Rmu_sc0000648.1_g000009

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000648.1
OG0000472
Physical Location & Seq
Forward (+)
43464 .. 51300
7837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000648.1_g000009.1.cds

Sequence Viewer

Length: 3762 bp
atggacttggctgcagagataggaagaagtgtcaggacctcgtttcgtgagcatgcatcgagtttcaggagcactgcagatgtaaggtccataaagaagaatgaagacgatgaagtagagctgcagtgggccgccattgagaggttgccaacgtttgagcgcattaggacttcattgtttgattgcagcaaagatgagaaggaagatgaggctagtaacaagagtaagatggcacagattgatgtgtcgaagctaggatcaatggagaggcatgtggtcattcagaagttgatcaaggaaattgagggagataaccaccggctcttgcagaaactcagagaaagaatagacagagtaggactgcaactgccgactgtggaagttcgataccagaatttgttagtagaagcagaatatgaagtagttcaaggaaaacctctccctacactatggaacaccgttaaaagcttattctctgtccggggaaatgtaacctacaatggttataagctcaatgagtttgttccacagaagacatcagcttatataagtcaatatgacttgcacatttctgaaatgactgtgagggaagcactggatttcgcagcacgctgtcagggtattggaagcagagcaggtgccctattttcttcacatcttatggccatagtcatattccataaaactagatttaacttggaagctgttgcaacaacagatataatgaaagaagtcaccagaagggagaagcaagaaggaattgtcccagattcagatattgatacttatatgaagatccttgggctagacatgtgtgctgagacaattgtaggagatccaatgcaaagaggaatttcgggtggccaaaagaaaagactaacaacaggggaaatgatgattggtccagcaagagctttctttatggacgagatatcaacaggcttagacagttccaccaccttccaaatcgtcacttgtcttcagcaattgactcacctaacagaatccaccatcttggtttcacttcttcagccaacacctgagacctttcatctgtttgatgacattattttgatggcagaaggaaaagttgtataccatgggcctagtgataatgtggtggtttcccaaaaggatcaagaaaagtactggtacgatgaagaccaaccccatagttatgttactgtcgacaactttgtagatatgttcaaggacttccatgttggaaagaaactcgatgaggaacttcaggagcctttcaatcgatctgagttccataaagatgctttgtcatttaacatttactcattgacaaaatgggaactcttcaaagcatgccttgctagagaatggcttctgatgaagcgcaactcgtttgtccatgtattcaaatcagcacagcttgtggtcattgcgctagtaacaatgacagtgtttcttcgtacgtggatgaaagtcgatgagatccattcaaatttctttatgagttctttgttctatgctctacttagattggtgtgcaatggcactgcagagctatcattgactgcttccagacttgcagtgttttacaagcaaagagacttttatttctatcctgcgtgggcttattcggttccatctgccattctaaagattccattttcattgatagacgcttttctatggacagcacttacttattatgtcatcggttacagtcctgaacccgagagtcaatcttataagctctttcctgttgcagcttctctacctagctggctggaatggggcttttggctttccccattgctctcatcttcaaatatcacaataggtcagcaagctctaaaagacagtggtcttgatttcagtgaatacttctattggatatctataggagctttacttggattttggttggttttcaacctaggtttcacctgtgctctcagttatttaaagtgggtcttaccttttgaacccttgactatatcatttgagaaggtgcaatattttgtcgacttaccccagaaactgagagagcaaggtgttccaccaaaacgactacaacttcttcaagatataactggtgcatttagacctggagttcttacagcacttatgggtgttagtggagctggaaagacaacactgatggatgttctttcaggaaggaaaactggtggaattattgaaggagacattagaattggaggacacccaaaagtccaagaaacatatgccagaatatctgggtattgcgagcaaagtgacatacattccccacagataacagtagaagagtcggtaacatactcagcttggttacgtttgccagcacaggttgatagaacagtcagatctgaatttgtgagagaagttctacaaatgatcgagcttgatgaaatcaaggacgaactagtaggcgtacctggtaggggtatatcgactgaacagcgcaaacggcttactatagcagtggagcttgtttcaaatccatccataatgttcatggatgaacccacctctggtttagatgccagagcagctgcaatagttatgcgagtggtcaaaaacattgtcagcactaggaggactgttgtatgcaccattcaccagcccagtattgacatctttgaagcattcgatgagggtattcctggggttccaaacatcaaagaaaattacaaccccgcaacatggatgttagaggtcaccggtccttctgcagaagctaaacttggcttagattttgctcaactctatagagagtcacatctatgccgggagaacgatgacctagttagagaactcagctgtccagcagaaggggcaaagaaactacatttttctactcgctttgcacaaaatgaatgggagcaatttaaagcctgcctctggaagcaacatctctcctactggagaaatccacaatataacctgggcagattgacaattactgctgcatcctctttgttattcggagcacttctttggcagaaagggcagacagtagataatgaacaggattttttcaacattctgggatcaatgtttgttttactgcaattcatgggaataggaaactgctcctctgttttaccctgtattgcttcagagcggaatgttgtatacagagaaaggtttgctggaatgtactcctcatgggcctattcatttgcgcaggtgatcattgaaattccatacatatttcttcaggcagttttgtttttggcaatcacatatccaaccataaatttccactggacactttaccaagtgttttggtatgtctatgccatgttttgtacactgctctacttcagttacttcggcatattgcttgcagctttgaccccaacattcccagtggctatggtcctagccagtttctgttacaccatgttcaacttattctcaggtttcctcgtgcctggaccgaaaattcctaaatggtgggtttggggttattggatttgccctgtagcatggtccttaaacggtcttctcacttcacagtatggagatctaaacaaggtaatagtagtacatggggaggaaaagaccatcagtgacttcttagaaagctctggaagaagggtactattggttatggtcgaagaacaagggctgaaggaggaagaggtagaagaactgaagaagtcggccgaaaccaaaaaacataggactgaagaagatcattacaatggtatggcccattttctttctatgaacattgtaattgggcctagttttatcggtcccttctcaaacccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1253

Amino Acids

142.78

Weight (kDa)

5.67

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 507, 1725
AarI CACCTGC 2 cut(s) 626, 3157
Acc16I TGCGCA 1 cut(s) 3165
Acc36I ACCTGC 2 cut(s) 626, 3157
AccB1I GGYRCC 1 cut(s) 638
AccBSI CCGCTC 1 cut(s) 3103
AccI GTMKAC 4 cut(s) 1095, 1188, 2001, 3114
AciI CCGC 3 cut(s) 132, 2676, 3103
AclI AACGTT 1 cut(s) 152
AclWI GGATC 6 cut(s) 265, 790, 830, 1143, 1459, 3037
AcoI YGGCCR 3 cut(s) 663, 862, 3648
AcsI RAATTY 7 cut(s) 394, 852, 1474, 2348, 3180, 3238, 3426
AcuI CTGAAG 9 cut(s) 965, 1013, 1232, 3081, 3182, 3289, 3635, 3659, 3693
AfaI GTAC 8 cut(s) 1148, 1154, 1444, 2412, 3140, 3292, 3531, 3585
AfiI CCNNNNNNNGG 6 cut(s) 141, 2420, 2510, 2682, 2810, 2880
AflIII ACRYGT 1 cut(s) 810
AgeI ACCGGT 1 cut(s) 2699
AhlI ACTAGT 1 cut(s) 2401
AjnI CCWGG 5 cut(s) 2083, 2413, 2641, 2922, 3415
AjuI GAANNNNNNNTTGG 4 cut(s) 882, 914, 2706, 2738
Alw21I GWGCWC 3 cut(s) 74, 1930, 2971
Alw26I GTCTC 4 cut(s) 815, 1037, 1575, 2175
AlwI GGATC 6 cut(s) 265, 790, 830, 1143, 1459, 3037
AlwNI CAGNNNCTG 2 cut(s) 2017, 3375
Ama87I CYCGRG 1 cut(s) 1709
AoxI GGCC 8 cut(s) 129, 663, 862, 1103, 3150, 3648, 3696, 3728
ApeKI GCWGC 9 cut(s) 11, 121, 186, 605, 1742, 2528, 2531, 2945, 3329
ApoI RAATTY 7 cut(s) 394, 852, 1474, 2348, 3180, 3238, 3426
ArsI GACNNNNNNTTYG 2 cut(s) 2547, 2579
AsiGI ACCGGT 1 cut(s) 2699
Asp700I GAANNNNTTC 2 cut(s) 423, 1353
AspA2I CCTAGG 1 cut(s) 1912
AspLEI GCGC 5 cut(s) 162, 1368, 1417, 2442, 3166
AsuC2I CCSGG 2 cut(s) 482, 2768
AsuHPI GGTGA 6 cut(s) 727, 986, 1912, 2588, 2689, 3181
AvaI CYCGRG 1 cut(s) 1709
AvaII GGWCC 8 cut(s) 36, 87, 902, 2702, 3361, 3419, 3474, 3743
AvrII CCTAGG 1 cut(s) 1912
BaeGI GKGCMC 1 cut(s) 643
BalI TGGCCA 2 cut(s) 665, 864
BanI GGYRCC 1 cut(s) 638
BauI CACGAG 1 cut(s) 3410
BbsI GAAGAC 5 cut(s) 111, 539, 971, 1167, 3479
Bbv12I GWGCWC 3 cut(s) 74, 1930, 2971
BbvI GCAGC 8 cut(s) 108, 198, 617, 1754, 2518, 2540, 2932, 3341
BccI CCATC 7 cut(s) 223, 1019, 1069, 1627, 2131, 2488, 3557
BceAI ACGGC 1 cut(s) 2462
BciT130I CCWGG 5 cut(s) 2085, 2415, 2643, 2924, 3417
BclI TGATCA 2 cut(s) 291, 3171
BcnI CCSGG 2 cut(s) 482, 2768
BcoDI GTCTC 4 cut(s) 815, 1037, 1575, 2175
BcuI ACTAGT 1 cut(s) 2401
BfmI CTRYAG 9 cut(s) 12, 75, 122, 1530, 1875, 2454, 2709, 2746, 3465
BfuAI ACCTGC 2 cut(s) 626, 3157
BglII AGATCT 2 cut(s) 2342, 3508
BlnI CCTAGG 1 cut(s) 1912
BmcAI AGTACT 1 cut(s) 1148
Bme1390I CCNGG 7 cut(s) 482, 2085, 2415, 2643, 2768, 2924, 3417
Bme18I GGWCC 8 cut(s) 36, 87, 902, 2702, 3361, 3419, 3474, 3743
BmeT110I CYCGRG 1 cut(s) 1709
BmiI GGNNCC 5 cut(s) 640, 1254, 1617, 2649, 3745
BmrFI CCNGG 7 cut(s) 482, 2085, 2415, 2643, 2768, 2924, 3417
BmrI ACTGGG 2 cut(s) 2598, 3344
BmsI GCATC 4 cut(s) 65, 1273, 2509, 2957
BmuI ACTGGG 2 cut(s) 2598, 3344
BoxI GACNNNNGTC 1 cut(s) 1839
BpiI GAAGAC 5 cut(s) 111, 539, 971, 1167, 3479
BpmI CTGGAG 2 cut(s) 2106, 2923
BpuMI CCSGG 2 cut(s) 482, 2768
Bsa29I ATCGAT 1 cut(s) 1264
BsaAI YACGTR 1 cut(s) 1446
BsaI GGTCTC 1 cut(s) 1037
BsaJI CCNNGG 6 cut(s) 481, 799, 1099, 1912, 2642, 2923
BsaWI WCCGGW 1 cut(s) 2699
Bsc4I CCNNNNNNNGG 6 cut(s) 141, 2420, 2510, 2682, 2810, 2880
Bse118I RCCGGY 2 cut(s) 318, 2699
Bse1I ACTGG 9 cut(s) 600, 1154, 2074, 2167, 2604, 2906, 3251, 3350, 3369
Bse3DI GCAATG 3 cut(s) 1410, 1528, 1787
BseBI CCWGG 5 cut(s) 2085, 2415, 2643, 2924, 3417
BseCI ATCGAT 1 cut(s) 1264
BseDI CCNNGG 6 cut(s) 481, 799, 1099, 1912, 2642, 2923
BseGI GGATG 6 cut(s) 1455, 2146, 2480, 2503, 2691, 2948
BseLI CCNNNNNNNGG 6 cut(s) 141, 2420, 2510, 2682, 2810, 2880
BseMI GCAATG 3 cut(s) 1410, 1528, 1787
BseMII CTCAG 9 cut(s) 349, 810, 1032, 1260, 1945, 2009, 2313, 2809, 3414
BseNI ACTGG 9 cut(s) 600, 1154, 2074, 2167, 2604, 2906, 3251, 3350, 3369
BseRI GAGGAG 2 cut(s) 3064, 3133
BseSI GKGCMC 1 cut(s) 643
BseX3I CGGCCG 1 cut(s) 3648
BseXI GCAGC 8 cut(s) 108, 198, 617, 1754, 2518, 2540, 2932, 3341
Bsh1285I CGRYCG 1 cut(s) 3651
BshFI GGCC 8 cut(s) 131, 665, 864, 1105, 3152, 3650, 3698, 3730
BshNI GGYRCC 1 cut(s) 638
BshTI ACCGGT 1 cut(s) 2699
BshVI ATCGAT 1 cut(s) 1264
BsiEI CGRYCG 1 cut(s) 3651
BsiHKAI GWGCWC 3 cut(s) 74, 1930, 2971
BsiHKCI CYCGRG 1 cut(s) 1709
BsiSI CCGG 4 cut(s) 319, 481, 2700, 2767
BsiWI CGTACG 1 cut(s) 1442
BslFI GGGAC 2 cut(s) 749, 3729
BslI CCNNNNNNNGG 6 cut(s) 141, 2420, 2510, 2682, 2810, 2880
BsmAI GTCTC 4 cut(s) 815, 1037, 1575, 2175
BsmFI GGGAC 2 cut(s) 749, 3729
BsmI GAATGC 1 cut(s) 2624
BsnI GGCC 8 cut(s) 131, 665, 864, 1105, 3152, 3650, 3698, 3730
Bso31I GGTCTC 1 cut(s) 1037
BsoBI CYCGRG 1 cut(s) 1709
Bsp1286I GDGCHC 4 cut(s) 74, 643, 1930, 2971
Bsp1407I TGTACA 1 cut(s) 3290
Bsp19I CCATGG 1 cut(s) 1099
BspACI CCGC 3 cut(s) 132, 2676, 3103
BspANI GGCC 8 cut(s) 131, 665, 864, 1105, 3152, 3650, 3698, 3730
BspCNI CTCAG 9 cut(s) 348, 811, 1033, 1261, 1944, 2010, 2312, 2808, 3413
BspDI ATCGAT 1 cut(s) 1264
BspLI GGNNCC 5 cut(s) 640, 1254, 1617, 2649, 3745
BspMAI CTGCAG 5 cut(s) 16, 79, 126, 1534, 2713
BspMI ACCTGC 2 cut(s) 626, 3157
BspPI GGATC 6 cut(s) 265, 790, 830, 1143, 1459, 3037
BspT107I GGYRCC 1 cut(s) 638
BspTNI GGTCTC 1 cut(s) 1037
BsrBI CCGCTC 1 cut(s) 3103
BsrDI GCAATG 3 cut(s) 1410, 1528, 1787
BsrFI RCCGGY 2 cut(s) 318, 2699
BsrGI TGTACA 1 cut(s) 3290
BsrI ACTGG 9 cut(s) 600, 1154, 2074, 2167, 2604, 2906, 3251, 3350, 3369
BssAI RCCGGY 2 cut(s) 318, 2699
BssECI CCNNGG 6 cut(s) 481, 799, 1099, 1912, 2642, 2923
BssNAI GTATAC 2 cut(s) 1096, 3115
BssSI CACGAG 1 cut(s) 3410
BssT1I CCWWGG 3 cut(s) 799, 1099, 1912
Bst1107I GTATAC 2 cut(s) 1096, 3115
Bst2BI CACGAG 1 cut(s) 3410
Bst2UI CCWGG 5 cut(s) 2085, 2415, 2643, 2924, 3417
Bst6I CTCTTC 3 cut(s) 1331, 2277, 3618
BstAPI GCANNNNNTGC 1 cut(s) 1340
BstAUI TGTACA 1 cut(s) 3290
BstBAI YACGTR 1 cut(s) 1446
BstC8I GCNNGC 9 cut(s) 54, 610, 1336, 1760, 1824, 2246, 2319, 2875, 3327
BstDSI CCRYGG 1 cut(s) 1099
BstEII GGTNACC 1 cut(s) 2695
BstF5I GGATG 6 cut(s) 1455, 2146, 2480, 2503, 2691, 2948
BstHHI GCGC 5 cut(s) 162, 1368, 1417, 2442, 3166
BstMAI GTCTC 4 cut(s) 815, 1037, 1575, 2175
BstMCI CGRYCG 1 cut(s) 3651
BstMWI GCNNNNNNNGC 5 cut(s) 1340, 2446, 2528, 2813, 2986
BstNI CCWGG 5 cut(s) 2085, 2415, 2643, 2924, 3417
BstNSI RCATGY 4 cut(s) 56, 275, 814, 1338
BstPAI GACNNNNGTC 1 cut(s) 1839
BstPI GGTNACC 1 cut(s) 2695
BstSCI CCNGG 7 cut(s) 480, 2083, 2413, 2641, 2766, 2922, 3415
BstSFI CTRYAG 9 cut(s) 12, 75, 122, 1530, 1875, 2454, 2709, 2746, 3465
BstSLI GKGCMC 1 cut(s) 643
BstV1I GCAGC 8 cut(s) 108, 198, 617, 1754, 2518, 2540, 2932, 3341
BstV2I GAAGAC 5 cut(s) 111, 539, 971, 1167, 3479
BstX2I RGATCY 5 cut(s) 795, 835, 1464, 2342, 3508
BstXI CCANNNNNNTGG 1 cut(s) 1015
BstYI RGATCY 5 cut(s) 795, 835, 1464, 2342, 3508
BstZ17I GTATAC 2 cut(s) 1096, 3115
BstZI CGGCCG 1 cut(s) 3648
Bsu15I ATCGAT 1 cut(s) 1264
BsuRI GGCC 8 cut(s) 131, 665, 864, 1105, 3152, 3650, 3698, 3730
BsuTUI ATCGAT 1 cut(s) 1264
BtgI CCRYGG 1 cut(s) 1099
BtsCI GGATG 6 cut(s) 1455, 2146, 2480, 2503, 2691, 2948
BtsI GCAGTG 6 cut(s) 72, 131, 1527, 1569, 2466, 3293
BveI ACCTGC 2 cut(s) 626, 3157
Cac8I GCNNGC 9 cut(s) 54, 610, 1336, 1760, 1824, 2246, 2319, 2875, 3327
CaiI CAGNNNCTG 2 cut(s) 2017, 3375
CfoI GCGC 5 cut(s) 162, 1368, 1417, 2442, 3166
Cfr10I RCCGGY 2 cut(s) 318, 2699
ClaI ATCGAT 1 cut(s) 1264
CseI GACGC 1 cut(s) 1664
CsiI ACCWGGT 1 cut(s) 2413
Csp6I GTAC 8 cut(s) 1147, 1153, 1443, 2411, 3139, 3291, 3530, 3584
CspAI ACCGGT 1 cut(s) 2699
CviQI GTAC 8 cut(s) 1147, 1153, 1443, 2411, 3139, 3291, 3530, 3584
DraI TTTAAA 2 cut(s) 1941, 2869
EaeI YGGCCR 3 cut(s) 663, 862, 3648
EagI CGGCCG 1 cut(s) 3648
Eam1104I CTCTTC 3 cut(s) 1331, 2277, 3618
EarI CTCTTC 3 cut(s) 1331, 2277, 3618
EclXI CGGCCG 1 cut(s) 3648
Eco130I CCWWGG 3 cut(s) 799, 1099, 1912
Eco31I GGTCTC 1 cut(s) 1037
Eco32I GATATC 2 cut(s) 933, 1872
Eco47I GGWCC 8 cut(s) 36, 87, 902, 2702, 3361, 3419, 3474, 3743
Eco52I CGGCCG 1 cut(s) 3648
Eco57I CTGAAG 9 cut(s) 965, 1013, 1232, 3081, 3182, 3289, 3635, 3659, 3693
Eco88I CYCGRG 1 cut(s) 1709
Eco91I GGTNACC 1 cut(s) 2695
EcoO109I RGGNCCY 1 cut(s) 36
EcoO65I GGTNACC 1 cut(s) 2695
EcoRII CCWGG 5 cut(s) 2083, 2413, 2641, 2922, 3415
EcoRV GATATC 2 cut(s) 933, 1872
EcoT14I CCWWGG 3 cut(s) 799, 1099, 1912
EcoT22I ATGCAT 1 cut(s) 58
ErhI CCWWGG 3 cut(s) 799, 1099, 1912
FalI AAGNNNNNCTT 6 cut(s) 1323, 1355, 1934, 1966, 2706, 2738
FaqI GGGAC 2 cut(s) 749, 3729
FauI CCCGC 1 cut(s) 2683
FauNDI CATATG 1 cut(s) 2221
FbaI TGATCA 2 cut(s) 291, 3171
FblI GTMKAC 4 cut(s) 1095, 1188, 2001, 3114
FokI GGATG 6 cut(s) 1462, 2153, 2467, 2510, 2698, 2935
FspI TGCGCA 1 cut(s) 3165
GlaI GCGC 5 cut(s) 161, 1367, 1416, 2441, 3165
GsuI CTGGAG 2 cut(s) 2106, 2923
HaeIII GGCC 8 cut(s) 131, 665, 864, 1105, 3152, 3650, 3698, 3730
HapII CCGG 4 cut(s) 319, 481, 2700, 2767
HgaI GACGC 1 cut(s) 1664
HhaI GCGC 5 cut(s) 162, 1368, 1417, 2442, 3166
Hin6I GCGC 5 cut(s) 160, 1366, 1415, 2440, 3164
HinP1I GCGC 5 cut(s) 160, 1366, 1415, 2440, 3164
HincII GTYRAC 2 cut(s) 1189, 2002
HindII GTYRAC 2 cut(s) 1189, 2002
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 7 cut(s) 770, 991, 1004, 1636, 1714, 2285, 2753
HpaII CCGG 4 cut(s) 319, 481, 2700, 2767
HphI GGTGA 6 cut(s) 727, 986, 1912, 2588, 2689, 3181
Hpy166II GTNNAC 5 cut(s) 1096, 1189, 2002, 3115, 3293
Hpy8I GTNNAC 5 cut(s) 1096, 1189, 2002, 3115, 3293
HpyCH4IV ACGT 3 cut(s) 152, 1445, 2311
HpyF10VI GCNNNNNNNGC 5 cut(s) 1340, 2446, 2528, 2813, 2986
HpySE526I ACGT 3 cut(s) 152, 1445, 2311
HspAI GCGC 5 cut(s) 160, 1366, 1415, 2440, 3164
Ksp22I TGATCA 2 cut(s) 291, 3171
LmnI GCTCC 8 cut(s) 69, 1252, 1880, 2117, 2464, 2860, 2966, 3077
Lsp1109I GCAGC 8 cut(s) 108, 198, 617, 1754, 2518, 2540, 2932, 3341
LweI GCATC 4 cut(s) 65, 1273, 2509, 2957
MabI ACCWGGT 1 cut(s) 2413
MaeII ACGT 3 cut(s) 152, 1445, 2311
MbiI CCGCTC 1 cut(s) 3103
MfeI CAATTG 2 cut(s) 825, 986
MflI RGATCY 5 cut(s) 795, 835, 1464, 2342, 3508
MhlI GDGCHC 4 cut(s) 74, 643, 1930, 2971
MlsI TGGCCA 2 cut(s) 665, 864
MluNI TGGCCA 2 cut(s) 665, 864
MlyI GAGTC 4 cut(s) 985, 1723, 2294, 2762
MmeI TCCRAC 2 cut(s) 1204, 3254
Mox20I TGGCCA 2 cut(s) 665, 864
Mph1103I ATGCAT 1 cut(s) 58
MroXI GAANNNNTTC 2 cut(s) 423, 1353
MscI TGGCCA 2 cut(s) 665, 864
MseI TTAA 6 cut(s) 462, 693, 1296, 1940, 2868, 3479
MslI CAYNNNNRTG 4 cut(s) 1176, 1281, 2761, 3687
Msp20I TGGCCA 2 cut(s) 665, 864
MspA1I CMGCKG 2 cut(s) 2531, 2799
MspI CCGG 4 cut(s) 319, 481, 2700, 2767
MspR9I CCNGG 7 cut(s) 482, 2085, 2415, 2643, 2768, 2924, 3417
MunI CAATTG 2 cut(s) 825, 986
Mva1269I GAATGC 1 cut(s) 2624
MvaI CCWGG 5 cut(s) 2085, 2415, 2643, 2924, 3417
MwoI GCNNNNNNNGC 5 cut(s) 1340, 2446, 2528, 2813, 2986
NciI CCSGG 2 cut(s) 482, 2768
NcoI CCATGG 1 cut(s) 1099
NdeI CATATG 1 cut(s) 2221
NlaIV GGNNCC 5 cut(s) 640, 1254, 1617, 2649, 3745
NmuCI GTSAC 6 cut(s) 733, 970, 2252, 2695, 2754, 3554
NsbI TGCGCA 1 cut(s) 3165
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 4 cut(s) 56, 275, 814, 1338
PaeI GCATGC 2 cut(s) 56, 1338
PaqCI CACCTGC 2 cut(s) 626, 3157
PciI ACATGT 1 cut(s) 810
PctI GAATGC 1 cut(s) 2624
PdmI GAANNNNTTC 2 cut(s) 423, 1353
PfeI GAWTC 3 cut(s) 770, 1004, 1636
Pfl23II CGTACG 1 cut(s) 1442
PinAI ACCGGT 1 cut(s) 2699
PleI GAGTC 4 cut(s) 985, 1722, 2293, 2761
PpsI GAGTC 4 cut(s) 985, 1722, 2293, 2761
Ppu21I YACGTR 1 cut(s) 1446
PpuMI RGGWCCY 1 cut(s) 36
PscI ACATGT 1 cut(s) 810
PshAI GACNNNNGTC 1 cut(s) 1839
PsiI TTATAA 2 cut(s) 507, 1725
Psp1406I AACGTT 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 5 cut(s) 2083, 2413, 2641, 2922, 3415
PspEI GGTNACC 1 cut(s) 2695
PspGI CCWGG 5 cut(s) 2083, 2413, 2641, 2922, 3415
PspLI CGTACG 1 cut(s) 1442
PspN4I GGNNCC 5 cut(s) 640, 1254, 1617, 2649, 3745
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 5 cut(s) 16, 79, 126, 1534, 2713
PstNI CAGNNNCTG 2 cut(s) 2017, 3375
PsuI RGATCY 5 cut(s) 795, 835, 1464, 2342, 3508
PvuII CAGCTG 2 cut(s) 2531, 2799
RsaI GTAC 8 cut(s) 1148, 1154, 1444, 2412, 3140, 3292, 3531, 3585
RsaNI GTAC 8 cut(s) 1147, 1153, 1443, 2411, 3139, 3291, 3530, 3584
RseI CAYNNNNRTG 4 cut(s) 1176, 1281, 2761, 3687
SalI GTCGAC 2 cut(s) 1187, 2000
SaqAI TTAA 6 cut(s) 462, 693, 1296, 1940, 2868, 3479
ScaI AGTACT 1 cut(s) 1148
SchI GAGTC 4 cut(s) 985, 1723, 2294, 2762
ScrFI CCNGG 7 cut(s) 482, 2085, 2415, 2643, 2768, 2924, 3417
SduI GDGCHC 4 cut(s) 74, 643, 1930, 2971
SexAI ACCWGGT 1 cut(s) 2413
SfaNI GCATC 4 cut(s) 65, 1273, 2509, 2957
SfcI CTRYAG 9 cut(s) 12, 75, 122, 1530, 1875, 2454, 2709, 2746, 3465
SinI GGWCC 8 cut(s) 36, 87, 902, 2702, 3361, 3419, 3474, 3743
SmiMI CAYNNNNRTG 4 cut(s) 1176, 1281, 2761, 3687
SpeI ACTAGT 1 cut(s) 2401
SphI GCATGC 2 cut(s) 56, 1338
SsiI CCGC 3 cut(s) 132, 2676, 3103
SspI AATATT 1 cut(s) 1994
StyD4I CCNGG 7 cut(s) 480, 2083, 2413, 2641, 2766, 2922, 3415
StyI CCWWGG 3 cut(s) 799, 1099, 1912
TaiI ACGT 3 cut(s) 155, 1448, 2314
TaqII GACCGA 2 cut(s) 3436, 3731
TatI WGTACW 4 cut(s) 1146, 3138, 3290, 3529
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 3 cut(s) 770, 1004, 1636
Tru1I TTAA 6 cut(s) 462, 693, 1296, 1940, 2868, 3479
Tru9I TTAA 6 cut(s) 462, 693, 1296, 1940, 2868, 3479
TseFI GTSAC 6 cut(s) 733, 970, 2252, 2695, 2754, 3554
TseI GCWGC 9 cut(s) 11, 121, 186, 605, 1742, 2528, 2531, 2945, 3329
Tsp45I GTSAC 6 cut(s) 733, 970, 2252, 2695, 2754, 3554
VpaK11BI GGWCC 8 cut(s) 36, 87, 902, 2702, 3361, 3419, 3474, 3743
XapI RAATTY 7 cut(s) 394, 852, 1474, 2348, 3180, 3238, 3426
XceI RCATGY 4 cut(s) 56, 275, 814, 1338
XcmI CCANNNNNNNNNTGG 1 cut(s) 2491
XmaJI CCTAGG 1 cut(s) 1912
XmiI GTMKAC 4 cut(s) 1095, 1188, 2001, 3114
XmnI GAANNNNTTC 2 cut(s) 423, 1353
ZrmI AGTACT 1 cut(s) 1148
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.