGTTTTCCTTCGAACTCAAATGGCTATTGACACGATCCATGCAAATTATTATATGGGCTCTTTGTTCTTTGCACTTGTGATACTTCTTGTTGATGGATTCCCAGAATTGTCAATGACTGTCTCAAGAATTGTGGTTTTCTACAAACAGAAAGAGTTGTGTTTTTACCCTGCTTGGGCTTATGCGATCCCAGCTGCCATCCTAAAGGTTCCACTTTCGCTCTTGGAGGCTTTTGTTTGGACTGCTCTTACATACTATGTTATTGGTTACAGCCCTGAGGTTGGAAGGTTCTTCCGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCGATATCCATGTTTCGGTTTATTGCTTCAGTTTTCCAAACTGCCGGTCCTTCTATGACAGCTGGTGTTTTATCAATATTGTTTGTTATGCTATTTGGTGGCTTTGTTATGCCAAAGCCTTATATGCCAGTTTGGTTGAAGTGGGGATTTTGGGTGTCTCCTTTGACATATGGAGAAATAGGCATAACAGTTAATGAATTTCTGGCACCTCGGTGGGAAAAGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTTGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCCCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTGGATGCAGAGGGAAAATCCACCGGTGAACCTGAGACTAATGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTTTGAGCATAACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTGTTCTGACAGCATTAATGGGTGTCAGCGGAGCTGGCAAAACAACTCTCATGGATGTTCTTTGTGGACGAAAAACCGGTGGTAAAATTGAAGGAGAAATAAGAATCAGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACTGTGGAAGAATCAGTAGTATATTCTGCTTGGTTGCGGCTCCCGTCTCAGATTGATTCAAAGACCAAAGCAGAATTTGTAAACGAGGTTCTTGAAACTATTGAACTTGATGGGATTAAAGATTCCTTGGTAGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGGGCGGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGCTGCAACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAATTGGAGGACGCATAATCTATTCTGGCCAACTTGGACGGCACTCAAGCATGGTTATTGAGTATCTTCAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATCTGCAGAAGCTGACCTTGGTGTAGATTTTGCACAAATTTATAGGGAATCGGCCTTGTATGAGAAGAACAAGGAGTTAGTCAAGCAAGCTAGTTCACCGTCTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACAGAATGGTTGGGGGCAGTTCAAAGTGTGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCGTATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTGTTGTTTGGAACACTGTACTGGAATCAAGGAGAGAAAATAAATAACCAGCAGGAGCTCTTCAATGTGTTTGGTTCAATGTTCGTGGCAATAATCTTCTTTGGCATTTACAATAGCACAACAGTTCTACCATTTGTTGCAACAGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTCTCTTCATGGGCCTATTCATTCGCACAGGTCCTGGTTGAGGTTCCCTACTCATTCAGTCAAGCAGTTCTTTATGTGGTCATCACATACCCGATGATTGGCTACCACTGGTCTGCCTATAAGATATTTTGGTCATTCTATAGCATGTTCTGCGTACTACTGTACTTCAACTACCTAGGGATGCTACTGGTGTCCTTGACACCAAATGTTCAAGTGGCTGCAATTGTGGCATCATCTTCCTACACAATGCTGAATTTGTTTTCAGGGTTCATTGTTCCGGGACCACAAATCCCAAAGTGGTGGCTCTGGCTGTATTATTTGTCTCCTACATCATGGGCACTGAACGGAATGCTTACTTCGCAGTATGGAGATGTGCAGAAAGAAATTGTGGTGTTTGGAGAGACGAAAACTGTTGCTGCTTTTTTAGAAGATTACTTTGGGTATCACCACAACCTGTTAGGCCTTGTCGCTGTTGTTCAGCTTCTCTTCCCCATTGTGTTTGCTTCTCTGTTTGCGTACTTCATTGGGAAACTAAACTTCCAAAAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0008150 GO:0008643 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0033231 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1942

Amino Acids

219.31

Weight (kDa)

7.17

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	159 - 222	2.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	168 - 200	6e-07	PPR repeat
PPR_2	PF13041	173 - 219	8.8e-12	PPR repeat family
PPR_2	PF13041	207 - 255	1.1e-09	PPR repeat family
PPR_2	PF13041	242 - 288	3.8e-06	PPR repeat family
PPR_2	PF13041	278 - 326	1.3e-07	PPR repeat family
PPR_2	PF13041	350 - 397	4e-06	PPR repeat family
PPR_2	PF13041	419 - 465	4.8e-10	PPR repeat family
PPR_3	PF13812	419 - 465	2.8e-06	Pentatricopeptide repeat domain
ABC_tran	PF00005	682 - 863	9.2e-17	ABC transporter
ABC2_membrane	PF01061	1017 - 1228	9.1e-42	ABC-2 type transporter
PDR_assoc	PF08370	1233 - 1291	3.4e-25	Plant PDR ABC transporter associated
ABC_tran	PF00005	1370 - 1522	2.3e-20	ABC transporter
ABC2_membrane	PF01061	1668 - 1881	4.6e-57	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca	FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica	MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica	Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis	pycom111g03460 pycom16g12210
rosa_chinensis	RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata	RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora	Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa	Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha	Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana	Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
Acc16I	TGCGCA	1 cut(s)	1025
Acc36I	ACCTGC	2 cut(s)	1184, 2569
AccB1I	GGYRCC	2 cut(s)	3688, 4786
AccB7I	CCANNNNNTGG	4 cut(s)	300, 1962, 4565, 4991
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	2 cut(s)	575, 3750
AccIII	TCCGGA	1 cut(s)	2209
AclWI	GGATC	7 cut(s)	1688, 2486, 2976, 3184, 3334, 5065, 5078
AcoI	YGGCCR	2 cut(s)	454, 4729
AcuI	CTGAAG	6 cut(s)	339, 1814, 2669, 2822, 3495, 4754
AcyI	GRCGYC	2 cut(s)	230, 248
AflIII	ACRYGT	1 cut(s)	573
AgeI	ACCGGT	2 cut(s)	3956, 4214
AjnI	CCWGG	7 cut(s)	214, 2068, 3859, 4135, 4780, 4948, 5310
AjuI	GAANNNNNNNTTGG	4 cut(s)	4845, 4877, 5697, 5729
AleI	CACNNNNGTG	1 cut(s)	3694
Alw21I	GWGCWC	3 cut(s)	146, 1774, 5154
AlwI	GGATC	7 cut(s)	1688, 2486, 2976, 3184, 3334, 5065, 5078
AlwNI	CAGNNNCTG	2 cut(s)	4856, 5311
Aor13HI	TCCGGA	1 cut(s)	2209
ArsI	GACNNNNNNTTYG	2 cut(s)	3514, 3546
AseI	ATTAAT	2 cut(s)	966, 4154
AsiGI	ACCGGT	2 cut(s)	3956, 4214
Asp700I	GAANNNNTTC	3 cut(s)	602, 2205, 3098
AspA2I	CCTAGG	1 cut(s)	5452
AspLEI	GCGC	2 cut(s)	122, 1026
AspS9I	GGNCC	9 cut(s)	112, 1044, 2093, 2558, 2759, 3530, 5289, 5308, 5558
AsuC2I	CCSGG	3 cut(s)	2100, 2369, 5556
AsuHPI	GGTGA	8 cut(s)	218, 727, 830, 1222, 3823, 3971, 4932, 5714
AsuII	TTCGAA	2 cut(s)	1555, 3166
AvaII	GGWCC	6 cut(s)	1044, 2558, 2759, 3530, 5308, 5558
AvrII	CCTAGG	1 cut(s)	5452
AxyI	CCTNAGG	2 cut(s)	3429, 4257
BaeGI	GKGCMC	3 cut(s)	472, 4791, 5617
BalI	TGGCCA	2 cut(s)	456, 4731
BamHI	GGATCC	1 cut(s)	5070
BanI	GGYRCC	2 cut(s)	3688, 4786
BanII	GRGCYC	7 cut(s)	74, 91, 364, 1774, 3215, 4017, 5154
BarI	GAAGNNNNNNTAC	2 cut(s)	1570, 1602
BbsI	GAAGAC	3 cut(s)	165, 605, 2627
Bbv12I	GWGCWC	3 cut(s)	146, 1774, 5154
BbvCI	CCTCAGC	3 cut(s)	462, 1134, 2221
BceAI	ACGGC	5 cut(s)	1361, 1796, 1957, 2896, 4757
BcgI	CGANNNNNNTGC	2 cut(s)	1263, 1297
BciT130I	CCWGG	7 cut(s)	216, 2070, 3861, 4137, 4782, 4950, 5312
BciVI	GTATCC	2 cut(s)	4263, 4787
BclI	TGATCA	3 cut(s)	1120, 1702, 2914
BcnI	CCSGG	3 cut(s)	2100, 2369, 5556
BfaI	CTAG	9 cut(s)	147, 1743, 2279, 2853, 2960, 3128, 4511, 4935, 5453
BfmI	CTRYAG	5 cut(s)	550, 2289, 2538, 4848, 5416
BfuAI	ACCTGC	2 cut(s)	1184, 2569
BfuI	GTATCC	2 cut(s)	4263, 4787
BglI	GCCNNNNNGGC	1 cut(s)	2949
BglII	AGATCT	1 cut(s)	1419
BlnI	CCTAGG	1 cut(s)	5452
BlpI	GCTNAGC	1 cut(s)	2144
Bme18I	GGWCC	6 cut(s)	1044, 2558, 2759, 3530, 5308, 5558
BmgT120I	GGNCC	9 cut(s)	112, 1044, 2093, 2558, 2759, 3530, 5289, 5308, 5558
BmiI	GGNNCC	9 cut(s)	356, 431, 3363, 3690, 4367, 4788, 5072, 5322, 5559
BpiI	GAAGAC	3 cut(s)	165, 605, 2627
BplI	GAGNNNNNCTC	4 cut(s)	2204, 2236, 2834, 2866
BpmI	CTGGAG	2 cut(s)	833, 4085
Bpu10I	CCTNAGC	3 cut(s)	462, 1134, 2221
Bpu1102I	GCTNAGC	1 cut(s)	2144
Bpu14I	TTCGAA	2 cut(s)	1555, 3166
BpuEI	CTTGAG	7 cut(s)	239, 386, 1552, 1758, 2141, 3262, 4732
BpuMI	CCSGG	3 cut(s)	2100, 2369, 5556
Bsa29I	ATCGAT	1 cut(s)	3485
BsaBI	GATNNNNATC	3 cut(s)	2036, 2943, 2967
BsaHI	GRCGYC	2 cut(s)	230, 248
BsaWI	WCCGGW	4 cut(s)	1332, 2209, 3956, 4214
BsaXI	ACNNNNNCTCC	2 cut(s)	890, 920
Bse118I	RCCGGY	4 cut(s)	109, 3527, 3956, 4214
Bse1I	ACTGG	6 cut(s)	200, 2007, 3611, 5120, 5390, 5469
Bse21I	CCTNAGG	2 cut(s)	3429, 4257
Bse3DI	GCAATG	2 cut(s)	356, 1649
Bse8I	GATNNNNATC	3 cut(s)	2036, 2943, 2967
BseAI	TCCGGA	1 cut(s)	2209
BseBI	CCWGG	7 cut(s)	216, 2070, 3861, 4137, 4782, 4950, 5312
BseCI	ATCGAT	1 cut(s)	3485
BseJI	GATNNNNATC	3 cut(s)	2036, 2943, 2967
BseMI	GCAATG	2 cut(s)	356, 1649
BseNI	ACTGG	6 cut(s)	200, 2007, 3611, 5120, 5390, 5469
BseRI	GAGGAG	1 cut(s)	2804
BseSI	GKGCMC	3 cut(s)	472, 4791, 5617
BseYI	CCCAGC	2 cut(s)	770, 3343
BsgI	GTGCAG	3 cut(s)	693, 2676, 5672
Bsh1236I	CGCG	2 cut(s)	575, 3750
BshNI	GGYRCC	2 cut(s)	3688, 4786
BshTI	ACCGGT	2 cut(s)	3956, 4214
BshVI	ATCGAT	1 cut(s)	3485
BsiHKAI	GWGCWC	3 cut(s)	146, 1774, 5154
BslFI	GGGAC	7 cut(s)	430, 1753, 2351, 2891, 3853, 5034, 5571
BsmBI	CGTCTC	6 cut(s)	221, 2693, 3912, 4377, 4950, 5672
BsmFI	GGGAC	7 cut(s)	430, 1753, 2351, 2891, 3853, 5034, 5571
BsmI	GAATGC	3 cut(s)	813, 4127, 5631
Bsp119I	TTCGAA	2 cut(s)	1555, 3166
Bsp13I	TCCGGA	1 cut(s)	2209
Bsp1407I	TGTACA	2 cut(s)	525, 4039
Bsp1720I	GCTNAGC	1 cut(s)	2144
BspDI	ATCGAT	1 cut(s)	3485
BspEI	TCCGGA	1 cut(s)	2209
BspFNI	CGCG	2 cut(s)	575, 3750
BspHI	TCATGA	3 cut(s)	568, 1705, 4698
BspLI	GGNNCC	9 cut(s)	356, 431, 3363, 3690, 4367, 4788, 5072, 5322, 5559
BspMAI	CTGCAG	3 cut(s)	554, 2293, 4852
BspMI	ACCTGC	2 cut(s)	1184, 2569
BspPI	GGATC	7 cut(s)	1688, 2486, 2976, 3184, 3334, 5065, 5078
BspQI	GCTCTTC	1 cut(s)	5159
BspT104I	TTCGAA	2 cut(s)	1555, 3166
BspT107I	GGYRCC	2 cut(s)	3688, 4786
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	356, 1649
BsrFI	RCCGGY	4 cut(s)	109, 3527, 3956, 4214
BsrGI	TGTACA	2 cut(s)	525, 4039
BsrI	ACTGG	6 cut(s)	200, 2007, 3611, 5120, 5390, 5469
BssAI	RCCGGY	4 cut(s)	109, 3527, 3956, 4214
BssNI	GRCGYC	2 cut(s)	230, 248
BssT1I	CCWWGG	5 cut(s)	294, 3834, 4452, 4861, 5452
Bst2UI	CCWGG	7 cut(s)	216, 2070, 3861, 4137, 4782, 4950, 5312
Bst6I	CTCTTC	7 cut(s)	37, 166, 2338, 2497, 5159, 5287, 5768
BstACI	GRCGYC	2 cut(s)	230, 248
BstAPI	GCANNNNNTGC	1 cut(s)	5427
BstAUI	TGTACA	2 cut(s)	525, 4039
BstBI	TTCGAA	2 cut(s)	1555, 3166
BstDSI	CCRYGG	2 cut(s)	1040, 3748
BstENI	CCTNNNNNAGG	2 cut(s)	2840, 5315
BstFNI	CGCG	2 cut(s)	575, 3750
BstHHI	GCGC	2 cut(s)	122, 1026
BstNI	CCWGG	7 cut(s)	216, 2070, 3861, 4137, 4782, 4950, 5312
BstNSI	RCATGY	4 cut(s)	1024, 1290, 3063, 5425
BstSFI	CTRYAG	5 cut(s)	550, 2289, 2538, 4848, 5416
BstSLI	GKGCMC	3 cut(s)	472, 4791, 5617
BstUI	CGCG	2 cut(s)	575, 3750
BstV2I	GAAGAC	3 cut(s)	165, 605, 2627
BstX2I	RGATCY	4 cut(s)	1419, 2491, 2968, 5070
BstXI	CCANNNNNNTGG	1 cut(s)	5577
BstYI	RGATCY	4 cut(s)	1419, 2491, 2968, 5070
Bsu15I	ATCGAT	1 cut(s)	3485
Bsu36I	CCTNAGG	2 cut(s)	3429, 4257
BsuI	GTATCC	2 cut(s)	4263, 4787
BsuTUI	ATCGAT	1 cut(s)	3485
BtgI	CCRYGG	2 cut(s)	1040, 3748
BtsI	GCAGTG	5 cut(s)	115, 1047, 1281, 1461, 4611
BveI	ACCTGC	2 cut(s)	1184, 2569
CaiI	CAGNNNCTG	2 cut(s)	4856, 5311
CciI	TCATGA	3 cut(s)	568, 1705, 4698
CfoI	GCGC	2 cut(s)	122, 1026
Cfr10I	RCCGGY	4 cut(s)	109, 3527, 3956, 4214
Cfr13I	GGNCC	9 cut(s)	112, 1044, 2093, 2558, 2759, 3530, 5289, 5308, 5558
Cfr42I	CCGCGG	1 cut(s)	3751
ClaI	ATCGAT	1 cut(s)	3485
CseI	GACGC	5 cut(s)	238, 256, 581, 2669, 4722
CspAI	ACCGGT	2 cut(s)	3956, 4214
CspCI	CAANNNNNGTGG	4 cut(s)	3267, 3302, 5160, 5195
DraI	TTTAAA	3 cut(s)	106, 3022, 3055
EaeI	YGGCCR	2 cut(s)	454, 4729
Eam1104I	CTCTTC	7 cut(s)	37, 166, 2338, 2497, 5159, 5287, 5768
EarI	CTCTTC	7 cut(s)	37, 166, 2338, 2497, 5159, 5287, 5768
EciI	GGCGGA	1 cut(s)	3437
Ecl136II	GAGCTC	2 cut(s)	1772, 5152
Eco130I	CCWWGG	5 cut(s)	294, 3834, 4452, 4861, 5452
Eco147I	AGGCCT	1 cut(s)	5739
Eco24I	GRGCYC	7 cut(s)	74, 91, 364, 1774, 3215, 4017, 5154
Eco32I	GATATC	4 cut(s)	1281, 3489, 3783, 4284
Eco47I	GGWCC	6 cut(s)	1044, 2558, 2759, 3530, 5308, 5558
Eco53kI	GAGCTC	2 cut(s)	1772, 5152
Eco57I	CTGAAG	6 cut(s)	339, 1814, 2669, 2822, 3495, 4754
Eco81I	CCTNAGG	2 cut(s)	3429, 4257
EcoICRI	GAGCTC	2 cut(s)	1772, 5152
EcoNI	CCTNNNNNAGG	2 cut(s)	2840, 5315
EcoO109I	RGGNCCY	1 cut(s)	5308
EcoRI	GAATTC	3 cut(s)	323, 1966, 3094
EcoRII	CCWGG	7 cut(s)	214, 2068, 3859, 4135, 4780, 4948, 5310
EcoRV	GATATC	4 cut(s)	1281, 3489, 3783, 4284
EcoT14I	CCWWGG	5 cut(s)	294, 3834, 4452, 4861, 5452
EcoT22I	ATGCAT	1 cut(s)	2250
EcoT38I	GRGCYC	7 cut(s)	74, 91, 364, 1774, 3215, 4017, 5154
ErhI	CCWWGG	5 cut(s)	294, 3834, 4452, 4861, 5452
Esp3I	CGTCTC	6 cut(s)	221, 2693, 3912, 4377, 4950, 5672
FaqI	GGGAC	7 cut(s)	430, 1753, 2351, 2891, 3853, 5034, 5571
FauI	CCCGC	1 cut(s)	4985
FauNDI	CATATG	2 cut(s)	1372, 3652
FbaI	TGATCA	3 cut(s)	1120, 1702, 2914
FriOI	GRGCYC	7 cut(s)	74, 91, 364, 1774, 3215, 4017, 5154
FspBI	CTAG	9 cut(s)	147, 1743, 2279, 2853, 2960, 3128, 4511, 4935, 5453
FspI	TGCGCA	1 cut(s)	1025
GlaI	GCGC	2 cut(s)	121, 1025
GsaI	CCCAGC	2 cut(s)	774, 3347
GsuI	CTGGAG	2 cut(s)	833, 4085
HgaI	GACGC	5 cut(s)	238, 256, 581, 2669, 4722
HhaI	GCGC	2 cut(s)	122, 1026
Hin1I	GRCGYC	2 cut(s)	230, 248
Hin6I	GCGC	2 cut(s)	120, 1024
HinP1I	GCGC	2 cut(s)	120, 1024
HincII	GTYRAC	6 cut(s)	307, 509, 1005, 2535, 4054, 4506
HindII	GTYRAC	6 cut(s)	307, 509, 1005, 2535, 4054, 4506
HindIII	AAGCTT	2 cut(s)	272, 1028
HpaI	GTTAAC	1 cut(s)	2535
HphI	GGTGA	8 cut(s)	218, 727, 830, 1222, 3823, 3971, 4932, 5714
Hpy99I	CGWCG	1 cut(s)	488
HpyCH4IV	ACGT	4 cut(s)	602, 744, 2702, 4495
HpySE526I	ACGT	4 cut(s)	602, 744, 2702, 4495
Hsp92I	GRCGYC	2 cut(s)	230, 248
HspAI	GCGC	2 cut(s)	120, 1024
Kpn2I	TCCGGA	1 cut(s)	2209
Ksp22I	TGATCA	3 cut(s)	1120, 1702, 2914
KspAI	GTTAAC	1 cut(s)	2535
KspI	CCGCGG	1 cut(s)	3751
LguI	GCTCTTC	1 cut(s)	5159
MaeI	CTAG	9 cut(s)	147, 1743, 2279, 2853, 2960, 3128, 4511, 4935, 5453
MaeII	ACGT	4 cut(s)	602, 744, 2702, 4495
MbiI	CCGCTC	1 cut(s)	80
MfeI	CAATTG	1 cut(s)	5499
MflI	RGATCY	4 cut(s)	1419, 2491, 2968, 5070
MlsI	TGGCCA	2 cut(s)	456, 4731
MluI	ACGCGT	1 cut(s)	573
MluNI	TGGCCA	2 cut(s)	456, 4731
MlyI	GAGTC	3 cut(s)	695, 1454, 1511
MmeI	TCCRAC	3 cut(s)	2467, 2536, 3415
Mox20I	TGGCCA	2 cut(s)	456, 4731
Mph1103I	ATGCAT	1 cut(s)	2250
MroI	TCCGGA	1 cut(s)	2209
MroXI	GAANNNNTTC	3 cut(s)	602, 2205, 3098
MscI	TGGCCA	2 cut(s)	456, 4731
MslI	CAYNNNNRTG	4 cut(s)	3006, 3694, 3762, 4547
Msp20I	TGGCCA	2 cut(s)	456, 4731
MspA1I	CMGCKG	6 cut(s)	1834, 3347, 3545, 3750, 4167, 5093
MunI	CAATTG	1 cut(s)	5499
Mva1269I	GAATGC	3 cut(s)	813, 4127, 5631
MvaI	CCWGG	7 cut(s)	216, 2070, 3861, 4137, 4782, 4950, 5312
MvnI	CGCG	2 cut(s)	575, 3750
NciI	CCSGG	3 cut(s)	2100, 2369, 5556
NdeI	CATATG	2 cut(s)	1372, 3652
NlaIV	GGNNCC	9 cut(s)	356, 431, 3363, 3690, 4367, 4788, 5072, 5322, 5559
NmeAIII	GCCGAG	1 cut(s)	2344
NmuCI	GTSAC	4 cut(s)	313, 329, 733, 1468
NsbI	TGCGCA	1 cut(s)	1025
NsiI	ATGCAT	1 cut(s)	2250
NspI	RCATGY	4 cut(s)	1024, 1290, 3063, 5425
NspV	TTCGAA	2 cut(s)	1555, 3166
OliI	CACNNNNGTG	1 cut(s)	3694
PaeI	GCATGC	1 cut(s)	3063
PagI	TCATGA	3 cut(s)	568, 1705, 4698
PasI	CCCWGGG	1 cut(s)	4781
PceI	AGGCCT	1 cut(s)	5739
PciSI	GCTCTTC	1 cut(s)	5159
PctI	GAATGC	3 cut(s)	813, 4127, 5631
PdmI	GAANNNNTTC	3 cut(s)	602, 2205, 3098
PflFI	GACNNNGTC	1 cut(s)	1463
PflMI	CCANNNNNTGG	4 cut(s)	300, 1962, 4565, 4991
PfoI	TCCNGGA	3 cut(s)	2367, 3859, 5554
PinAI	ACCGGT	2 cut(s)	3956, 4214
PleI	GAGTC	3 cut(s)	694, 1454, 1510
PpsI	GAGTC	3 cut(s)	694, 1454, 1510
PpuMI	RGGWCCY	1 cut(s)	5308
PshBI	ATTAAT	2 cut(s)	966, 4154
PsiI	TTATAA	1 cut(s)	1269
Psp124BI	GAGCTC	2 cut(s)	1774, 5154
Psp5II	RGGWCCY	1 cut(s)	5308
Psp6I	CCWGG	7 cut(s)	214, 2068, 3859, 4135, 4780, 4948, 5310
PspFI	CCCAGC	2 cut(s)	770, 3343
PspGI	CCWGG	7 cut(s)	214, 2068, 3859, 4135, 4780, 4948, 5310
PspN4I	GGNNCC	9 cut(s)	356, 431, 3363, 3690, 4367, 4788, 5072, 5322, 5559
PspPI	GGNCC	9 cut(s)	112, 1044, 2093, 2558, 2759, 3530, 5289, 5308, 5558
PspPPI	RGGWCCY	1 cut(s)	5308
PsrI	GAACNNNNNNTAC	2 cut(s)	4398, 4430
PstI	CTGCAG	3 cut(s)	554, 2293, 4852
PstNI	CAGNNNCTG	2 cut(s)	4856, 5311
PsuI	RGATCY	4 cut(s)	1419, 2491, 2968, 5070
PsyI	GACNNNGTC	1 cut(s)	1463
PvuII	CAGCTG	4 cut(s)	1834, 3347, 3545, 5093
RseI	CAYNNNNRTG	4 cut(s)	3006, 3694, 3762, 4547
SacI	GAGCTC	2 cut(s)	1774, 5154
SacII	CCGCGG	1 cut(s)	3751
SapI	GCTCTTC	1 cut(s)	5159
Sau96I	GGNCC	9 cut(s)	112, 1044, 2093, 2558, 2759, 3530, 5289, 5308, 5558
SchI	GAGTC	3 cut(s)	695, 1454, 1511
SfcI	CTRYAG	5 cut(s)	550, 2289, 2538, 4848, 5416
Sfr303I	CCGCGG	1 cut(s)	3751
SfuI	TTCGAA	2 cut(s)	1555, 3166
SgrAI	CRCCGGYG	1 cut(s)	3956
SgrBI	CCGCGG	1 cut(s)	3751
SinI	GGWCC	6 cut(s)	1044, 2558, 2759, 3530, 5308, 5558
SmiMI	CAYNNNNRTG	4 cut(s)	3006, 3694, 3762, 4547
SmlI	CTYRAG	7 cut(s)	254, 365, 1567, 1773, 2156, 3277, 4747
SmoI	CTYRAG	7 cut(s)	254, 365, 1567, 1773, 2156, 3277, 4747
SphI	GCATGC	1 cut(s)	3063
SseBI	AGGCCT	1 cut(s)	5739
SspI	AATATT	4 cut(s)	958, 1631, 3561, 3823
SspMI	CTAG	9 cut(s)	147, 1743, 2279, 2853, 2960, 3128, 4511, 4935, 5453
SstI	GAGCTC	2 cut(s)	1774, 5154
StuI	AGGCCT	1 cut(s)	5739
StyI	CCWWGG	5 cut(s)	294, 3834, 4452, 4861, 5452
TaiI	ACGT	4 cut(s)	605, 747, 2705, 4498
TaqI	TCGA	9 cut(s)	339, 483, 1367, 1555, 2985, 3166, 3485, 3762, 5257
TatI	WGTACW	8 cut(s)	525, 1017, 1110, 1936, 2423, 4039, 5112, 5439
TauI	GCSGC	4 cut(s)	193, 3750, 4366, 4586
TseFI	GTSAC	4 cut(s)	313, 329, 733, 1468
Tsp45I	GTSAC	4 cut(s)	313, 329, 733, 1468
TspGWI	ACGGA	5 cut(s)	908, 1029, 5083, 5257, 5637
Tth111I	GACNNNGTC	1 cut(s)	1463
Van91I	CCANNNNNTGG	4 cut(s)	300, 1962, 4565, 4991
VpaK11BI	GGWCC	6 cut(s)	1044, 2558, 2759, 3530, 5308, 5558
VspI	ATTAAT	2 cut(s)	966, 4154
XagI	CCTNNNNNAGG	2 cut(s)	2840, 5315
XbaI	TCTAGA	1 cut(s)	2852
XceI	RCATGY	4 cut(s)	1024, 1290, 3063, 5425
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2122, 4992
XmaJI	CCTAGG	1 cut(s)	5452
XmnI	GAANNNNTTC	3 cut(s)	602, 2205, 3098
XspI	CTAG	9 cut(s)	147, 1743, 2279, 2853, 2960, 3128, 4511, 4935, 5453
Zsp2I	ATGCAT	1 cut(s)	2250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.