RchiOBHm_Chr2g0169411

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000472
Physical Location & Seq
Forward (+)
83620389 .. 83626086
5698 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53700

Sequence Viewer

Length: 3099 bp
ATGGCAGAAGGAAAAGTTGTATACCATGGGCCTAGTGATAATGTGGTAGAGTTCTTTGAGAACTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGTGGTTTCCCAAAAGGATCAAGCAAAGTACTGGTACGATGAAGACCAACCCCATAGTTATGTTACTGTCGACAACTTTGTAGATATGTTCAAGGACTTCCATGTTGGAAAGAAGCTCGATGAGGAACTTCAGGAGCCTTTCAATCGATCCGAGTTCCATAAAGATGCTTTGTCATTTAACATTTACTCATTGACAAAATGGGAACTCTTCAAAGCATGCCTTGCTAGAGAATGGCTTCTGATGAAGCGCAACTCGTTTGTCCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCGCTAGTAACAATGACAGTGTTTCTTCGTACGTGGATGAAAGTCGATGAGATCCATTCAAATTTCTTTATGAGTTCTTTGTTCTATGCTCTACTTAGATTGGTGTGCAATGGCACTGCAGAGTTATCATTGACTGCTTCCAGACTTGCAGTGTTTTACAAGCAAAGAGACTTTTATTTCTATCCTGCGTGGGCTTATTCAGTTCCATCTGCCATCCTAAAGATTCCATTTTCATTGATAGACGCTTTTCTATGGACAGCACTTACTTATTATGTCATCGGTTACAGTCCTGAACCCGAGAGGTTCTTCAAGCAATTCATTCTTTTATTCCTTGTCCATCAAGTAGCAATATCACTGTTCCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTCTTGCAGCCCCTGTTGGTCTTTTCTCCTTAATTGTAATGTTTCTATTTGGCGGCTTCATAATTCCAAAAACTTCTCTACCTAGCTGGCTGGAATGGGGCTTTTGGCTTTCCCCATTGGTATATGCAGAAATTGGTGCTACAGGAAACGAATTCCATGCTCCAAGGTGGCAAAAGCTCTCATCTTCAAATATCACAATAGGTCAGCAAGCTCTAAAAGACAGTGGTCTTGATTTCAGTGAATACTTCTATTGGATATCTATAGGAGCTTTACTTGGATTTTGGTTGGTTTTCAACCTAGGTTTCACCTGTGCTCTCAGTTATTTAAAGTCTCCAGGGAGTTCTCGAACAATCATTTCTCATGAAAGGTTGTCCCGTCTGAAGGAAAAGGAAAGTCTAAACAATTCCCCTCGAAAAAAAAAATTAACTCGTATAGAAACTCGAATAAGAGTTGAAGATTCTACAAATATAGGGGTCTTACCTTTTGAACCCTTGACTATATCATTTGAGAAGGTGCAATATTTTGTCGACTTACCCCAGAAACTGAGAGAGCAAGGTGTTCCACCAAAACGACTACAACTTCTTCAAGATATAACTGGTGCATTTAGACCTGGAGTTCTTACAGCACTTATGGGTGTTAGTGGAGCTGGAAAGACAACACTGATGGATGTTCTTTCAGGAAGGAAAACTGGTGGAATTATTGAAGGAGACATTAGAATTGGAGGACACCCAAAAGTCCAAGAAACATATGCCAGAATATCTGGGTATTGCGAGCAAAGTGACATACATTCCCCACAGATAACAGTAGAAGAGTCGGTAACATACTCAGCTTGGTTACGTTTGCCAGCACAGGTTGATAGAACAGTCAGATCTGAATTTGTGAGAGAAGTTCTACAAATGATCGAGCTTGATGAAATCAAGGACGAACTAGTGGGCGTACCTGGTAGGGGTATATCGACTGAACAGCGCAAACGGCTTACTATAGCAGTGGAGCTTGTTTCAAATCCATCCATAATGTTCATGGATGAACCCACCTCTGGTTTAGATGCCAGAGCAGCTGCAATAGTTATGCGAGTGGTCAAAAACATTGTCAGCACTAGGAGGACTGTTGTATGCACCATTCACCAGCCCAGTATTGACATCTTTGAAGCATTCGATGAGCTTATTTTAATGAAAATAGGAGGACAGCTAATCTACAGTGGAGCGCTGGGTCAAAATTCAAGCAAGCTTATTGAATACTTTGAGCGTATTCCTGGGGTTCCAAACATCAAAGAAAATTACAACCCCGCAACATGGATGTTAGAGGTCACCGGTCCTTCTGCAGAAGCTAAACTTGGCTTAGATTTTGCTCAACTCTATAGAGAATCACATCTATGCCGGGAGAACGATGACCTAGTTAGAGAACTCAGCTGTCCAGCAGAAGGGGCAAAGAAACTACATTTTTCTACTCGCTTTGCACAAAATGAATGGGAGCAATTTAAAGCCTGCCTCTGGAAGCAACATCTCTCCTACTGGAGAAATCCACAATATAACCTGGGCAGATTGACAATTACTGCTGCATCCTCTTTGTTATTCGGAGCACTTCTTTGGCAGAAAGGGCAGACGGTAGATAATGAACAGGATTTTTTCAACATTCTGGGATCAATGTTTGTTTTACTGCAATTCATGGGAATAGGAAACTGCTCCTCTGTTTTACCCTGTATTGCTTCAGAGCGGAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCCTATTCATTTGCGCAGGTGATCATTGAAATTCCATACATATTTCTTCAGGCAGTATTGTTTTTGGCAATCACATATCCAACCATAAATTTCCACTGGACACTTTACCAAGTGTTTTGGTATGTCTATGCCATGTTTTGTACACTGCTCTACTTCAGTTACTTCGGCATATTGCTTGCAGCTTTGACCCCAACATTCCCAGTGGCTATGGTCCTAGCCAGTTTCTGTTACACCATGTTCAACTTATTCTCAGGTTTCCTCGTGCCTGGACCGAAAATTCCTAAATGGTGGGTTTGGGGTTATTGGATTTGCCCTGTAGCATGGTCCTTAAACGGTCTTCTCACTTCACAGTATGGAGATCAAAACAAGGTGATAGTAGTACATGGGGAGAAAAAGACCATCAGTGACTTCTTAGAAAGTATTCATGGGTATTACTATAATGAACTAAAATATGTCGCAATTGTTCTTTTGGCATTTCCACTAGTTTTCGCTTTTGCTTTTGGAGTTGCTACAGAGAAGCTAAACTTCCAGAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1032

Amino Acids

117.95

Weight (kDa)

8.01

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane PF01061 107 - 318 1.8e-44 ABC-2 type transporter
PDR_assoc PF08370 323 - 385 9.5e-22 Plant PDR ABC transporter associated
ABC_tran PF00005 461 - 612 2.1e-20 ABC transporter
ABC2_membrane PF01061 757 - 971 1.2e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 806 - 1005 2.9e-06 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2566
Acc16I TGCGCA 1 cut(s) 2574
Acc36I ACCTGC 1 cut(s) 2566
AccB7I CCANNNNNTGG 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 2512
AccI GTMKAC 4 cut(s) 21, 183, 1326, 2523
AciI CCGC 3 cut(s) 852, 2085, 2512
AclWI GGATC 4 cut(s) 138, 255, 454, 2446
AcsI RAATTY 7 cut(s) 469, 950, 1673, 2014, 2589, 2647, 2835
AcuI CTGAAG 5 cut(s) 227, 1199, 2490, 2591, 2698
AfaI GTAC 7 cut(s) 143, 149, 439, 1737, 2549, 2701, 2940
AfeI AGCGCT 1 cut(s) 2004
AfiI CCNNNNNNNGG 9 cut(s) 89, 112, 115, 1180, 1745, 1835, 2091, 2219, 2289
AgeI ACCGGT 1 cut(s) 2108
AhlI ACTAGT 2 cut(s) 1726, 3040
AjnI CCWGG 6 cut(s) 1132, 1408, 1738, 2050, 2331, 2824
AjuI GAANNNNNNNTTGG 2 cut(s) 2115, 2147
Alw21I GWGCWC 2 cut(s) 1114, 2380
Alw26I GTCTC 3 cut(s) 570, 1134, 1500
AlwI GGATC 4 cut(s) 138, 255, 454, 2446
AlwNI CAGNNNCTG 3 cut(s) 812, 1342, 2784
Ama87I CYCGRG 1 cut(s) 704
Aor51HI AGCGCT 1 cut(s) 2004
AoxI GGCC 2 cut(s) 29, 2559
ApeKI GCWGC 5 cut(s) 806, 1853, 1856, 2354, 2738
ApoI RAATTY 7 cut(s) 469, 950, 1673, 2014, 2589, 2647, 2835
ArsI GACNNNNNNTTYG 2 cut(s) 1872, 1904
AsiGI ACCGGT 1 cut(s) 2108
Asp700I GAANNNNTTC 3 cut(s) 348, 796, 2979
AspA2I CCTAGG 1 cut(s) 1096
AspLEI GCGC 5 cut(s) 363, 412, 1767, 2005, 2575
AspS9I GGNCC 7 cut(s) 29, 787, 2111, 2559, 2770, 2828, 2883
AsuC2I CCSGG 1 cut(s) 2177
AsuHPI GGTGA 5 cut(s) 1096, 1913, 2098, 2590, 2941
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 5 cut(s) 787, 2111, 2770, 2828, 2883
AvrII CCTAGG 1 cut(s) 1096
BauI CACGAG 1 cut(s) 2819
BbsI GAAGAC 2 cut(s) 162, 2888
Bbv12I GWGCWC 2 cut(s) 1114, 2380
BbvI GCAGC 5 cut(s) 818, 1843, 1865, 2341, 2750
BccI CCATC 6 cut(s) 622, 629, 753, 1456, 1813, 2966
BceAI ACGGC 1 cut(s) 1787
BcgI CGANNNNNNTGC 2 cut(s) 938, 972
BciT130I CCWGG 6 cut(s) 1134, 1410, 1740, 2052, 2333, 2826
BclI TGATCA 1 cut(s) 2580
BcnI CCSGG 1 cut(s) 2177
BcoDI GTCTC 3 cut(s) 570, 1134, 1500
BcuI ACTAGT 2 cut(s) 1726, 3040
BfmI CTRYAG 9 cut(s) 525, 939, 1059, 1779, 1993, 2118, 2155, 2874, 3069
BfoI RGCGCY 1 cut(s) 2006
BfuAI ACCTGC 1 cut(s) 2566
BglII AGATCT 1 cut(s) 1667
BisI GCNGC 6 cut(s) 807, 853, 1854, 1857, 2355, 2739
BlnI CCTAGG 1 cut(s) 1096
BlsI GCNGC 6 cut(s) 808, 854, 1855, 1858, 2356, 2740
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 7 cut(s) 1134, 1410, 1740, 2052, 2177, 2333, 2826
Bme18I GGWCC 5 cut(s) 787, 2111, 2770, 2828, 2883
BmeT110I CYCGRG 1 cut(s) 704
BmgT120I GGNCC 7 cut(s) 29, 787, 2111, 2559, 2770, 2828, 2883
BmiI GGNNCC 2 cut(s) 249, 2058
BmrFI CCNGG 7 cut(s) 1134, 1410, 1740, 2052, 2177, 2333, 2826
BmrI ACTGGG 2 cut(s) 1923, 2753
BmsI GCATC 4 cut(s) 268, 788, 1834, 2366
BmuI ACTGGG 2 cut(s) 1923, 2753
BoxI GACNNNNGTC 1 cut(s) 1023
BpiI GAAGAC 2 cut(s) 162, 2888
BpmI CTGGAG 3 cut(s) 1116, 1431, 2332
BpuMI CCSGG 1 cut(s) 2177
Bsa29I ATCGAT 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 441
BsaJI CCNNGG 7 cut(s) 25, 783, 962, 1096, 1133, 2051, 2332
BsaWI WCCGGW 1 cut(s) 2108
Bsc4I CCNNNNNNNGG 9 cut(s) 89, 112, 115, 1180, 1745, 1835, 2091, 2219, 2289
Bse118I RCCGGY 1 cut(s) 2108
Bse1I ACTGG 8 cut(s) 149, 1399, 1492, 1929, 2315, 2660, 2759, 2778
Bse3DI GCAATG 2 cut(s) 405, 523
BseBI CCWGG 6 cut(s) 1134, 1410, 1740, 2052, 2333, 2826
BseCI ATCGAT 1 cut(s) 259
BseDI CCNNGG 7 cut(s) 25, 783, 962, 1096, 1133, 2051, 2332
BseGI GGATG 8 cut(s) 450, 621, 779, 1471, 1805, 1828, 2100, 2357
BseLI CCNNNNNNNGG 9 cut(s) 89, 112, 115, 1180, 1745, 1835, 2091, 2219, 2289
BseMI GCAATG 2 cut(s) 405, 523
BseMII CTCAG 5 cut(s) 1129, 1334, 1638, 2218, 2823
BseNI ACTGG 8 cut(s) 149, 1399, 1492, 1929, 2315, 2660, 2759, 2778
BseRI GAGGAG 2 cut(s) 2473, 2542
BseXI GCAGC 5 cut(s) 818, 1843, 1865, 2341, 2750
BseYI CCCAGC 1 cut(s) 2005
BshFI GGCC 2 cut(s) 31, 2561
BshTI ACCGGT 1 cut(s) 2108
BshVI ATCGAT 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 1114, 2380
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 2 cut(s) 2109, 2176
BsiWI CGTACG 1 cut(s) 437
BslFI GGGAC 1 cut(s) 1156
BslI CCNNNNNNNGG 9 cut(s) 89, 112, 115, 1180, 1745, 1835, 2091, 2219, 2289
BsmAI GTCTC 3 cut(s) 570, 1134, 1500
BsmFI GGGAC 1 cut(s) 1156
BsmI GAATGC 1 cut(s) 1949
BsnI GGCC 2 cut(s) 31, 2561
BsoBI CYCGRG 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 1114, 2380
Bsp1407I TGTACA 1 cut(s) 2699
Bsp143I GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 3 cut(s) 852, 2085, 2512
BspANI GGCC 2 cut(s) 31, 2561
BspCNI CTCAG 5 cut(s) 1128, 1335, 1637, 2217, 2822
BspDI ATCGAT 1 cut(s) 259
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 2 cut(s) 249, 2058
BspMAI CTGCAG 2 cut(s) 529, 2122
BspMI ACCTGC 1 cut(s) 2566
BspPI GGATC 4 cut(s) 138, 255, 454, 2446
BsrBI CCGCTC 1 cut(s) 2512
BsrDI GCAATG 2 cut(s) 405, 523
BsrFI RCCGGY 1 cut(s) 2108
BsrGI TGTACA 1 cut(s) 2699
BsrI ACTGG 8 cut(s) 149, 1399, 1492, 1929, 2315, 2660, 2759, 2778
BssAI RCCGGY 1 cut(s) 2108
BssECI CCNNGG 7 cut(s) 25, 783, 962, 1096, 1133, 2051, 2332
BssMI GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
BssNAI GTATAC 2 cut(s) 22, 2524
BssSI CACGAG 1 cut(s) 2819
BssT1I CCWWGG 4 cut(s) 25, 783, 962, 1096
Bst1107I GTATAC 2 cut(s) 22, 2524
Bst2BI CACGAG 1 cut(s) 2819
Bst2UI CCWGG 6 cut(s) 1134, 1410, 1740, 2052, 2333, 2826
Bst6I CTCTTC 2 cut(s) 326, 1602
BstAPI GCANNNNNTGC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 2699
BstBAI YACGTR 1 cut(s) 441
BstC8I GCNNGC 8 cut(s) 331, 887, 1008, 1571, 1644, 2024, 2284, 2736
BstDEI CTNAG 8 cut(s) 503, 1115, 1343, 1624, 2137, 2204, 2809, 2971
BstDSI CCRYGG 1 cut(s) 25
BstEII GGTNACC 1 cut(s) 2104
BstENI CCTNNNNNAGG 1 cut(s) 110
BstF5I GGATG 8 cut(s) 450, 621, 779, 1471, 1805, 1828, 2100, 2357
BstH2I RGCGCY 1 cut(s) 2006
BstHHI GCGC 5 cut(s) 363, 412, 1767, 2005, 2575
BstKTI GATC 8 cut(s) 133, 263, 462, 1670, 1701, 2441, 2583, 2920
BstMAI GTCTC 3 cut(s) 570, 1134, 1500
BstMBI GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
BstMWI GCNNNNNNNGC 5 cut(s) 335, 1771, 1853, 2222, 2395
BstNI CCWGG 6 cut(s) 1134, 1410, 1740, 2052, 2333, 2826
BstNSI RCATGY 1 cut(s) 333
BstPAI GACNNNNGTC 1 cut(s) 1023
BstPI GGTNACC 1 cut(s) 2104
BstSCI CCNGG 7 cut(s) 1132, 1408, 1738, 2050, 2175, 2331, 2824
BstSFI CTRYAG 9 cut(s) 525, 939, 1059, 1779, 1993, 2118, 2155, 2874, 3069
BstV1I GCAGC 5 cut(s) 818, 1843, 1865, 2341, 2750
BstV2I GAAGAC 2 cut(s) 162, 2888
BstX2I RGATCY 2 cut(s) 459, 1667
BstYI RGATCY 2 cut(s) 459, 1667
BstZ17I GTATAC 2 cut(s) 22, 2524
Bsu15I ATCGAT 1 cut(s) 259
BsuRI GGCC 2 cut(s) 31, 2561
BsuTUI ATCGAT 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 8 cut(s) 450, 621, 779, 1471, 1805, 1828, 2100, 2357
BtsI GCAGTG 4 cut(s) 522, 564, 1791, 2702
BveI ACCTGC 1 cut(s) 2566
Cac8I GCNNGC 8 cut(s) 331, 887, 1008, 1571, 1644, 2024, 2284, 2736
CaiI CAGNNNCTG 3 cut(s) 812, 1342, 2784
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 5 cut(s) 363, 412, 1767, 2005, 2575
Cfr10I RCCGGY 1 cut(s) 2108
Cfr13I GGNCC 7 cut(s) 29, 787, 2111, 2559, 2770, 2828, 2883
ClaI ATCGAT 1 cut(s) 259
CseI GACGC 1 cut(s) 659
CsiI ACCWGGT 1 cut(s) 1738
Csp6I GTAC 7 cut(s) 142, 148, 438, 1736, 2548, 2700, 2939
CspAI ACCGGT 1 cut(s) 2108
CviQI GTAC 7 cut(s) 142, 148, 438, 1736, 2548, 2700, 2939
DdeI CTNAG 8 cut(s) 503, 1115, 1343, 1624, 2137, 2204, 2809, 2971
DpnI GATC 8 cut(s) 132, 262, 461, 1669, 1700, 2440, 2582, 2919
DpnII GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
DraI TTTAAA 2 cut(s) 1125, 2278
Eam1104I CTCTTC 2 cut(s) 326, 1602
EarI CTCTTC 2 cut(s) 326, 1602
Eco130I CCWWGG 4 cut(s) 25, 783, 962, 1096
Eco32I GATATC 1 cut(s) 1056
Eco47I GGWCC 5 cut(s) 787, 2111, 2770, 2828, 2883
Eco47III AGCGCT 1 cut(s) 2004
Eco57I CTGAAG 5 cut(s) 227, 1199, 2490, 2591, 2698
Eco88I CYCGRG 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 2104
EcoNI CCTNNNNNAGG 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 2104
EcoRI GAATTC 1 cut(s) 950
EcoRII CCWGG 6 cut(s) 1132, 1408, 1738, 2050, 2331, 2824
EcoRV GATATC 1 cut(s) 1056
EcoT14I CCWWGG 4 cut(s) 25, 783, 962, 1096
ErhI CCWWGG 4 cut(s) 25, 783, 962, 1096
FalI AAGNNNNNCTT 5 cut(s) 318, 350, 2115, 2147, 3068
FaqI GGGAC 1 cut(s) 1156
FauI CCCGC 1 cut(s) 2092
FauNDI CATATG 1 cut(s) 1546
FbaI TGATCA 1 cut(s) 2580
FblI GTMKAC 4 cut(s) 21, 183, 1326, 2523
Fnu4HI GCNGC 6 cut(s) 807, 853, 1854, 1857, 2355, 2739
FokI GGATG 8 cut(s) 457, 608, 766, 1478, 1792, 1835, 2107, 2344
Fsp4HI GCNGC 6 cut(s) 807, 853, 1854, 1857, 2355, 2739
FspI TGCGCA 1 cut(s) 2574
GlaI GCGC 5 cut(s) 362, 411, 1766, 2004, 2574
GluI GCNGC 6 cut(s) 807, 853, 1854, 1857, 2355, 2739
GsaI CCCAGC 1 cut(s) 2009
GsuI CTGGAG 3 cut(s) 1116, 1431, 2332
HaeII RGCGCY 1 cut(s) 2006
HaeIII GGCC 2 cut(s) 31, 2561
HapII CCGG 2 cut(s) 2109, 2176
HgaI GACGC 1 cut(s) 659
HhaI GCGC 5 cut(s) 363, 412, 1767, 2005, 2575
Hin6I GCGC 5 cut(s) 361, 410, 1765, 2003, 2573
HinP1I GCGC 5 cut(s) 361, 410, 1765, 2003, 2573
HincII GTYRAC 2 cut(s) 184, 1327
HindII GTYRAC 2 cut(s) 184, 1327
HindIII AAGCTT 1 cut(s) 2024
HinfI GANTC 4 cut(s) 631, 1256, 1610, 2162
HpaII CCGG 2 cut(s) 2109, 2176
HphI GGTGA 5 cut(s) 1096, 1913, 2098, 2590, 2941
Hpy166II GTNNAC 5 cut(s) 22, 184, 1327, 2524, 2702
Hpy188I TCNGA 9 cut(s) 100, 265, 354, 791, 1179, 1667, 1672, 2375, 2509
Hpy8I GTNNAC 5 cut(s) 22, 184, 1327, 2524, 2702
HpyAV CCTTC 7 cut(s) 807, 1174, 1303, 1473, 1496, 2124, 2213
HpyCH4IV ACGT 2 cut(s) 440, 1636
HpyF10VI GCNNNNNNNGC 5 cut(s) 335, 1771, 1853, 2222, 2395
HpyF3I CTNAG 8 cut(s) 503, 1115, 1343, 1624, 2137, 2204, 2809, 2971
HpySE526I ACGT 2 cut(s) 440, 1636
HspAI GCGC 5 cut(s) 361, 410, 1765, 2003, 2573
Ksp22I TGATCA 1 cut(s) 2580
Kzo9I GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
LmnI GCTCC 9 cut(s) 247, 964, 1064, 1442, 1789, 2000, 2269, 2375, 2486
Lsp1109I GCAGC 5 cut(s) 818, 1843, 1865, 2341, 2750
LweI GCATC 4 cut(s) 268, 788, 1834, 2366
MabI ACCWGGT 1 cut(s) 1738
MaeII ACGT 2 cut(s) 440, 1636
MalI GATC 8 cut(s) 132, 262, 461, 1669, 1700, 2440, 2582, 2919
MbiI CCGCTC 1 cut(s) 2512
MboI GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
MfeI CAATTG 1 cut(s) 3018
MflI RGATCY 2 cut(s) 459, 1667
MhlI GDGCHC 2 cut(s) 1114, 2380
MlyI GAGTC 1 cut(s) 1619
MmeI TCCRAC 2 cut(s) 199, 2663
MroXI GAANNNNTTC 3 cut(s) 348, 796, 2979
MseI TTAA 7 cut(s) 291, 830, 1124, 1223, 1967, 2277, 2888
MslI CAYNNNNRTG 3 cut(s) 171, 276, 2170
MspA1I CMGCKG 2 cut(s) 1856, 2208
MspI CCGG 2 cut(s) 2109, 2176
MspR9I CCNGG 7 cut(s) 1134, 1410, 1740, 2052, 2177, 2333, 2826
MunI CAATTG 1 cut(s) 3018
Mva1269I GAATGC 1 cut(s) 1949
MvaI CCWGG 6 cut(s) 1134, 1410, 1740, 2052, 2333, 2826
MwoI GCNNNNNNNGC 5 cut(s) 335, 1771, 1853, 2222, 2395
NciI CCSGG 1 cut(s) 2177
NcoI CCATGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 1546
NdeII GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
NlaIV GGNNCC 2 cut(s) 249, 2058
NmuCI GTSAC 3 cut(s) 1577, 2104, 2963
NsbI TGCGCA 1 cut(s) 2574
NspI RCATGY 1 cut(s) 333
PaeI GCATGC 1 cut(s) 333
PagI TCATGA 1 cut(s) 1159
PaqCI CACCTGC 1 cut(s) 2566
PctI GAATGC 1 cut(s) 1949
PdmI GAANNNNTTC 3 cut(s) 348, 796, 2979
PfeI GAWTC 3 cut(s) 631, 1256, 2162
Pfl23II CGTACG 1 cut(s) 437
PflMI CCANNNNNTGG 1 cut(s) 115
PinAI ACCGGT 1 cut(s) 2108
PkrI GCNGC 6 cut(s) 808, 854, 1855, 1858, 2356, 2740
PleI GAGTC 1 cut(s) 1618
PpsI GAGTC 1 cut(s) 1618
Ppu21I YACGTR 1 cut(s) 441
PshAI GACNNNNGTC 1 cut(s) 1023
Psp6I CCWGG 6 cut(s) 1132, 1408, 1738, 2050, 2331, 2824
PspEI GGTNACC 1 cut(s) 2104
PspFI CCCAGC 1 cut(s) 2005
PspGI CCWGG 6 cut(s) 1132, 1408, 1738, 2050, 2331, 2824
PspLI CGTACG 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 249, 2058
PspPI GGNCC 7 cut(s) 29, 787, 2111, 2559, 2770, 2828, 2883
PstI CTGCAG 2 cut(s) 529, 2122
PstNI CAGNNNCTG 3 cut(s) 812, 1342, 2784
PsuI RGATCY 2 cut(s) 459, 1667
PvuII CAGCTG 2 cut(s) 1856, 2208
RsaI GTAC 7 cut(s) 143, 149, 439, 1737, 2549, 2701, 2940
RsaNI GTAC 7 cut(s) 142, 148, 438, 1736, 2548, 2700, 2939
RseI CAYNNNNRTG 3 cut(s) 171, 276, 2170
SalI GTCGAC 2 cut(s) 182, 1325
SaqAI TTAA 7 cut(s) 291, 830, 1124, 1223, 1967, 2277, 2888
SatI GCNGC 6 cut(s) 807, 853, 1854, 1857, 2355, 2739
Sau3AI GATC 8 cut(s) 130, 260, 459, 1667, 1698, 2438, 2580, 2917
Sau96I GGNCC 7 cut(s) 29, 787, 2111, 2559, 2770, 2828, 2883
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 1 cut(s) 1619
ScrFI CCNGG 7 cut(s) 1134, 1410, 1740, 2052, 2177, 2333, 2826
SduI GDGCHC 2 cut(s) 1114, 2380
SexAI ACCWGGT 1 cut(s) 1738
SfaNI GCATC 4 cut(s) 268, 788, 1834, 2366
SfcI CTRYAG 9 cut(s) 525, 939, 1059, 1779, 1993, 2118, 2155, 2874, 3069
SinI GGWCC 5 cut(s) 787, 2111, 2770, 2828, 2883
SmiMI CAYNNNNRTG 3 cut(s) 171, 276, 2170
SpeI ACTAGT 2 cut(s) 1726, 3040
SphI GCATGC 1 cut(s) 333
SsiI CCGC 3 cut(s) 852, 2085, 2512
SspI AATATT 1 cut(s) 1319
StyD4I CCNGG 7 cut(s) 1132, 1408, 1738, 2050, 2175, 2331, 2824
StyI CCWWGG 4 cut(s) 25, 783, 962, 1096
TaiI ACGT 2 cut(s) 443, 1639
TaqII GACCGA 1 cut(s) 2845
TatI WGTACW 4 cut(s) 141, 2547, 2699, 2938
TauI GCSGC 1 cut(s) 855
TfiI GAWTC 3 cut(s) 631, 1256, 2162
Tru1I TTAA 7 cut(s) 291, 830, 1124, 1223, 1967, 2277, 2888
Tru9I TTAA 7 cut(s) 291, 830, 1124, 1223, 1967, 2277, 2888
TseFI GTSAC 3 cut(s) 1577, 2104, 2963
TseI GCWGC 5 cut(s) 806, 1853, 1856, 2354, 2738
Tsp45I GTSAC 3 cut(s) 1577, 2104, 2963
TspGWI ACGGA 2 cut(s) 62, 758
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 5 cut(s) 787, 2111, 2770, 2828, 2883
XagI CCTNNNNNAGG 1 cut(s) 110
XapI RAATTY 7 cut(s) 469, 950, 1673, 2014, 2589, 2647, 2835
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 1816
XmaJI CCTAGG 1 cut(s) 1096
XmiI GTMKAC 4 cut(s) 21, 183, 1326, 2523
XmnI GAANNNNTTC 3 cut(s) 348, 796, 2979
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.