RLG00000021856

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000472
Physical Location & Seq
Forward (+)
78844256 .. 78851875
7620 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021856

Sequence Viewer

Length: 4155 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAGGTTGAGTTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCGGTTGTAACAAAGAGGAAGATGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTATTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTCGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACAAGGACATTTGGGTGCAAGTCTCAAGCATACAAATTAGAGATTCTAAAAGAAGTAAGTGGCATCATCAAGCCTTCAAGTCAATATGACTTGCATATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGCTGCCAGGGTATTGGAAGCAGAGCCGATATTATGAAAGAAGTTGCTAGAAGAGAGAACCAAGCTGGTATTGTCCCAGAACCAGACATTGACACTTACATGAAGGCCATTTCAATTGAAGGGTTGAAAGAATCTTTAATGACAGACTATATAATAAAGATCCTTGGGCTGGATATTTGTGCTGATACAATCGTAGGGGATGCAATGCAAAGAGGAATCTCCGGTGGTCAAAAGAAAAGGCTGACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACTTTTCAAATTGTAACTTGTCTGCAGCAGTTGTCTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACTTTTCATCTGTTTGATGATATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCTAGTGACAATGTTGTGGAGTTCTTTCAGGAGTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTATAGTTATATCAGTGTTGATAAGTTCGTAAATATGTTTAAAGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAACTTTCCAAGCCTTTCGATCAATCTGAGTGCCATAAACATGCTTTGTCATTCAACATTTACTCAATGAGAAAATGGGAGCTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGCGAAACTCATTTGTTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAATAACAATGACAATCTTTTCACGTACATGGATGAAAATCGACGAGACCCATGCAAAGTACTACATGAGTTCTTTGTTTTATGCTCTACTTAGACTGCTCTGCATTGGAATTGCGGAGATATCAATGACTGCCTCTAGACTTGCAGTCTTCTATAAGCAAAGAGATTTCTACTTCTATCCTGCATGGGCTTATTCTCTTCCAGCTGCCATTCTAAAGATTCCATTCTCATTGCTAGATGCATTTCTTTGGACAGCCCTCACTTATTATGTTATTGGTTACTGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTTTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTCGGTCTATTCTCTTTAATAGTAATGTATCTATTTGGTGGCTTTATAATTCCAAAATCTTCTCTACCTGCTTGGTTGGCATGGGGATTTTGGGTTTCTCCATTGGCCTTTGCAGAACTAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTCACTATAGGCCAGCAAGCTCTAATTAACCACGGTCTAAACTTCAGTGACTACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGATTCACATGCATACTCAGTTATTCAAAGTCTCCAGGTAGTTCTCGGACTATCATCTCTCATGAAAGATTCTCCCGTCTGAAGAAAAAGGATACTTTAAACAATTCCTGTCAAGAACACGAATTAACTTGTGTAGATACTGACATAACTTCTTCAGAATCTACAAATGTAGGCATGGTGTTACCTTTTGAGCCCGTAAGTATATCATTTGAGAAACTGCATTACTTTATTGATACACCCCAGAAACTGAGAGAGCTAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGCGCATTTAGACCTGGAATTGTCACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACGACACTGATGGATGTTCTTTCAGGAAGAAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAAGTCCAAGAAACATATGCCAGAATATCGGGGTATTGCGAGCAAAGTGACATACATTCTCCAGAGCTTACAGTAGAAGAATCAGTAGCATACTCAGCCTGGTTACGCTTGCCATCCGAGATTGATAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTAATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCGACTGAACAGCGTAAAAGGTTAACAATAGCAGTAGAGCTTGTTTCAAATCCATCAATAATATTCATGGATGAACCCACGTCTGGTTTAGATGCAAGAGCAGCTGCAATAATTATGCGAGTTGTGAAAAATATCGTCAGTACAGGGAGGACCGTTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCATTCGACGAGCTTATTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAGCTGGGTCAAGATTCAAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAATTACAACCCAGCAACATGGATGTTAGAAGTCACAAGTCCTTCTGCAGAAGCCAAACTGGCCTTAGATTTTGCTCAGCTTTATAGAGAATCGCATCTATGCCAGAAGAACAATGATCTAGTTAGAGAACTCAGCTTTCCAGAACAAGGCTCAAAGGAATTGTATTTTCCTACTCACTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTATTGGAGAAATCCAAGATATAATCTGGGCCGATTGGCAATTACTGCTGCATCTTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAGAATAAATGATGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATTGGTAACAGTTCCTCTGTTTTACCATTTGTCGCTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTTTCACAGGTGGTCATTGAACTTCCCTATATATTACTTCAGGTAGTTATCTTTTGGACCATTACATATCCAACCATTGGGTTCCACTGGTCACTTTACAAAGTATTCTGGTATGTGTATGCTATGTTTTGTACGCTTCTCTACTTCACTTACTTCGGTATATTGGTTGCTTCTGCGACCCCAACTTTCCAAGTAGCTTCAGTATTAGCAAGTTTCTGCTACACCGTGTTTAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATCTAAACAGGGAAATTGTACTCCGCGGGGAAGAAAAGACTATCAGTTCCTTCTTAGAAAGCATCTATGGATACAACTATGATGATCTAGGAATTGTAGGCACTGTTCTTCTTGCATATCCACTAGTTTTCGCATTTGCGTTTGCAGTTGCCACTGAAAAACTCAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1385

Amino Acids

157.49

Weight (kDa)

6.32

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 336 - 390 7.1e-06 ABC-2 type transporter
ABC2_membrane PF01061 457 - 668 9.6e-42 ABC-2 type transporter
PDR_assoc PF08370 673 - 735 7.5e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 812 - 964 2.1e-19 ABC transporter
ABC2_membrane PF01061 1109 - 1323 5.5e-56 ABC-2 type transporter
ABC2_membrane_3 PF12698 1155 - 1354 5.1e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1910
AasI GACNNNNNNGTC 1 cut(s) 1265
Acc36I ACCTGC 1 cut(s) 1939
Acc65I GGTACC 2 cut(s) 1197, 2577
AccB1I GGYRCC 2 cut(s) 1197, 2577
AccB7I CCANNNNNTGG 3 cut(s) 1165, 3317, 3701
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1071, 3579
AccII CGCG 1 cut(s) 3999
AciI CCGC 4 cut(s) 428, 1577, 3997, 3999
AclWI GGATC 5 cut(s) 77, 81, 766, 1188, 3502
AcsI RAATTY 2 cut(s) 385, 2000
AfiI CCNNNNNNNGG 8 cut(s) 781, 1139, 1162, 1165, 2891, 3275, 3317, 3701
AhdI GACNNNNNGTC 1 cut(s) 1607
AhlI ACTAGT 1 cut(s) 4096
AjiI CACGTC 1 cut(s) 2889
AjnI CCWGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
Alw21I GWGCWC 1 cut(s) 3436
Alw26I GTCTC 7 cut(s) 501, 972, 1013, 1502, 2184, 2553, 3347
AlwI GGATC 5 cut(s) 77, 81, 766, 1188, 3502
AlwNI CAGNNNCTG 2 cut(s) 1862, 2395
Ama87I CYCGRG 1 cut(s) 3865
AoxI GGCC 8 cut(s) 717, 877, 916, 1079, 1968, 2050, 3189, 3391
ApeKI GCWGC 8 cut(s) 11, 131, 615, 958, 1667, 2909, 2912, 3410
ApoI RAATTY 2 cut(s) 385, 2000
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1398, 1846, 2742
Asp718I GGTACC 2 cut(s) 1197, 2577
AspLEI GCGC 2 cut(s) 2453, 3570
AspS9I GGNCC 8 cut(s) 36, 878, 1079, 1837, 2958, 3391, 3681, 3939
AsuHPI GGTGA 1 cut(s) 875
AvaI CYCGRG 1 cut(s) 3865
AvaII GGWCC 5 cut(s) 36, 1837, 2958, 3681, 3939
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BanI GGYRCC 2 cut(s) 1197, 2577
BanII GRGCYC 2 cut(s) 253, 2343
BauI CACGAG 1 cut(s) 1790
BbsI GAAGAC 1 cut(s) 1603
Bbv12I GWGCWC 1 cut(s) 3436
BbvI GCAGC 7 cut(s) 118, 602, 970, 1654, 2899, 2921, 3397
BccI CCATC 7 cut(s) 1045, 2128, 2476, 2509, 2704, 2869, 3315
BcgI CGANNNNNNTGC 2 cut(s) 1496, 1530
BciT130I CCWGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
BciVI GTATCC 2 cut(s) 2233, 4037
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 7 cut(s) 501, 972, 1013, 1502, 2184, 2553, 3347
BcuI ACTAGT 1 cut(s) 4096
BfmI CTRYAG 6 cut(s) 12, 956, 1216, 2046, 2426, 3174
BfuAI ACCTGC 1 cut(s) 1939
BfuI GTATCC 2 cut(s) 2233, 4037
BglI GCCNNNNNGGC 1 cut(s) 3188
BglII AGATCT 1 cut(s) 3973
BisI GCNGC 9 cut(s) 12, 132, 428, 616, 959, 1668, 2910, 2913, 3411
BlpI GCTNAGC 1 cut(s) 3204
BlsI GCNGC 9 cut(s) 13, 133, 429, 617, 960, 1669, 2911, 2914, 3412
BmcAI AGTACT 3 cut(s) 1193, 1523, 2742
Bme1390I CCNGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
Bme18I GGWCC 5 cut(s) 36, 1837, 2958, 3681, 3939
BmeRI GACNNNNNGTC 1 cut(s) 1607
BmeT110I CYCGRG 1 cut(s) 3865
BmgBI CACGTC 1 cut(s) 2889
BmgT120I GGNCC 8 cut(s) 36, 878, 1079, 1837, 2958, 3391, 3681, 3939
BmiI GGNNCC 5 cut(s) 250, 1199, 2579, 3114, 3707
BmrFI CCNGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
BpiI GAAGAC 1 cut(s) 1603
BpmI CTGGAG 2 cut(s) 2166, 2628
Bpu1102I GCTNAGC 1 cut(s) 3204
BpuEI CTTGAG 2 cut(s) 269, 483
BsaAI YACGTR 1 cut(s) 1487
BsaBI GATNNNNATC 1 cut(s) 1499
BsaI GGTCTC 1 cut(s) 1502
BsaJI CCNNGG 9 cut(s) 252, 619, 775, 1075, 1833, 2012, 2071, 2146, 3997
BsaWI WCCGGW 2 cut(s) 179, 833
BsaXI ACNNNNNCTCC 2 cut(s) 3027, 3057
Bsc4I CCNNNNNNNGG 8 cut(s) 781, 1139, 1162, 1165, 2891, 3275, 3317, 3701
Bse1I ACTGG 7 cut(s) 603, 1199, 2452, 2545, 3192, 3716, 3923
Bse3DI GCAATG 4 cut(s) 822, 1455, 1691, 3577
Bse8I GATNNNNATC 1 cut(s) 1499
BseBI CCWGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
BseDI CCNNGG 9 cut(s) 252, 619, 775, 1075, 1833, 2012, 2071, 2146, 3997
BseJI GATNNNNATC 1 cut(s) 1499
BseLI CCNNNNNNNGG 8 cut(s) 781, 1139, 1162, 1165, 2891, 3275, 3317, 3701
BseMI GCAATG 4 cut(s) 822, 1455, 1691, 3577
BseMII CTCAG 8 cut(s) 1305, 2179, 2387, 2691, 2715, 3218, 3274, 3555
BseNI ACTGG 7 cut(s) 603, 1199, 2452, 2545, 3192, 3716, 3923
BseRI GAGGAG 2 cut(s) 3048, 3598
BseXI GCAGC 7 cut(s) 118, 602, 970, 1654, 2899, 2921, 3397
BseYI CCCAGC 3 cut(s) 880, 3061, 3139
Bsh1236I CGCG 1 cut(s) 3999
BshFI GGCC 8 cut(s) 719, 879, 918, 1081, 1970, 2052, 3191, 3393
BshNI GGYRCC 2 cut(s) 1197, 2577
BsiHKAI GWGCWC 1 cut(s) 3436
BsiHKCI CYCGRG 1 cut(s) 3865
BsiSI CCGG 2 cut(s) 180, 834
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 8 cut(s) 781, 1139, 1162, 1165, 2891, 3275, 3317, 3701
BsmAI GTCTC 7 cut(s) 501, 972, 1013, 1502, 2184, 2553, 3347
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 3 cut(s) 162, 3005, 3486
BsnI GGCC 8 cut(s) 719, 879, 918, 1081, 1970, 2052, 3191, 3393
Bso31I GGTCTC 1 cut(s) 1502
BsoBI CYCGRG 1 cut(s) 3865
Bsp1286I GDGCHC 3 cut(s) 253, 2343, 3436
Bsp1720I GCTNAGC 1 cut(s) 3204
Bsp19I CCATGG 1 cut(s) 1075
BspACI CCGC 4 cut(s) 428, 1577, 3997, 3999
BspANI GGCC 8 cut(s) 719, 879, 918, 1081, 1970, 2052, 3191, 3393
BspCNI CTCAG 8 cut(s) 1306, 2178, 2388, 2690, 2716, 3217, 3273, 3556
BspFNI CGCG 1 cut(s) 3999
BspHI TCATGA 3 cut(s) 205, 1404, 2209
BspLI GGNNCC 5 cut(s) 250, 1199, 2579, 3114, 3707
BspMAI CTGCAG 3 cut(s) 16, 960, 3178
BspMI ACCTGC 1 cut(s) 1939
BspPI GGATC 5 cut(s) 77, 81, 766, 1188, 3502
BspT107I GGYRCC 2 cut(s) 1197, 2577
BspTNI GGTCTC 1 cut(s) 1502
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 822, 1455, 1691, 3577
BsrI ACTGG 7 cut(s) 603, 1199, 2452, 2545, 3192, 3716, 3923
BssECI CCNNGG 9 cut(s) 252, 619, 775, 1075, 1833, 2012, 2071, 2146, 3997
BssNAI GTATAC 2 cut(s) 1072, 3580
BssSI CACGAG 1 cut(s) 1790
BssT1I CCWWGG 5 cut(s) 775, 1075, 1833, 2012, 2146
Bst1107I GTATAC 2 cut(s) 1072, 3580
Bst2BI CACGAG 1 cut(s) 1790
Bst2UI CCWGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
Bst6I CTCTTC 3 cut(s) 658, 1278, 1665
BstAPI GCANNNNNTGC 1 cut(s) 3407
BstBAI YACGTR 1 cut(s) 1487
BstC8I GCNNGC 6 cut(s) 54, 1381, 2054, 2058, 2624, 2693
BstDSI CCRYGG 3 cut(s) 1075, 2071, 3997
BstENI CCTNNNNNAGG 1 cut(s) 1160
BstFNI CGCG 1 cut(s) 3999
BstHHI GCGC 2 cut(s) 2453, 3570
BstMAI GTCTC 7 cut(s) 501, 972, 1013, 1502, 2184, 2553, 3347
BstMWI GCNNNNNNNGC 6 cut(s) 924, 1940, 2678, 2909, 3188, 3407
BstNI CCWGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
BstNSI RCATGY 5 cut(s) 56, 1331, 1383, 2160, 3342
BstSCI CCNGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
BstSFI CTRYAG 6 cut(s) 12, 956, 1216, 2046, 2426, 3174
BstUI CGCG 1 cut(s) 3999
BstV1I GCAGC 7 cut(s) 118, 602, 970, 1654, 2899, 2921, 3397
BstV2I GAAGAC 1 cut(s) 1603
BstX2I RGATCY 3 cut(s) 86, 771, 3973
BstXI CCANNNNNNTGG 4 cut(s) 441, 626, 991, 3147
BstYI RGATCY 3 cut(s) 86, 771, 3973
BstZ17I GTATAC 2 cut(s) 1072, 3580
BsuI GTATCC 2 cut(s) 2233, 4037
BsuRI GGCC 8 cut(s) 719, 879, 918, 1081, 1970, 2052, 3191, 3393
BtgI CCRYGG 3 cut(s) 1075, 2071, 3997
BtrI CACGTC 1 cut(s) 2889
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 8 cut(s) 131, 596, 1234, 2092, 2510, 3709, 4074, 4125
BveI ACCTGC 1 cut(s) 1939
Cac8I GCNNGC 6 cut(s) 54, 1381, 2054, 2058, 2624, 2693
CaiI CAGNNNCTG 2 cut(s) 1862, 2395
CciI TCATGA 3 cut(s) 205, 1404, 2209
CfoI GCGC 2 cut(s) 2453, 3570
Cfr13I GGNCC 8 cut(s) 36, 878, 1079, 1837, 2958, 3391, 3681, 3939
Cfr42I CCGCGG 1 cut(s) 4000
CsiI ACCWGGT 1 cut(s) 2791
DraI TTTAAA 3 cut(s) 1255, 2247, 3334
DrdI GACNNNNNNGTC 1 cut(s) 1265
DriI GACNNNNNGTC 1 cut(s) 1607
DseDI GACNNNNNNGTC 1 cut(s) 1265
Eam1104I CTCTTC 3 cut(s) 658, 1278, 1665
Eam1105I GACNNNNNGTC 1 cut(s) 1607
EarI CTCTTC 3 cut(s) 658, 1278, 1665
Eco130I CCWWGG 5 cut(s) 775, 1075, 1833, 2012, 2146
Eco147I AGGCCT 1 cut(s) 918
Eco24I GRGCYC 2 cut(s) 253, 2343
Eco31I GGTCTC 1 cut(s) 1502
Eco32I GATATC 3 cut(s) 909, 1584, 2106
Eco47I GGWCC 5 cut(s) 36, 1837, 2958, 3681, 3939
Eco88I CYCGRG 1 cut(s) 3865
EcoNI CCTNNNNNAGG 1 cut(s) 1160
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
EcoRV GATATC 3 cut(s) 909, 1584, 2106
EcoT14I CCWWGG 5 cut(s) 775, 1075, 1833, 2012, 2146
EcoT22I ATGCAT 4 cut(s) 58, 1705, 2162, 3521
EcoT38I GRGCYC 2 cut(s) 253, 2343
ErhI CCWWGG 5 cut(s) 775, 1075, 1833, 2012, 2146
FalI AAGNNNNNCTT 6 cut(s) 1275, 1307, 1368, 1400, 2727, 2759
FaqI GGGAC 1 cut(s) 671
FauI CCCGC 1 cut(s) 3992
FauNDI CATATG 1 cut(s) 2599
FbaI TGATCA 1 cut(s) 202
FblI GTMKAC 2 cut(s) 1071, 3579
Fnu4HI GCNGC 9 cut(s) 12, 132, 428, 616, 959, 1668, 2910, 2913, 3411
FriOI GRGCYC 2 cut(s) 253, 2343
Fsp4HI GCNGC 9 cut(s) 12, 132, 428, 616, 959, 1668, 2910, 2913, 3411
GlaI GCGC 2 cut(s) 2452, 3569
GluI GCNGC 9 cut(s) 12, 132, 428, 616, 959, 1668, 2910, 2913, 3411
GsaI CCCAGC 3 cut(s) 884, 3065, 3143
GsuI CTGGAG 2 cut(s) 2166, 2628
HaeIII GGCC 8 cut(s) 719, 879, 918, 1081, 1970, 2052, 3191, 3393
HapII CCGG 2 cut(s) 180, 834
HhaI GCGC 2 cut(s) 2453, 3570
Hin6I GCGC 2 cut(s) 2451, 3568
HinP1I GCGC 2 cut(s) 2451, 3568
HincII GTYRAC 1 cut(s) 2832
HindII GTYRAC 1 cut(s) 2832
HindIII AAGCTT 3 cut(s) 457, 1277, 3080
HpaI GTTAAC 1 cut(s) 2832
HpaII CCGG 2 cut(s) 180, 834
HphI GGTGA 1 cut(s) 875
Hpy166II GTNNAC 3 cut(s) 1072, 2832, 3580
Hpy8I GTNNAC 3 cut(s) 1072, 2832, 3580
Hpy99I CGWCG 3 cut(s) 264, 1508, 3014
HpyCH4IV ACGT 4 cut(s) 170, 259, 1486, 2888
HpyF10VI GCNNNNNNNGC 6 cut(s) 924, 1940, 2678, 2909, 3188, 3407
HpySE526I ACGT 4 cut(s) 170, 259, 1486, 2888
HspAI GCGC 2 cut(s) 2451, 3568
KpnI GGTACC 2 cut(s) 1201, 2581
Ksp22I TGATCA 1 cut(s) 202
KspAI GTTAAC 1 cut(s) 2832
KspI CCGCGG 1 cut(s) 4000
LmnI GCTCC 9 cut(s) 248, 435, 932, 1366, 2014, 2114, 2495, 3325, 3431
Lsp1109I GCAGC 7 cut(s) 118, 602, 970, 1654, 2899, 2921, 3397
MabI ACCWGGT 1 cut(s) 2791
MaeII ACGT 4 cut(s) 170, 259, 1486, 2888
MbiI CCGCTC 1 cut(s) 430
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 86, 771, 3973
MhlI GDGCHC 3 cut(s) 253, 2343, 3436
MmeI TCCRAC 2 cut(s) 1249, 3719
Mph1103I ATGCAT 4 cut(s) 58, 1705, 2162, 3521
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1398, 1846, 2742
MslI CAYNNNNRTG 5 cut(s) 51, 487, 710, 1326, 1489
MspA1I CMGCKG 3 cut(s) 1667, 2912, 3999
MspI CCGG 2 cut(s) 180, 834
MspR9I CCNGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 3 cut(s) 162, 3005, 3486
MvaI CCWGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
MvnI CGCG 1 cut(s) 3999
MwoI GCNNNNNNNGC 6 cut(s) 924, 1940, 2678, 2909, 3188, 3407
NcoI CCATGG 1 cut(s) 1075
NdeI CATATG 1 cut(s) 2599
NlaIV GGNNCC 5 cut(s) 250, 1199, 2579, 3114, 3707
NmuCI GTSAC 8 cut(s) 171, 1085, 2041, 2087, 2470, 2630, 3160, 3714
NsiI ATGCAT 4 cut(s) 58, 1705, 2162, 3521
NspI RCATGY 5 cut(s) 56, 1331, 1383, 2160, 3342
PaeI GCATGC 2 cut(s) 56, 1383
PagI TCATGA 3 cut(s) 205, 1404, 2209
PceI AGGCCT 1 cut(s) 918
PctI GAATGC 3 cut(s) 162, 3005, 3486
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1398, 1846, 2742
PflMI CCANNNNNTGG 3 cut(s) 1165, 3317, 3701
PkrI GCNGC 9 cut(s) 13, 133, 429, 617, 960, 1669, 2911, 2914, 3412
Ppu21I YACGTR 1 cut(s) 1487
PpuMI RGGWCCY 1 cut(s) 36
PsiI TTATAA 1 cut(s) 1910
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
PspFI CCCAGC 3 cut(s) 880, 3061, 3139
PspGI CCWGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
PspN4I GGNNCC 5 cut(s) 250, 1199, 2579, 3114, 3707
PspPI GGNCC 8 cut(s) 36, 878, 1079, 1837, 2958, 3391, 3681, 3939
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 4062, 4094
PstI CTGCAG 3 cut(s) 16, 960, 3178
PstNI CAGNNNCTG 2 cut(s) 1862, 2395
PsuI RGATCY 3 cut(s) 86, 771, 3973
PvuII CAGCTG 2 cut(s) 1667, 2912
RseI CAYNNNNRTG 5 cut(s) 51, 487, 710, 1326, 1489
SacII CCGCGG 1 cut(s) 4000
SatI GCNGC 9 cut(s) 12, 132, 428, 616, 959, 1668, 2910, 2913, 3411
Sau96I GGNCC 8 cut(s) 36, 878, 1079, 1837, 2958, 3391, 3681, 3939
ScaI AGTACT 3 cut(s) 1193, 1523, 2742
ScrFI CCNGG 6 cut(s) 254, 620, 2184, 2463, 2683, 2793
SduI GDGCHC 3 cut(s) 253, 2343, 3436
SexAI ACCWGGT 1 cut(s) 2791
SfcI CTRYAG 6 cut(s) 12, 956, 1216, 2046, 2426, 3174
Sfr303I CCGCGG 1 cut(s) 4000
SgrBI CCGCGG 1 cut(s) 4000
SinI GGWCC 5 cut(s) 36, 1837, 2958, 3681, 3939
SmiMI CAYNNNNRTG 5 cut(s) 51, 487, 710, 1326, 1489
SmlI CTYRAG 2 cut(s) 284, 498
SmoI CTYRAG 2 cut(s) 284, 498
SpeI ACTAGT 1 cut(s) 4096
SphI GCATGC 2 cut(s) 56, 1383
SseBI AGGCCT 1 cut(s) 918
SsiI CCGC 4 cut(s) 428, 1577, 3997, 3999
SspI AATATT 2 cut(s) 2871, 3501
StuI AGGCCT 1 cut(s) 918
StyD4I CCNGG 6 cut(s) 252, 618, 2182, 2461, 2681, 2791
StyI CCWWGG 5 cut(s) 775, 1075, 1833, 2012, 2146
TaiI ACGT 4 cut(s) 173, 262, 1489, 2891
TaqI TCGA 5 cut(s) 1305, 1503, 2422, 2810, 3009
TaqII GACCGA 1 cut(s) 1856
TatI WGTACW 6 cut(s) 1191, 1521, 2740, 2948, 3603, 3991
TauI GCSGC 1 cut(s) 430
TscAI CASTG 8 cut(s) 131, 603, 1234, 2092, 2517, 3716, 4081, 4132
TseFI GTSAC 8 cut(s) 171, 1085, 2041, 2087, 2470, 2630, 3160, 3714
TseI GCWGC 8 cut(s) 11, 131, 615, 958, 1667, 2909, 2912, 3410
Tsp45I GTSAC 8 cut(s) 171, 1085, 2041, 2087, 2470, 2630, 3160, 3714
TspGWI ACGGA 2 cut(s) 1112, 3984
TspRI CASTG 8 cut(s) 131, 603, 1234, 2092, 2517, 3716, 4081, 4132
Van91I CCANNNNNTGG 3 cut(s) 1165, 3317, 3701
VpaK11BI GGWCC 5 cut(s) 36, 1837, 2958, 3681, 3939
XagI CCTNNNNNAGG 1 cut(s) 1160
XapI RAATTY 2 cut(s) 385, 2000
XbaI TCTAGA 2 cut(s) 1388, 1598
XceI RCATGY 5 cut(s) 56, 1331, 1383, 2160, 3342
XcmI CCANNNNNNNNNTGG 1 cut(s) 3318
XmiI GTMKAC 2 cut(s) 1071, 3579
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1398, 1846, 2742
ZrmI AGTACT 3 cut(s) 1193, 1523, 2742
Zsp2I ATGCAT 4 cut(s) 58, 1705, 2162, 3521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.