Rw2G050640

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000472
Physical Location & Seq
Forward (+)
78243935 .. 78251536
7602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050640.1

Sequence Viewer

Length: 4314 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAGGACCTCTTTCCACCAGCATGCATCAAGTTTCAGGATCACTTCAGATGTCAGATCCATGAAAGAGAATGATGACGATGAGGTTGAGTTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGCATTCAAACGTCACTCTCCAGCTATGACAAAGAGGAAGATGATCATGAAGGTAAGACTAAGAGGGTAGTTGATGTTACAAAGCTAGGAGCCCTGGAACGTCGTGTGTTCATTGATTATCTTCTCAAGGACATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGACAGAGTGGGATTGCAATTACCGACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCGCTCCCAACACTATGGAACACGCTCAAAAGCTTTCTCTCTGTGATGACACAGATATTTGGGTGCAAGTCTCAAGCATACAAACTAGAAATTCTAAAACAAGTCAGTGGCATCATCAAGCCTTCAAGGATGACTCTATTACTTGGTCCTCCAAGCTGTGGGAAAACCACCTTATTACAGGCACTTGCAGGAAAACTTAACCACTCTCTCAAGGTTCAAGGAGAAATAACTTACAATGGTTATAAGATGAACGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAAATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGCTGCCAGGGTATTGGAAGCAGAGCCGATATTATGAAAGAAGTTGCTAGAAGAGAGAACCAAGCTGGTATTGTCCCAGAACCAGACATTGACGCTTATATGAAGGCCATTTCAATTGAAGGGTTGAAAAAATCTTTAATGACAGACTATATAATAAAGATCCTTGGGCTGGATATTTGTGCTGATACAATCGTAGGGGATGCAATGCAAAGAGGAATCTCCGGCGGTCAAAAGAAAAGGCTGACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTCATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACTTTTCAAATTGTAACTTGTCTGCAGCAGTTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACACCAGAGACTTTTCATCTGTTTGATGATATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGACCTAGTGACAATGTTGTGGAGTTCTTTCAGGAGTGTGGTTTCCGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAGGAGGTGGTTTCTCAAAACGATCAAGCAAAGTACTGGTCCCATAAAGACCAACCCTATAGGTATGTCAGTGTTGATAAGTTCGTAAATATGTTTAAAGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAACTTTGCAAGCCTTTCGATCAATCTGAGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGATTCTCATGAAGCGAAACTCATTTGTTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAATAACAATGACAATCTTTTCACGTACATGGATGAAAATCGACGAGACCCATGCAAAGTACTACATGAGTTCTTTGTTTTATGCTCTACTTAGACTGCTCTGCATTGGAATTGCAGAGATATCAATGACTGCCTCTAGACTTGCAGTCTTCTATAAGCAAAGAGATTTCTACTTCTATCCTGCATGGGCTTATTCTCTTCCAGCTGCCATTCTAAAGATTCCATTCTCATTGCTAGATGCATTTCTTTGGACAGCCCTCACTTATTATGTTATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTATTCTTTTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGAACTGTCGGTCTATTCTCTTTAATAGTAATGTATCTATTTGGTGGCTTTATAATTCCAAAATCTTCTCTACCTGCTTGGTTGGCATGGGGATTTTGGGTTTCTCCATTGGCCTTTGCAGAACTAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTCACTATAGGCCAGCAAGCTCTAATTAACCATGGTCTAAACTTCAGTGACTACTTCTATTGGATATCAATAGGAGCTTTACTTGGATTTTGGATGTTTTTCAACCTTGGATTCACATGCATACTCAGTTATTCAAAGTCTCCAGGTAGTTCTCGGACTATCATCTCTCATGAAAGATTCTCCCGTCTGAAGAAAAAGGATACTTTAAACAATTCCCGTCAAGAACACGAATTAACTTGTGGAGATACTGACATAACTTCTTCAGAATCTACAAATGTAGGCATGGTGTTACCTTTTGAGCCCATAAGTATATCATTTGAGAAACTGCATTACTTTATTGATACACCCCAGAAACTGAGAGAGCAAGGTTTCCCACCAAATCGACTACAGCTTCTTCAAGATATAACTGGCTCATTTAGACCTGCGATTCTCACAGCTTTGATGGGAGTTAGTGGAGCTGGAAAAACGACACTGATGGATGTTCTTTCAGGAAGAAAAACTGGTGGAATTATTGAAGGGGACATTAGAATTGGAGGGTTCCCAAAAGTCCAAGAAACATATGCCAGAATATCGGGGTATTGCGAGCAAAGTGACATACATTCTCCAGAGCTTACAGTAGAAGAATCAGTCGCATACTCAGCCTGGTTACGCTTGCCATCCCAGATTGATAGAAATACTAGAGCTGAGTTTGTGCAAGAAGTACTTCAAATGATAGAGCTTGATGAAATCAAAGACGAGTTAGTTGGCATACCAGGTGGTAGTGGTATATCGACTGAACAGCGTAAAAGGTTAACAATAGCAGTAGAGCTTGTTTCAAATCCATCAATAATATTCATGGATGAACCCACGTCTGGTTTAGATGCAAGAGCAGCTGCAATAATTATGCGAGTTGTGAAAAATATCGTCAGTACAGGGAGGACTATTGTATGCACTATTCATCAGCCAAGTATTGACATATTTGAAGCATTCGACGAGCTTATTTTGATGAAAAGAGGAGGACAAATAATATACTGTGGAGAGCTGGGTCAAGATTCAAGTAAGCTTATCCAATACTTTGAGGGTATTTCTGGGGTTCCAAAAATCAAAGATAATTACAACCCAGCAACATGGATGTTAGAAGTCACAAGTCCTTCTGCAGAAGCCAAACTGGCCTTAGATTTTGCTCAGCTTTATAGAGAATCACATCTATGCCAGAAGAACAATGATCTAGTTAGAGAACTCAGCTTACCAGTACAAGGCTCAAAGGAATTGTATTTTCCTACTCACTTCCCACAAAATGGATGGGAGCAATTTAAAGCATGTCTCTGGAAGCGACATCTCTCCTATTGGAGAAATCCAAGATATAATCTGGGGCGATTGGCAATTACTGCTGCATCTTCTTTGATATTTGGAGCACTTCTTTGGCAGAAAGGACAGAGAATAAATGGTGAACAGGAGTTCTTCAGCATTCTAGGATCAATATTTATTTTACAACAATGCATGGGAATTGGTAACTGTTCCTCTGTTTTACCATTTGTCACTTCTGAGCGCAATGTTGTATACCGAGAAAGGTTTGCTGGAATGTACTCCTCATGGGCATATTCTTTTTCACAGGTGATCATTGAACTTCCGTATATATTACTTCAGGCAGTTATCTTTTCGACCATTACATATCCAACCATTGGTTTCCACTGGTCACTTTACAAAGTATTCTGGTATGTGTACGCTATGTTTTGTACACTGCTCTATTTCACTTACTTCGGTATATTGGTTGCTTCTGCGACCCCAACTTTCCAAGTGGCTTCAGTATTAGCAAGTTTCTGCTACACCATGTTCAATCTGTTCTCGGGATTCCTAATACCTCAACCAAACATTCCTAAATGGTGGGTTTGGGGCTACTGGATTTGCCCTTTATCGTGGTCCTTAAAAGGTATTCTCATTTCACAGTACGGAGATTTAAACAAGGAAATTGTACTCCGCGGGGAAGAAAAGACTATCAGTTCCTTCTTAGAAAGCATCTATGGATACAGCTATGATGATCTAGGAATTGTAGGAACTGTTCTTCTTGCATATCCACTAGTTTTCGCATTTGCGTTTGCACTTGCTACTGAAAAACTCAACTTTCAGAGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1437

Amino Acids

163.26

Weight (kDa)

6.96

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 355 4.8e-14 ABC transporter
ABC2_membrane_7 PF19055 389 - 463 3.3e-06 ABC-2 type transporter
ABC2_membrane PF01061 510 - 721 6.8e-42 ABC-2 type transporter
PDR_assoc PF08370 726 - 788 8.6e-19 Plant PDR ABC transporter associated
ABC_tran PF00005 865 - 1017 2.8e-18 ABC transporter
ABC2_membrane PF01061 1162 - 1376 2e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 669, 2069
AasI GACNNNNNNGTC 1 cut(s) 1424
Acc36I ACCTGC 2 cut(s) 2098, 2629
AccB7I CCANNNNNTGG 4 cut(s) 584, 1324, 3476, 3860
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 2 cut(s) 1230, 3738
AccII CGCG 1 cut(s) 4158
AciI CCGC 4 cut(s) 428, 996, 4156, 4158
AclWI GGATC 4 cut(s) 77, 81, 925, 3661
AcsI RAATTY 3 cut(s) 385, 516, 2159
AfiI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 3050, 3434, 3476, 3860
AhdI GACNNNNNGTC 1 cut(s) 1766
AhlI ACTAGT 1 cut(s) 4255
AjiI CACGTC 1 cut(s) 3048
AjnI CCWGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
Alw21I GWGCWC 1 cut(s) 3595
Alw26I GTCTC 5 cut(s) 501, 1172, 1661, 2343, 3506
AlwI GGATC 4 cut(s) 77, 81, 925, 3661
AlwNI CAGNNNCTG 2 cut(s) 2021, 2554
Ama87I CYCGRG 1 cut(s) 4024
AoxI GGCC 6 cut(s) 876, 1036, 1075, 2127, 2209, 3348
ApeKI GCWGC 8 cut(s) 11, 131, 774, 1117, 1826, 3068, 3071, 3569
ApoI RAATTY 3 cut(s) 385, 516, 2159
ArsI GACNNNNNNTTYG 2 cut(s) 1340, 1372
Asp700I GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2901
AspLEI GCGC 1 cut(s) 3729
AspS9I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 4098
AsuHPI GGTGA 3 cut(s) 1034, 3638, 3805
AvaI CYCGRG 1 cut(s) 4024
AvaII GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 4098
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanII GRGCYC 2 cut(s) 253, 2502
BauI CACGAG 1 cut(s) 1949
BbsI GAAGAC 2 cut(s) 701, 1762
Bbv12I GWGCWC 1 cut(s) 3595
BbvI GCAGC 7 cut(s) 118, 761, 1129, 1813, 3058, 3080, 3556
BccI CCATC 6 cut(s) 1204, 2635, 2668, 2863, 3028, 3474
BcgI CGANNNNNNTGC 4 cut(s) 1444, 1478, 1655, 1689
BciT130I CCWGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
BciVI GTATCC 2 cut(s) 2392, 4196
BclI TGATCA 2 cut(s) 202, 3795
BcoDI GTCTC 5 cut(s) 501, 1172, 1661, 2343, 3506
BcuI ACTAGT 1 cut(s) 4255
BfmI CTRYAG 6 cut(s) 12, 1115, 1375, 2205, 2585, 3333
BfuAI ACCTGC 2 cut(s) 2098, 2629
BfuI GTATCC 2 cut(s) 2392, 4196
BglI GCCNNNNNGGC 1 cut(s) 3347
BisI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 3069, 3072, 3570
BlpI GCTNAGC 1 cut(s) 3363
BlsI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1828, 3070, 3073, 3571
BmcAI AGTACT 3 cut(s) 1352, 1682, 2901
Bme1390I CCNGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
Bme18I GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 4098
BmeRI GACNNNNNGTC 1 cut(s) 1766
BmeT110I CYCGRG 1 cut(s) 4024
BmgBI CACGTC 1 cut(s) 3048
BmgT120I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 4098
BmiI GGNNCC 4 cut(s) 250, 1358, 2738, 3273
BmrFI CCNGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
BmsI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 3049, 3581, 4203
BpiI GAAGAC 2 cut(s) 701, 1762
BpmI CTGGAG 4 cut(s) 163, 1301, 2325, 2787
Bpu1102I GCTNAGC 1 cut(s) 3363
BpuEI CTTGAG 3 cut(s) 269, 483, 620
BsaAI YACGTR 1 cut(s) 1646
BsaBI GATNNNNATC 1 cut(s) 1658
BsaI GGTCTC 1 cut(s) 1661
BsaJI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1992, 2171, 2230, 2305, 4156
Bsc4I CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 3050, 3434, 3476, 3860
Bse1I ACTGG 8 cut(s) 762, 1358, 2611, 2704, 3351, 3428, 3875, 4082
Bse3DI GCAATG 4 cut(s) 981, 1614, 1850, 3736
Bse8I GATNNNNATC 1 cut(s) 1658
BseBI CCWGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
BseDI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1992, 2171, 2230, 2305, 4156
BseJI GATNNNNATC 1 cut(s) 1658
BseLI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 3050, 3434, 3476, 3860
BseMI GCAATG 4 cut(s) 981, 1614, 1850, 3736
BseNI ACTGG 8 cut(s) 762, 1358, 2611, 2704, 3351, 3428, 3875, 4082
BseRI GAGGAG 2 cut(s) 3207, 3757
BseXI GCAGC 7 cut(s) 118, 761, 1129, 1813, 3058, 3080, 3556
BseYI CCCAGC 3 cut(s) 1039, 3220, 3298
Bsh1236I CGCG 1 cut(s) 4158
BshFI GGCC 6 cut(s) 878, 1038, 1077, 2129, 2211, 3350
BsiHKAI GWGCWC 1 cut(s) 3595
BsiHKCI CYCGRG 1 cut(s) 4024
BsiSI CCGG 1 cut(s) 993
BslFI GGGAC 3 cut(s) 830, 1342, 2732
BslI CCNNNNNNNGG 9 cut(s) 584, 940, 1298, 1321, 1324, 3050, 3434, 3476, 3860
BsmAI GTCTC 5 cut(s) 501, 1172, 1661, 2343, 3506
BsmFI GGGAC 3 cut(s) 830, 1342, 2732
BsmI GAATGC 3 cut(s) 162, 3164, 3645
BsnI GGCC 6 cut(s) 878, 1038, 1077, 2129, 2211, 3350
Bso31I GGTCTC 1 cut(s) 1661
BsoBI CYCGRG 1 cut(s) 4024
Bsp1286I GDGCHC 3 cut(s) 253, 2502, 3595
Bsp1407I TGTACA 1 cut(s) 3914
Bsp1720I GCTNAGC 1 cut(s) 3363
Bsp19I CCATGG 2 cut(s) 1234, 2230
BspACI CCGC 4 cut(s) 428, 996, 4156, 4158
BspANI GGCC 6 cut(s) 878, 1038, 1077, 2129, 2211, 3350
BspFNI CGCG 1 cut(s) 4158
BspHI TCATGA 3 cut(s) 205, 1563, 2368
BspLI GGNNCC 4 cut(s) 250, 1358, 2738, 3273
BspMAI CTGCAG 3 cut(s) 16, 1119, 3337
BspMI ACCTGC 2 cut(s) 2098, 2629
BspPI GGATC 4 cut(s) 77, 81, 925, 3661
BspTNI GGTCTC 1 cut(s) 1661
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 4 cut(s) 981, 1614, 1850, 3736
BsrGI TGTACA 1 cut(s) 3914
BsrI ACTGG 8 cut(s) 762, 1358, 2611, 2704, 3351, 3428, 3875, 4082
BssECI CCNNGG 9 cut(s) 252, 778, 934, 1234, 1992, 2171, 2230, 2305, 4156
BssNAI GTATAC 2 cut(s) 1231, 3739
BssSI CACGAG 1 cut(s) 1949
BssT1I CCWWGG 6 cut(s) 934, 1234, 1992, 2171, 2230, 2305
Bst1107I GTATAC 2 cut(s) 1231, 3739
Bst2BI CACGAG 1 cut(s) 1949
Bst2UI CCWGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
Bst4CI ACNGT 9 cut(s) 367, 745, 1904, 2023, 2815, 3212, 3695, 4125, 4237
Bst6I CTCTTC 3 cut(s) 817, 1437, 1824
BstAPI GCANNNNNTGC 1 cut(s) 3566
BstAUI TGTACA 1 cut(s) 3914
BstBAI YACGTR 1 cut(s) 1646
BstC8I GCNNGC 7 cut(s) 54, 1457, 1540, 2213, 2217, 2783, 2852
BstDSI CCRYGG 3 cut(s) 1234, 2230, 4156
BstENI CCTNNNNNAGG 1 cut(s) 1319
BstFNI CGCG 1 cut(s) 4158
BstHHI GCGC 1 cut(s) 3729
BstMAI GTCTC 5 cut(s) 501, 1172, 1661, 2343, 3506
BstMWI GCNNNNNNNGC 6 cut(s) 1083, 2099, 2837, 3068, 3347, 3566
BstNI CCWGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
BstNSI RCATGY 5 cut(s) 56, 1490, 1542, 2319, 3501
BstSCI CCNGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
BstSFI CTRYAG 6 cut(s) 12, 1115, 1375, 2205, 2585, 3333
BstUI CGCG 1 cut(s) 4158
BstV1I GCAGC 7 cut(s) 118, 761, 1129, 1813, 3058, 3080, 3556
BstV2I GAAGAC 2 cut(s) 701, 1762
BstX2I RGATCY 2 cut(s) 86, 930
BstXI CCANNNNNNTGG 4 cut(s) 441, 785, 1150, 3306
BstYI RGATCY 2 cut(s) 86, 930
BstZ17I GTATAC 2 cut(s) 1231, 3739
BsuI GTATCC 2 cut(s) 2392, 4196
BsuRI GGCC 6 cut(s) 878, 1038, 1077, 2129, 2211, 3350
BtgI CCRYGG 3 cut(s) 1234, 2230, 4156
BtrI CACGTC 1 cut(s) 3048
BtsI GCAGTG 2 cut(s) 131, 3917
BtsIMutI CAGTG 9 cut(s) 131, 538, 755, 1393, 1511, 2251, 2669, 3868, 3917
BveI ACCTGC 2 cut(s) 2098, 2629
Cac8I GCNNGC 7 cut(s) 54, 1457, 1540, 2213, 2217, 2783, 2852
CaiI CAGNNNCTG 2 cut(s) 2021, 2554
CciI TCATGA 3 cut(s) 205, 1563, 2368
CfoI GCGC 1 cut(s) 3729
Cfr13I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 4098
Cfr42I CCGCGG 1 cut(s) 4159
CseI GACGC 1 cut(s) 872
CsiI ACCWGGT 1 cut(s) 2950
DraI TTTAAA 4 cut(s) 1414, 2406, 3493, 4137
DrdI GACNNNNNNGTC 1 cut(s) 1424
DriI GACNNNNNGTC 1 cut(s) 1766
DseDI GACNNNNNNGTC 1 cut(s) 1424
Eam1104I CTCTTC 3 cut(s) 817, 1437, 1824
Eam1105I GACNNNNNGTC 1 cut(s) 1766
EarI CTCTTC 3 cut(s) 817, 1437, 1824
Eco130I CCWWGG 6 cut(s) 934, 1234, 1992, 2171, 2230, 2305
Eco147I AGGCCT 1 cut(s) 1077
Eco24I GRGCYC 2 cut(s) 253, 2502
Eco31I GGTCTC 1 cut(s) 1661
Eco32I GATATC 3 cut(s) 1068, 1743, 2265
Eco47I GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 4098
Eco88I CYCGRG 1 cut(s) 4024
EcoNI CCTNNNNNAGG 1 cut(s) 1319
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
EcoRV GATATC 3 cut(s) 1068, 1743, 2265
EcoT14I CCWWGG 6 cut(s) 934, 1234, 1992, 2171, 2230, 2305
EcoT22I ATGCAT 4 cut(s) 58, 1864, 2321, 3680
EcoT38I GRGCYC 2 cut(s) 253, 2502
ErhI CCWWGG 6 cut(s) 934, 1234, 1992, 2171, 2230, 2305
FalI AAGNNNNNCTT 6 cut(s) 1434, 1466, 1527, 1559, 2886, 2918
FaqI GGGAC 3 cut(s) 830, 1342, 2732
FauI CCCGC 1 cut(s) 4151
FauNDI CATATG 1 cut(s) 2758
FbaI TGATCA 2 cut(s) 202, 3795
FblI GTMKAC 2 cut(s) 1230, 3738
Fnu4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 3069, 3072, 3570
FriOI GRGCYC 2 cut(s) 253, 2502
Fsp4HI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 3069, 3072, 3570
GlaI GCGC 1 cut(s) 3728
GluI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 3069, 3072, 3570
GsaI CCCAGC 3 cut(s) 1043, 3224, 3302
GsuI CTGGAG 4 cut(s) 163, 1301, 2325, 2787
HaeIII GGCC 6 cut(s) 878, 1038, 1077, 2129, 2211, 3350
HapII CCGG 1 cut(s) 993
HgaI GACGC 1 cut(s) 872
HhaI GCGC 1 cut(s) 3729
Hin6I GCGC 1 cut(s) 3727
HinP1I GCGC 1 cut(s) 3727
HincII GTYRAC 2 cut(s) 1125, 2991
HindII GTYRAC 2 cut(s) 1125, 2991
HindIII AAGCTT 3 cut(s) 457, 1436, 3239
HpaI GTTAAC 1 cut(s) 2991
HpaII CCGG 1 cut(s) 993
HphI GGTGA 3 cut(s) 1034, 3638, 3805
Hpy166II GTNNAC 7 cut(s) 1125, 1231, 2991, 3629, 3739, 3901, 3917
Hpy8I GTNNAC 7 cut(s) 1125, 1231, 2991, 3629, 3739, 3901, 3917
Hpy99I CGWCG 3 cut(s) 264, 1667, 3173
HpyCH4III ACNGT 9 cut(s) 367, 745, 1904, 2023, 2815, 3212, 3695, 4125, 4237
HpyCH4IV ACGT 4 cut(s) 170, 259, 1645, 3047
HpyF10VI GCNNNNNNNGC 6 cut(s) 1083, 2099, 2837, 3068, 3347, 3566
HpySE526I ACGT 4 cut(s) 170, 259, 1645, 3047
HspAI GCGC 1 cut(s) 3727
Ksp22I TGATCA 2 cut(s) 202, 3795
KspAI GTTAAC 1 cut(s) 2991
KspI CCGCGG 1 cut(s) 4159
LmnI GCTCC 8 cut(s) 248, 435, 1091, 2173, 2273, 2654, 3484, 3590
Lsp1109I GCAGC 7 cut(s) 118, 761, 1129, 1813, 3058, 3080, 3556
LweI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 3049, 3581, 4203
MabI ACCWGGT 1 cut(s) 2950
MaeII ACGT 4 cut(s) 170, 259, 1645, 3047
MbiI CCGCTC 1 cut(s) 430
MfeI CAATTG 1 cut(s) 885
MflI RGATCY 2 cut(s) 86, 930
MhlI GDGCHC 3 cut(s) 253, 2502, 3595
MlyI GAGTC 2 cut(s) 553, 1120
MmeI TCCRAC 2 cut(s) 1408, 3878
Mph1103I ATGCAT 4 cut(s) 58, 1864, 2321, 3680
MroXI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2901
MslI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3385
MspA1I CMGCKG 3 cut(s) 1826, 3071, 4158
MspI CCGG 1 cut(s) 993
MspR9I CCNGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
MunI CAATTG 1 cut(s) 885
Mva1269I GAATGC 3 cut(s) 162, 3164, 3645
MvaI CCWGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
MvnI CGCG 1 cut(s) 4158
MwoI GCNNNNNNNGC 6 cut(s) 1083, 2099, 2837, 3068, 3347, 3566
NcoI CCATGG 2 cut(s) 1234, 2230
NdeI CATATG 1 cut(s) 2758
NlaIV GGNNCC 4 cut(s) 250, 1358, 2738, 3273
NmuCI GTSAC 8 cut(s) 171, 1244, 2200, 2246, 2789, 3319, 3715, 3873
NsiI ATGCAT 4 cut(s) 58, 1864, 2321, 3680
NspI RCATGY 5 cut(s) 56, 1490, 1542, 2319, 3501
PaeI GCATGC 2 cut(s) 56, 1542
PagI TCATGA 3 cut(s) 205, 1563, 2368
PceI AGGCCT 1 cut(s) 1077
PctI GAATGC 3 cut(s) 162, 3164, 3645
PdmI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2901
PflMI CCANNNNNTGG 4 cut(s) 584, 1324, 3476, 3860
PfoI TCCNGGA 1 cut(s) 1317
PkrI GCNGC 9 cut(s) 13, 133, 429, 776, 1119, 1828, 3070, 3073, 3571
PleI GAGTC 2 cut(s) 553, 1120
PpsI GAGTC 2 cut(s) 553, 1120
Ppu21I YACGTR 1 cut(s) 1646
PpuMI RGGWCCY 1 cut(s) 36
PsiI TTATAA 2 cut(s) 669, 2069
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
PspFI CCCAGC 3 cut(s) 1039, 3220, 3298
PspGI CCWGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
PspN4I GGNNCC 4 cut(s) 250, 1358, 2738, 3273
PspPI GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 4098
PspPPI RGGWCCY 1 cut(s) 36
PsrI GAACNNNNNNTAC 4 cut(s) 3408, 3440, 4221, 4253
PstI CTGCAG 3 cut(s) 16, 1119, 3337
PstNI CAGNNNCTG 2 cut(s) 2021, 2554
PsuI RGATCY 2 cut(s) 86, 930
PvuII CAGCTG 2 cut(s) 1826, 3071
RseI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3385
SacII CCGCGG 1 cut(s) 4159
SatI GCNGC 9 cut(s) 12, 132, 428, 775, 1118, 1827, 3069, 3072, 3570
Sau96I GGNCC 7 cut(s) 36, 572, 1037, 1238, 1356, 1996, 4098
ScaI AGTACT 3 cut(s) 1352, 1682, 2901
SchI GAGTC 2 cut(s) 553, 1120
ScrFI CCNGG 6 cut(s) 254, 779, 1319, 2343, 2842, 2952
SduI GDGCHC 3 cut(s) 253, 2502, 3595
SexAI ACCWGGT 1 cut(s) 2950
SfaNI GCATC 9 cut(s) 65, 546, 961, 1849, 1963, 1997, 3049, 3581, 4203
SfcI CTRYAG 6 cut(s) 12, 1115, 1375, 2205, 2585, 3333
Sfr303I CCGCGG 1 cut(s) 4159
SgrBI CCGCGG 1 cut(s) 4159
SinI GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 4098
SmiMI CAYNNNNRTG 4 cut(s) 51, 1485, 1648, 3385
SmlI CTYRAG 3 cut(s) 284, 498, 635
SmoI CTYRAG 3 cut(s) 284, 498, 635
SpeI ACTAGT 1 cut(s) 4255
SphI GCATGC 2 cut(s) 56, 1542
SseBI AGGCCT 1 cut(s) 1077
SsiI CCGC 4 cut(s) 428, 996, 4156, 4158
SspI AATATT 2 cut(s) 3030, 3660
StuI AGGCCT 1 cut(s) 1077
StyD4I CCNGG 6 cut(s) 252, 777, 1317, 2341, 2840, 2950
StyI CCWWGG 6 cut(s) 934, 1234, 1992, 2171, 2230, 2305
TaaI ACNGT 9 cut(s) 367, 745, 1904, 2023, 2815, 3212, 3695, 4125, 4237
TaiI ACGT 4 cut(s) 173, 262, 1648, 3050
TaqI TCGA 6 cut(s) 1464, 1662, 2581, 2969, 3168, 3839
TaqII GACCGA 1 cut(s) 2015
TatI WGTACW 8 cut(s) 1350, 1680, 2899, 3107, 3430, 3762, 3914, 4150
TauI GCSGC 1 cut(s) 430
TscAI CASTG 9 cut(s) 131, 538, 762, 1393, 1518, 2251, 2676, 3875, 3924
TseFI GTSAC 8 cut(s) 171, 1244, 2200, 2246, 2789, 3319, 3715, 3873
TseI GCWGC 8 cut(s) 11, 131, 774, 1117, 1826, 3068, 3071, 3569
Tsp45I GTSAC 8 cut(s) 171, 1244, 2200, 2246, 2789, 3319, 3715, 3873
TspGWI ACGGA 3 cut(s) 1271, 3798, 4143
TspRI CASTG 9 cut(s) 131, 538, 762, 1393, 1518, 2251, 2676, 3875, 3924
Van91I CCANNNNNTGG 4 cut(s) 584, 1324, 3476, 3860
VpaK11BI GGWCC 6 cut(s) 36, 572, 1238, 1356, 1996, 4098
XagI CCTNNNNNAGG 1 cut(s) 1319
XapI RAATTY 3 cut(s) 385, 516, 2159
XbaI TCTAGA 2 cut(s) 1547, 1757
XceI RCATGY 5 cut(s) 56, 1490, 1542, 2319, 3501
XcmI CCANNNNNNNNNTGG 1 cut(s) 3477
XmiI GTMKAC 2 cut(s) 1230, 3738
XmnI GAANNNNTTC 5 cut(s) 162, 414, 1557, 2005, 2901
ZrmI AGTACT 3 cut(s) 1352, 1682, 2901
Zsp2I ATGCAT 4 cut(s) 58, 1864, 2321, 3680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.