Rh2DG634900

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000472
Physical Location & Seq
Forward (+)
86316489 .. 86330568
14080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG634900.1

Sequence Viewer

Length: 4326 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTCTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAGGTTGAATTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCAGTTGTAACAAAGAGGAAGATGGTCATGAAGGTAAGACTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACACAGATATTTCGGTGCAAGTCTCAAGCATACAAACTAGAAATTCTAAAAGAAGTCAGTGGCATCATCAAGCCTTCAAGGATGACTCTATTACTTGGTCCTCCAAGCTGTGGGAAAACCACCTTATTACAGGCACTTGCAGGAAAACTTAACCACTCTCTCAAGGTTCAAGGAGAAATAACTTACAATGGTTATAAGATGAACGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGCTGCCAGGGTATTGGAAGCAGAGCCGATATTATGAAAGAAGTTGCTAGAAGAGAGAACCAAGCTGGTATTGTCCCAGAACCAGACATTGACGCTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTTTAATGACAGACTATATAATAAAGATCCTTGGGCTGGATATTTGTGCTGATACAATCGTAGGGGATGCAATGCAAAGAGGAATCTCCGGTGGTCAAAAGAAAAGGCTGACAACAGGTTCTATGATGATTGGCCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACTTTTCAAATTGTAACTTGTCTGCAGCAGTTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACTTTTCATCTGTTTGATGATATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCTAGTGACAATGTTGTGGAGTTCTTTCAGGAGTGTGGTTTCCGTAGCTCACCACGAAAAGGCATTTCTGACTTCCTCCAGGAGGCAAGAGTCCTTGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCACAAAGACCAACCCTATAGGTATGTCAGTGTTGATAAGTTCGTAAATATGTTTAAAGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAACTTTGCAAGCCTTTCGATCAATCTGAGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGCGAAACTCATTTGTTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAATAACAATGACAATCTTTTCACGTACATGGATGAAAATCGACGAGACCCATGCAAAGTACTACATGAGTTCTTTGTTTTATGCTCTACTTAGACTGCTCTGCATTGGAATTGCAGAGATATCAATGACTGCCTCTAGACTTGCAGTCTTCTATAAGCAAAGAGATTTCTACTTCTATCCTGCCTGGGCTTATTCTCTTCCAGCTGCCATTCTAAAGATTCCATTGTCATTGCTAGATGCATTTCTTTGGACAGCCCTCACTTATTATGTTATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTTTGTTCCTCCTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTTGGTCTATTCTCTTTAATAGTAATGTATCTATTTGGTGGCTTTATAATTCCAAAATCTTCTCTACCTGCTTGGTTGGCATGGGGATTTTGGGTTTCTCCACTGGCCTTTGCAGAACTAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTCACTATAGGCCAGCAAGCTCTAATTAACCATGGTCTAAACTTCAGTGACTACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGGTTTTCAACCTTGGATTCACATGCATACTCAGTTATTCAAAGTCTCCAGGTAGTTCTCGGACTATCATCTCTCATGAAAGATTCTCCCGTCTGAAGAAAAAGGATACTTTAAACAATTCCTGTCAAGAACATGAATTAACTTGTGGAGATACTGACATAACTTCTTCAGAATCTACAGATGTAGGCATGGTGTTACCTTTTGAGCCCATAAGTATATCATTTGAGAAACTGCATTACTTTATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGCGCATTTAGACCTGGGATTCTCACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACGACACTGATGGATGTTCTTTCAGGAAGAAAAACTAGTGGAATCATTGAAGGAGACATTAGAATTGGAGGGTACCCAAAATTCCAAGAAACATATGCCAGAATATCGGGGTATTGCGAGCAAAGTGACATACATTCTCCAGAGCTTACAGTAGAAGAATCAGTAGCATACTCAGCTTGGTTACGCTTGCCATCCCAGATTGATAGAAATACTAGAGCTGAGTTTGTGAAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGCAGTGGTATATCGAGTGAACAGCGTAAAAGGTTAACAATAGCAGTAGAGCTTGTTTCAAATCCATCAATAATATTCATGGATGAACCCACGTCTGGTTTAGATGCAAGAGCAGCTGCAATAATTATGCGAGTTGTGAAAAATATCGTCAGTACAGGGAGGACTATTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCATTCAACGAGCTTATTTTGATGAAAAGAGGAGGACAAGTAATATACTGTGGAGAGCTGGGTCAAGATTCAAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAATTACAACCCAGCAACATGGATGTTAGAAGTCACAAGTCCTTCTGCAGAAGCCAAACTGGCCTTAGATTTTGCTCAGCTTTATAGAGAATCACATCTATGCCAGAAGAACAATGATCTAGTTAGAGAACTCAGCTTTCCAGTACAAGGCTCAAAGGAATTGTATTTTCCTACTCACTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTATTGGAGAAATCCAAGATATAATCTGGGGCGATTGGCAATTACTGCTGCATCTTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAGAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATCGGTAACTGTTCCTCTGTTTTACCATTTGTCACTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCACGGGCATATTCTTTTTCACAGGTGATCATTGAACTTCCGTATATTTTACTTCAGGCAGTTATCTTTTCGACCATTACATATCCAACCATTGGTTTTCACTGGTCACTTTACAAAGTATTCTGGTATGTGTACGCTATGTTTTGTACACTGCTCTACTTCACTTACTTCGGTATATTGGTTGCTTCTGCGACCCCAACTTTCCAAGTGGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATCTAAACAAGGAAATTGTACTCCGCGGGGAAGAAAAGACCGTCAGTTCCTTCTTAGAAAGCATCTATGGATACAACTATGATGATCTAGGAATTGTAGGAACTGTTCTTCTTGCATATCCATTAGTTTTCGCATTTGCGTTTGCACTTGCTACTGAAAAACTCAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1441

Amino Acids

163.67

Weight (kDa)

7.97

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 355 9.4e-14 ABC transporter
ABC2_membrane PF01061 514 - 725 7.1e-42 ABC-2 type transporter
PDR_assoc PF08370 730 - 792 7.8e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 869 - 1021 5.5e-19 ABC transporter
ABC2_membrane PF01061 1166 - 1380 1e-55 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 669, 2081
AasI GACNNNNNNGTC 1 cut(s) 1436
Acc36I ACCTGC 1 cut(s) 2110
Acc65I GGTACC 2 cut(s) 1368, 2748
AccB1I GGYRCC 2 cut(s) 1368, 2748
AccB7I CCANNNNNTGG 3 cut(s) 584, 3488, 3872
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1230, 3750
AccII CGCG 1 cut(s) 4170
AciI CCGC 3 cut(s) 428, 4168, 4170
AclWI GGATC 5 cut(s) 77, 81, 925, 1359, 3673
AcsI RAATTY 4 cut(s) 385, 516, 2171, 2756
AfiI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 3062, 3446, 3488, 3872
AhdI GACNNNNNGTC 1 cut(s) 1778
AhlI ACTAGT 1 cut(s) 2711
AjiI CACGTC 1 cut(s) 3060
AjnI CCWGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
Alw21I GWGCWC 1 cut(s) 3607
Alw26I GTCTC 6 cut(s) 501, 1172, 1673, 2355, 2724, 3518
AlwI GGATC 5 cut(s) 77, 81, 925, 1359, 3673
AlwNI CAGNNNCTG 2 cut(s) 2033, 2566
Ama87I CYCGRG 1 cut(s) 4036
AoxI GGCC 7 cut(s) 876, 1036, 1075, 1238, 2139, 2221, 3360
ApeKI GCWGC 8 cut(s) 11, 131, 774, 1117, 1838, 3080, 3083, 3581
ApoI RAATTY 4 cut(s) 385, 516, 2171, 2756
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2913
Asp718I GGTACC 2 cut(s) 1368, 2748
AspLEI GCGC 2 cut(s) 2624, 3741
AspS9I GGNCC 6 cut(s) 36, 572, 1037, 1238, 2008, 4110
AsuHPI GGTGA 3 cut(s) 1281, 3650, 3817
AvaI CYCGRG 1 cut(s) 4036
AvaII GGWCC 4 cut(s) 36, 572, 2008, 4110
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanI GGYRCC 2 cut(s) 1368, 2748
BanII GRGCYC 2 cut(s) 253, 2514
BbsI GAAGAC 2 cut(s) 701, 1774
Bbv12I GWGCWC 1 cut(s) 3607
BbvI GCAGC 7 cut(s) 118, 761, 1129, 1825, 3070, 3092, 3568
BccI CCATC 8 cut(s) 194, 1204, 2299, 2647, 2680, 2875, 3040, 3486
BcgI CGANNNNNNTGC 6 cut(s) 1456, 1490, 1667, 1701, 3679, 3713
BciT130I CCWGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
BciVI GTATCC 2 cut(s) 2404, 4208
BclI TGATCA 1 cut(s) 3807
BcoDI GTCTC 6 cut(s) 501, 1172, 1673, 2355, 2724, 3518
BcuI ACTAGT 1 cut(s) 2711
BfmI CTRYAG 7 cut(s) 12, 1115, 1387, 2217, 2481, 2597, 3345
BfuAI ACCTGC 1 cut(s) 2110
BfuI GTATCC 2 cut(s) 2404, 4208
BglI GCCNNNNNGGC 1 cut(s) 3359
BglII AGATCT 1 cut(s) 4144
BisI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1839, 3081, 3084, 3582
BlpI GCTNAGC 1 cut(s) 3375
BlsI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1840, 3082, 3085, 3583
BmcAI AGTACT 3 cut(s) 1364, 1694, 2913
Bme1390I CCNGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
Bme18I GGWCC 4 cut(s) 36, 572, 2008, 4110
BmeRI GACNNNNNGTC 1 cut(s) 1778
BmeT110I CYCGRG 1 cut(s) 4036
BmgBI CACGTC 1 cut(s) 3060
BmgT120I GGNCC 6 cut(s) 36, 572, 1037, 1238, 2008, 4110
BmiI GGNNCC 4 cut(s) 250, 1370, 2750, 3285
BmrFI CCNGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
BmsI GCATC 9 cut(s) 65, 546, 961, 1861, 1975, 2009, 3061, 3593, 4215
BpiI GAAGAC 2 cut(s) 701, 1774
BpmI CTGGAG 4 cut(s) 163, 1301, 2337, 2799
Bpu1102I GCTNAGC 1 cut(s) 3375
BpuEI CTTGAG 3 cut(s) 269, 483, 620
BsaAI YACGTR 1 cut(s) 1658
BsaBI GATNNNNATC 1 cut(s) 1670
BsaI GGTCTC 1 cut(s) 1673
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 3198, 3228
Bsc4I CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 3062, 3446, 3488, 3872
Bse1I ACTGG 9 cut(s) 180, 762, 1370, 2142, 2623, 3363, 3440, 3887, 4094
Bse3DI GCAATG 4 cut(s) 981, 1626, 1862, 3748
Bse8I GATNNNNATC 1 cut(s) 1670
BseBI CCWGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
BseJI GATNNNNATC 1 cut(s) 1670
BseLI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 3062, 3446, 3488, 3872
BseMI GCAATG 4 cut(s) 981, 1626, 1862, 3748
BseNI ACTGG 9 cut(s) 180, 762, 1370, 2142, 2623, 3363, 3440, 3887, 4094
BseRI GAGGAG 2 cut(s) 3219, 3769
BseXI GCAGC 7 cut(s) 118, 761, 1129, 1825, 3070, 3092, 3568
BseYI CCCAGC 3 cut(s) 1039, 3232, 3310
Bsh1236I CGCG 1 cut(s) 4170
BshFI GGCC 7 cut(s) 878, 1038, 1077, 1240, 2141, 2223, 3362
BshNI GGYRCC 2 cut(s) 1368, 2748
BsiHKAI GWGCWC 1 cut(s) 3607
BsiHKCI CYCGRG 1 cut(s) 4036
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 1 cut(s) 830
BslI CCNNNNNNNGG 8 cut(s) 584, 940, 1298, 1321, 3062, 3446, 3488, 3872
BsmAI GTCTC 6 cut(s) 501, 1172, 1673, 2355, 2724, 3518
BsmFI GGGAC 1 cut(s) 830
BsmI GAATGC 3 cut(s) 162, 3176, 3657
BsnI GGCC 7 cut(s) 878, 1038, 1077, 1240, 2141, 2223, 3362
Bso31I GGTCTC 1 cut(s) 1673
BsoBI CYCGRG 1 cut(s) 4036
Bsp1286I GDGCHC 3 cut(s) 253, 2514, 3607
Bsp1407I TGTACA 1 cut(s) 3926
Bsp1720I GCTNAGC 1 cut(s) 3375
Bsp19I CCATGG 2 cut(s) 1234, 2242
BspACI CCGC 3 cut(s) 428, 4168, 4170
BspANI GGCC 7 cut(s) 878, 1038, 1077, 1240, 2141, 2223, 3362
BspFNI CGCG 1 cut(s) 4170
BspHI TCATGA 3 cut(s) 205, 1575, 2380
BspLI GGNNCC 4 cut(s) 250, 1370, 2750, 3285
BspMAI CTGCAG 3 cut(s) 16, 1119, 3349
BspMI ACCTGC 1 cut(s) 2110
BspPI GGATC 5 cut(s) 77, 81, 925, 1359, 3673
BspT107I GGYRCC 2 cut(s) 1368, 2748
BspTNI GGTCTC 1 cut(s) 1673
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 981, 1626, 1862, 3748
BsrGI TGTACA 1 cut(s) 3926
BsrI ACTGG 9 cut(s) 180, 762, 1370, 2142, 2623, 3363, 3440, 3887, 4094
BssNAI GTATAC 2 cut(s) 1231, 3751
BssT1I CCWWGG 6 cut(s) 934, 1234, 2004, 2183, 2242, 2317
Bst1107I GTATAC 2 cut(s) 1231, 3751
Bst2UI CCWGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
Bst6I CTCTTC 3 cut(s) 817, 1449, 1836
BstAPI GCANNNNNTGC 1 cut(s) 3578
BstAUI TGTACA 1 cut(s) 3926
BstBAI YACGTR 1 cut(s) 1658
BstC8I GCNNGC 7 cut(s) 54, 1469, 1552, 2225, 2229, 2795, 2864
BstDSI CCRYGG 3 cut(s) 1234, 2242, 4168
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstFNI CGCG 1 cut(s) 4170
BstHHI GCGC 2 cut(s) 2624, 3741
BstMAI GTCTC 6 cut(s) 501, 1172, 1673, 2355, 2724, 3518
BstMWI GCNNNNNNNGC 6 cut(s) 1083, 2111, 2849, 3080, 3359, 3578
BstNI CCWGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
BstNSI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3513
BstSCI CCNGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
BstSFI CTRYAG 7 cut(s) 12, 1115, 1387, 2217, 2481, 2597, 3345
BstUI CGCG 1 cut(s) 4170
BstV1I GCAGC 7 cut(s) 118, 761, 1129, 1825, 3070, 3092, 3568
BstV2I GAAGAC 2 cut(s) 701, 1774
BstX2I RGATCY 3 cut(s) 86, 930, 4144
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1150, 3318
BstYI RGATCY 3 cut(s) 86, 930, 4144
BstZ17I GTATAC 2 cut(s) 1231, 3751
BsuI GTATCC 2 cut(s) 2404, 4208
BsuRI GGCC 7 cut(s) 878, 1038, 1077, 1240, 2141, 2223, 3362
BtgI CCRYGG 3 cut(s) 1234, 2242, 4168
BtrI CACGTC 1 cut(s) 3060
BtsI GCAGTG 3 cut(s) 131, 2977, 3929
BveI ACCTGC 1 cut(s) 2110
Cac8I GCNNGC 7 cut(s) 54, 1469, 1552, 2225, 2229, 2795, 2864
CaiI CAGNNNCTG 2 cut(s) 2033, 2566
CciI TCATGA 3 cut(s) 205, 1575, 2380
CfoI GCGC 2 cut(s) 2624, 3741
Cfr13I GGNCC 6 cut(s) 36, 572, 1037, 1238, 2008, 4110
Cfr42I CCGCGG 1 cut(s) 4171
CseI GACGC 1 cut(s) 872
CsiI ACCWGGT 1 cut(s) 2962
DraI TTTAAA 3 cut(s) 1426, 2418, 3505
DrdI GACNNNNNNGTC 1 cut(s) 1436
DriI GACNNNNNGTC 1 cut(s) 1778
DseDI GACNNNNNNGTC 1 cut(s) 1436
Eam1104I CTCTTC 3 cut(s) 817, 1449, 1836
Eam1105I GACNNNNNGTC 1 cut(s) 1778
EarI CTCTTC 3 cut(s) 817, 1449, 1836
Eco130I CCWWGG 6 cut(s) 934, 1234, 2004, 2183, 2242, 2317
Eco147I AGGCCT 1 cut(s) 1077
Eco24I GRGCYC 2 cut(s) 253, 2514
Eco31I GGTCTC 1 cut(s) 1673
Eco32I GATATC 3 cut(s) 1068, 1755, 2277
Eco47I GGWCC 4 cut(s) 36, 572, 2008, 4110
Eco88I CYCGRG 1 cut(s) 4036
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
EcoRV GATATC 3 cut(s) 1068, 1755, 2277
EcoT14I CCWWGG 6 cut(s) 934, 1234, 2004, 2183, 2242, 2317
EcoT22I ATGCAT 4 cut(s) 58, 1876, 2333, 3692
EcoT38I GRGCYC 2 cut(s) 253, 2514
ErhI CCWWGG 6 cut(s) 934, 1234, 2004, 2183, 2242, 2317
FalI AAGNNNNNCTT 6 cut(s) 1446, 1478, 1539, 1571, 2898, 2930
FaqI GGGAC 1 cut(s) 830
FauI CCCGC 1 cut(s) 4163
FauNDI CATATG 1 cut(s) 2770
FbaI TGATCA 1 cut(s) 3807
FblI GTMKAC 2 cut(s) 1230, 3750
Fnu4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1839, 3081, 3084, 3582
FriOI GRGCYC 2 cut(s) 253, 2514
Fsp4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1839, 3081, 3084, 3582
GlaI GCGC 2 cut(s) 2623, 3740
GluI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1839, 3081, 3084, 3582
GsaI CCCAGC 3 cut(s) 1043, 3236, 3314
GsuI CTGGAG 4 cut(s) 163, 1301, 2337, 2799
HaeIII GGCC 7 cut(s) 878, 1038, 1077, 1240, 2141, 2223, 3362
HapII CCGG 1 cut(s) 993
HgaI GACGC 1 cut(s) 872
HhaI GCGC 2 cut(s) 2624, 3741
Hin6I GCGC 2 cut(s) 2622, 3739
HinP1I GCGC 2 cut(s) 2622, 3739
HincII GTYRAC 2 cut(s) 1125, 3003
HindII GTYRAC 2 cut(s) 1125, 3003
HindIII AAGCTT 3 cut(s) 457, 1448, 3251
HpaI GTTAAC 1 cut(s) 3003
HpaII CCGG 1 cut(s) 993
HphI GGTGA 3 cut(s) 1281, 3650, 3817
Hpy166II GTNNAC 8 cut(s) 1125, 1231, 2987, 3003, 3641, 3751, 3913, 3929
Hpy8I GTNNAC 8 cut(s) 1125, 1231, 2987, 3003, 3641, 3751, 3913, 3929
Hpy99I CGWCG 2 cut(s) 264, 1679
HpyCH4IV ACGT 4 cut(s) 170, 259, 1657, 3059
HpyF10VI GCNNNNNNNGC 6 cut(s) 1083, 2111, 2849, 3080, 3359, 3578
HpySE526I ACGT 4 cut(s) 170, 259, 1657, 3059
HspAI GCGC 2 cut(s) 2622, 3739
KpnI GGTACC 2 cut(s) 1372, 2752
Ksp22I TGATCA 1 cut(s) 3807
KspAI GTTAAC 1 cut(s) 3003
KspI CCGCGG 1 cut(s) 4171
LmnI GCTCC 8 cut(s) 248, 435, 1091, 2185, 2285, 2666, 3496, 3602
Lsp1109I GCAGC 7 cut(s) 118, 761, 1129, 1825, 3070, 3092, 3568
LweI GCATC 9 cut(s) 65, 546, 961, 1861, 1975, 2009, 3061, 3593, 4215
MabI ACCWGGT 1 cut(s) 2962
MaeII ACGT 4 cut(s) 170, 259, 1657, 3059
MbiI CCGCTC 1 cut(s) 430
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 3 cut(s) 86, 930, 4144
MhlI GDGCHC 3 cut(s) 253, 2514, 3607
MlyI GAGTC 3 cut(s) 553, 1120, 1338
MmeI TCCRAC 2 cut(s) 1420, 3890
Mph1103I ATGCAT 4 cut(s) 58, 1876, 2333, 3692
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2913
MslI CAYNNNNRTG 4 cut(s) 51, 1497, 1660, 3397
MspA1I CMGCKG 3 cut(s) 1838, 3083, 4170
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 3 cut(s) 162, 3176, 3657
MvaI CCWGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
MvnI CGCG 1 cut(s) 4170
MwoI GCNNNNNNNGC 6 cut(s) 1083, 2111, 2849, 3080, 3359, 3578
NcoI CCATGG 2 cut(s) 1234, 2242
NdeI CATATG 1 cut(s) 2770
NlaIV GGNNCC 4 cut(s) 250, 1370, 2750, 3285
NmuCI GTSAC 8 cut(s) 171, 1244, 2212, 2258, 2801, 3331, 3727, 3885
NsiI ATGCAT 4 cut(s) 58, 1876, 2333, 3692
NspI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3513
PaeI GCATGC 2 cut(s) 56, 1554
PagI TCATGA 3 cut(s) 205, 1575, 2380
PceI AGGCCT 1 cut(s) 1077
PctI GAATGC 3 cut(s) 162, 3176, 3657
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2913
PflMI CCANNNNNTGG 3 cut(s) 584, 3488, 3872
PfoI TCCNGGA 1 cut(s) 1317
PkrI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1840, 3082, 3085, 3583
PleI GAGTC 3 cut(s) 553, 1120, 1337
PpsI GAGTC 3 cut(s) 553, 1120, 1337
Ppu21I YACGTR 1 cut(s) 1658
PpuMI RGGWCCY 1 cut(s) 36
PsiI TTATAA 2 cut(s) 669, 2081
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
PspFI CCCAGC 3 cut(s) 1039, 3232, 3310
PspGI CCWGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
PspN4I GGNNCC 4 cut(s) 250, 1370, 2750, 3285
PspPI GGNCC 6 cut(s) 36, 572, 1037, 1238, 2008, 4110
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 2 cut(s) 4233, 4265
PstI CTGCAG 3 cut(s) 16, 1119, 3349
PstNI CAGNNNCTG 2 cut(s) 2033, 2566
PsuI RGATCY 3 cut(s) 86, 930, 4144
PvuII CAGCTG 2 cut(s) 1838, 3083
RseI CAYNNNNRTG 4 cut(s) 51, 1497, 1660, 3397
SacII CCGCGG 1 cut(s) 4171
SatI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1839, 3081, 3084, 3582
Sau96I GGNCC 6 cut(s) 36, 572, 1037, 1238, 2008, 4110
ScaI AGTACT 3 cut(s) 1364, 1694, 2913
SchI GAGTC 3 cut(s) 553, 1120, 1338
ScrFI CCNGG 7 cut(s) 254, 779, 1319, 1819, 2355, 2634, 2964
SduI GDGCHC 3 cut(s) 253, 2514, 3607
SexAI ACCWGGT 1 cut(s) 2962
SfaNI GCATC 9 cut(s) 65, 546, 961, 1861, 1975, 2009, 3061, 3593, 4215
SfcI CTRYAG 7 cut(s) 12, 1115, 1387, 2217, 2481, 2597, 3345
Sfr303I CCGCGG 1 cut(s) 4171
SgrBI CCGCGG 1 cut(s) 4171
SinI GGWCC 4 cut(s) 36, 572, 2008, 4110
SmiMI CAYNNNNRTG 4 cut(s) 51, 1497, 1660, 3397
SmlI CTYRAG 3 cut(s) 284, 498, 635
SmoI CTYRAG 3 cut(s) 284, 498, 635
SpeI ACTAGT 1 cut(s) 2711
SphI GCATGC 2 cut(s) 56, 1554
SseBI AGGCCT 1 cut(s) 1077
SsiI CCGC 3 cut(s) 428, 4168, 4170
SspI AATATT 2 cut(s) 3042, 3672
StuI AGGCCT 1 cut(s) 1077
StyD4I CCNGG 7 cut(s) 252, 777, 1317, 1817, 2353, 2632, 2962
StyI CCWWGG 6 cut(s) 934, 1234, 2004, 2183, 2242, 2317
TaiI ACGT 4 cut(s) 173, 262, 1660, 3062
TaqI TCGA 5 cut(s) 1476, 1674, 2593, 2981, 3851
TatI WGTACW 8 cut(s) 1362, 1692, 2911, 3119, 3442, 3774, 3926, 4162
TauI GCSGC 1 cut(s) 430
TseFI GTSAC 8 cut(s) 171, 1244, 2212, 2258, 2801, 3331, 3727, 3885
TseI GCWGC 8 cut(s) 11, 131, 774, 1117, 1838, 3080, 3083, 3581
Tsp45I GTSAC 8 cut(s) 171, 1244, 2212, 2258, 2801, 3331, 3727, 3885
TspGWI ACGGA 3 cut(s) 1271, 3810, 4155
Van91I CCANNNNNTGG 3 cut(s) 584, 3488, 3872
VpaK11BI GGWCC 4 cut(s) 36, 572, 2008, 4110
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 4 cut(s) 385, 516, 2171, 2756
XbaI TCTAGA 2 cut(s) 1559, 1769
XceI RCATGY 5 cut(s) 56, 1502, 1554, 2331, 3513
XcmI CCANNNNNNNNNTGG 1 cut(s) 3489
XmiI GTMKAC 2 cut(s) 1230, 3750
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1569, 2017, 2913
ZrmI AGTACT 3 cut(s) 1364, 1694, 2913
Zsp2I ATGCAT 4 cut(s) 58, 1876, 2333, 3692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.