RchiOBHm_Chr2g0169371

pleiotropic drug resistance protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000472
Physical Location & Seq
Forward (+)
83600346 .. 83604215
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53696

Sequence Viewer

Length: 2346 bp
ATGGATTTGGCTGCAGAGATAGGAAGAAGTGTGAAGACTTCTTTTCATCAGCATGCATCAAGTTTCAGGAGCACTTCAGATGTCAGGTCCATGAAAGAGAATGATGACGATGAAGTTGAGCTGCAGTGGGCTGCCATTGAAAGATTGCCCACATTTGAACGTATTCGAACTTCACTCATGGATTGTAACAAGGAGGACGATGATCATGAAGGTAAGAGTAAGAGGGTAGTTGATGTTACAAAGCTAGAAGCCCTGGAACGTCATGTGTTCATTGATAATCTTCTCAAGGAAATAGAAGGAGATAATCAACGCCTCTTACAGAAACTCAAAGAAAGAATAGAAAGAGTGGGACTGCAATTGCCAACTGTGGAAGTACGATACCAAAATTTGTTTGTAGAAGCAGAATGTGAAGTAGTTCAAGGAAAGCCCCTTCCAACACTATGGAACACGCTCAAAAGCTCTCTCTCTGTCATGACACAGATAATTGGATGCAAGTCTGAAGCATACAATCTAAAAATTCTCAAAGATGTCAGCGGTATCATCAAGCCTTCAAGGATGACTCTTTTACTTGGTCCTCCAGGCTGTGGAAAAACAACCTTATTACAGGCACTTGCAAGAAAACATAACCAATCTCTCAAGGTTCAAGGAGAAATAAACTACAATGGTTATAAGCTCAATGAGTTTGTTCCTCAGAAGACATCAGCTTACATAAGTCAATATGACTTGCATATTTCTGAGATGACTGTGAGGGAAGCACTGGATTTCTCATCTCGTTGCCAGGGCATTGGAAGCAGAGCTGATATTATGAAAGAAGTTGCTCGAAGGGAGAAGCAAGCTGGTATAGTCCCGGAACCAGACATTGACACTTATATGAAGATCCTTGGGCTGGACATTTGTGCTGATACAATCGCAGGGGACGCAATGCAAAGAGGAATTTCTGGTGGTCAAAAGAAAAGGCTTACAACAGGTGAGATGATGATTGGCCCAGCAAGAGCTTTCTTTATGGATGAGATATCAACAGGCCTAGACAGCTCCACTACATATCAAATTGTAACTTGTCTGCAGCAATTGACTCATGTAACAGAATCCACCATTTTGGTTTCACTTCTTCAGCCAACTCCGGAGACTTTTCATCTGTTTGATGACATTATCTTGATGGCTGAAGGAAAAGTTGTATACCATGGGCCAAGGGACAATGTTGTGGAGTTCTTTCAGAAATGCGGTTTTTGTAGCCCACCACGAAAAGGCATTTCTGACTTCCTCCAAGAGGCAAGAGTTCTTGTGGTTTCTCAAAAGGATCAAGCAAAGTACTGGTACCATAAAGACCAACCCTACAGTTATGTTAGTATTGATAAGTTCGTAAATATGTTTAAGGACTTCCATGTCGGAAAGAAGCTTGAAGAGGAGCTTTGCAAGCCTTTTGATCAATCTGTGTGCCATAAACATGCTTTGTCATTCAACATTTACTCACTGAGAAAATGGGAACTATTCAAAGCATGCCTTTCTAGAGAATGGCTTCTCATGAAGAGAAACTCATTTATTCATGTATTCAAATCAGCACAGCTTGTGGTCATTGCACTAGTAACAATGACAATGTTTCTACGTACATGGATGAAAGTCGACGAAATCCATGCAAAGTACTACATGGGTTCTTTGTTTTATGCTCTACTTAGACTGCTATGCAATGGAACTGCAGAGATATCAATGACTGCCTCTAGACTAGCAGTCTTCTATAAGCAAAGAGATATCTACTTCTACCCAGCATGGGCTTATTCTATTCCGGCTGCCATCCTGAAAATTCCATTTTCATTGCTAGATGCATTTCTTTGGACAGCCCTTACTTATTATGTGATTGGTTACAGTCCTGAACCTGAAAGGTTCTTCAGGCAATTTGTTCTTCTGTTCCTCGTGCATCAAGTAGCAATATCACTATTTCGTTTGATTGCATCCTTGGTCCGAAATCCTTCTGTTGCAGGATCTGTCAGTCTTTTATCTTTAATAGTAATGTTTCTATTTGGAGGCTTCATAATTCCCAAATCTTCTCTACCTCCTTGGTTGGAATGGGGATTTTGGGTTTCTCCGTTGGCATTTGCAGAAATAGGTGCTTCAATAAATGAATTTCATGCTCCAAGGTGGCAAAAGGTTTTATCTTCCAATGTTACTATAGGCCAGCAAGCTTTAATTAACCGGGGTCTAAACTTCAGTGAATACTTCTATTGGATATCAATAGGAGCTTTATTTGGATTTTGGATGGTTTTCAACCTTGGGTTCACATGCGTACTCAGTTATTCAAAGGGTGACTCCCTCCACCTATGCACATACAAGAAAGAATATGCAAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

781

Amino Acids

89.21

Weight (kDa)

8.41

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 174 - 337 1.1e-16 ABC transporter
ABC2_membrane PF01061 496 - 707 3.1e-43 ABC-2 type transporter
PDR_assoc PF08370 712 - 764 3.4e-16 Plant PDR ABC transporter associated
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 669
AasI GACNNNNNNGTC 1 cut(s) 1382
Acc65I GGTACC 1 cut(s) 1314
AccB1I GGYRCC 1 cut(s) 1314
AccB7I CCANNNNNTGG 1 cut(s) 584
AccI GTMKAC 2 cut(s) 1176, 1620
AccIII TCCGGA 1 cut(s) 1120
AciI CCGC 2 cut(s) 534, 1221
AclWI GGATC 3 cut(s) 871, 1305, 1984
AcsI RAATTY 5 cut(s) 385, 516, 933, 1797, 2117
AcuI CTGAAG 6 cut(s) 60, 519, 1094, 1182, 1867, 2185
AfaI GTAC 6 cut(s) 375, 1310, 1316, 1606, 1640, 2280
AfiI CCNNNNNNNGG 5 cut(s) 584, 886, 1244, 1267, 1765
AhdI GACNNNNNGTC 1 cut(s) 1724
AhlI ACTAGT 1 cut(s) 1579
AjnI CCWGG 3 cut(s) 252, 577, 777
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 1118
AlwI GGATC 3 cut(s) 871, 1305, 1984
AlwNI CAGNNNCTG 1 cut(s) 1979
Aor13HI TCCGGA 1 cut(s) 1120
AoxI GGCC 4 cut(s) 982, 1021, 1184, 2167
ApeKI GCWGC 5 cut(s) 11, 121, 131, 1063, 1784
ApoI RAATTY 5 cut(s) 385, 516, 933, 1797, 2117
Asp700I GAANNNNTTC 4 cut(s) 162, 414, 1515, 1963
Asp718I GGTACC 1 cut(s) 1314
AspS9I GGNCC 5 cut(s) 87, 572, 983, 1184, 1954
AsuC2I CCSGG 2 cut(s) 848, 2189
AsuHPI GGTGA 2 cut(s) 980, 2309
AsuII TTCGAA 1 cut(s) 166
AvaII GGWCC 3 cut(s) 87, 572, 1954
BanI GGYRCC 1 cut(s) 1314
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BauI CACGAG 1 cut(s) 1907
BbsI GAAGAC 3 cut(s) 41, 701, 1720
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 4 cut(s) 108, 118, 1075, 1771
BccI CCATC 3 cut(s) 1150, 1796, 2245
BcgI CGANNNNNNTGC 2 cut(s) 1613, 1647
BciT130I CCWGG 3 cut(s) 254, 579, 779
BclI TGATCA 2 cut(s) 202, 1423
BcnI CCSGG 2 cut(s) 848, 2189
BcoDI GTCTC 1 cut(s) 1118
BcuI ACTAGT 1 cut(s) 1579
BfaI CTAG 7 cut(s) 245, 1025, 1506, 1580, 1716, 1721, 1814
BfmI CTRYAG 6 cut(s) 12, 122, 1061, 1333, 1692, 2163
BisI GCNGC 5 cut(s) 12, 122, 132, 1064, 1785
BlsI GCNGC 5 cut(s) 13, 123, 133, 1065, 1786
BmcAI AGTACT 2 cut(s) 1310, 1640
Bme1390I CCNGG 5 cut(s) 254, 579, 779, 848, 2189
Bme18I GGWCC 3 cut(s) 87, 572, 1954
BmeRI GACNNNNNGTC 1 cut(s) 1724
BmgT120I GGNCC 5 cut(s) 87, 572, 983, 1184, 1954
BmiI GGNNCC 2 cut(s) 852, 1316
BmrFI CCNGG 5 cut(s) 254, 579, 779, 848, 2189
BmsI GCATC 5 cut(s) 65, 479, 1807, 1921, 1955
BpiI GAAGAC 3 cut(s) 41, 701, 1720
BpmI CTGGAG 1 cut(s) 561
Bpu14I TTCGAA 1 cut(s) 166
BpuEI CTTGAG 2 cut(s) 269, 620
BpuMI CCSGG 2 cut(s) 848, 2189
BsaAI YACGTR 1 cut(s) 1604
BsaWI WCCGGW 1 cut(s) 1120
Bsc4I CCNNNNNNNGG 5 cut(s) 584, 886, 1244, 1267, 1765
Bse1I ACTGG 2 cut(s) 762, 1316
Bse3DI GCAATG 4 cut(s) 927, 1572, 1690, 1808
BseAI TCCGGA 1 cut(s) 1120
BseBI CCWGG 3 cut(s) 254, 579, 779
BseGI GGATG 7 cut(s) 494, 561, 1012, 1617, 1788, 1946, 2256
BseLI CCNNNNNNNGG 5 cut(s) 584, 886, 1244, 1267, 1765
BseMI GCAATG 4 cut(s) 927, 1572, 1690, 1808
BseMII CTCAG 4 cut(s) 704, 726, 1463, 2296
BseNI ACTGG 2 cut(s) 762, 1316
BseRI GAGGAG 1 cut(s) 1418
BseXI GCAGC 4 cut(s) 108, 118, 1075, 1771
BseYI CCCAGC 2 cut(s) 985, 1759
BshFI GGCC 4 cut(s) 984, 1023, 1186, 2169
BshNI GGYRCC 1 cut(s) 1314
BsiHKAI GWGCWC 1 cut(s) 74
BsiSI CCGG 4 cut(s) 848, 1121, 1781, 2188
BslFI GGGAC 4 cut(s) 363, 830, 929, 1205
BslI CCNNNNNNNGG 5 cut(s) 584, 886, 1244, 1267, 1765
BsmAI GTCTC 1 cut(s) 1118
BsmFI GGGAC 4 cut(s) 363, 830, 929, 1205
BsnI GGCC 4 cut(s) 984, 1023, 1186, 2169
Bsp119I TTCGAA 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 1120
Bsp143I GATC 5 cut(s) 202, 876, 1297, 1423, 1976
Bsp19I CCATGG 1 cut(s) 1180
BspACI CCGC 2 cut(s) 534, 1221
BspANI GGCC 4 cut(s) 984, 1023, 1186, 2169
BspCNI CTCAG 4 cut(s) 703, 727, 1464, 2295
BspEI TCCGGA 1 cut(s) 1120
BspHI TCATGA 3 cut(s) 205, 471, 1521
BspLI GGNNCC 2 cut(s) 852, 1316
BspMAI CTGCAG 4 cut(s) 16, 126, 1065, 1696
BspPI GGATC 3 cut(s) 871, 1305, 1984
BspT104I TTCGAA 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 1314
BsrDI GCAATG 4 cut(s) 927, 1572, 1690, 1808
BsrI ACTGG 2 cut(s) 762, 1316
BssMI GATC 5 cut(s) 202, 876, 1297, 1423, 1976
BssNAI GTATAC 1 cut(s) 1177
BssSI CACGAG 1 cut(s) 1907
BssT1I CCWWGG 7 cut(s) 880, 1180, 1187, 1950, 2051, 2129, 2263
Bst1107I GTATAC 1 cut(s) 1177
Bst2BI CACGAG 1 cut(s) 1907
Bst2UI CCWGG 3 cut(s) 254, 579, 779
Bst4CI ACNGT 4 cut(s) 367, 745, 1337, 1862
Bst6I CTCTTC 2 cut(s) 1395, 1520
BstBAI YACGTR 1 cut(s) 1604
BstBI TTCGAA 1 cut(s) 166
BstC8I GCNNGC 6 cut(s) 54, 834, 1415, 1498, 2171, 2175
BstDEI CTNAG 5 cut(s) 690, 735, 1472, 1670, 2282
BstDSI CCRYGG 1 cut(s) 1180
BstENI CCTNNNNNAGG 1 cut(s) 1265
BstF5I GGATG 7 cut(s) 494, 561, 1012, 1617, 1788, 1946, 2256
BstKTI GATC 5 cut(s) 205, 879, 1300, 1426, 1979
BstMAI GTCTC 1 cut(s) 1118
BstMBI GATC 5 cut(s) 202, 876, 1297, 1423, 1976
BstMWI GCNNNNNNNGC 4 cut(s) 789, 917, 1029, 1414
BstNI CCWGG 3 cut(s) 254, 579, 779
BstNSI RCATGY 4 cut(s) 56, 1448, 1500, 2277
BstSCI CCNGG 5 cut(s) 252, 577, 777, 846, 2187
BstSFI CTRYAG 6 cut(s) 12, 122, 1061, 1333, 1692, 2163
BstSNI TACGTA 1 cut(s) 1604
BstV1I GCAGC 4 cut(s) 108, 118, 1075, 1771
BstV2I GAAGAC 3 cut(s) 41, 701, 1720
BstX2I RGATCY 2 cut(s) 876, 1976
BstXI CCANNNNNNTGG 3 cut(s) 441, 785, 1096
BstYI RGATCY 2 cut(s) 876, 1976
BstZ17I GTATAC 1 cut(s) 1177
BsuRI GGCC 4 cut(s) 984, 1023, 1186, 2169
BtgI CCRYGG 1 cut(s) 1180
BtsCI GGATG 7 cut(s) 494, 561, 1012, 1617, 1788, 1946, 2256
BtsI GCAGTG 1 cut(s) 131
BtsIMutI CAGTG 4 cut(s) 131, 755, 1469, 2209
Cac8I GCNNGC 6 cut(s) 54, 834, 1415, 1498, 2171, 2175
CaiI CAGNNNCTG 1 cut(s) 1979
CciI TCATGA 3 cut(s) 205, 471, 1521
Cfr13I GGNCC 5 cut(s) 87, 572, 983, 1184, 1954
CseI GACGC 1 cut(s) 926
Csp6I GTAC 6 cut(s) 374, 1309, 1315, 1605, 1639, 2279
CviQI GTAC 6 cut(s) 374, 1309, 1315, 1605, 1639, 2279
DdeI CTNAG 5 cut(s) 690, 735, 1472, 1670, 2282
DpnI GATC 5 cut(s) 204, 878, 1299, 1425, 1978
DpnII GATC 5 cut(s) 202, 876, 1297, 1423, 1976
DrdI GACNNNNNNGTC 1 cut(s) 1382
DriI GACNNNNNGTC 1 cut(s) 1724
DseDI GACNNNNNNGTC 1 cut(s) 1382
Eam1104I CTCTTC 2 cut(s) 1395, 1520
Eam1105I GACNNNNNGTC 1 cut(s) 1724
EarI CTCTTC 2 cut(s) 1395, 1520
Eco105I TACGTA 1 cut(s) 1604
Eco130I CCWWGG 7 cut(s) 880, 1180, 1187, 1950, 2051, 2129, 2263
Eco147I AGGCCT 1 cut(s) 1023
Eco32I GATATC 4 cut(s) 1014, 1701, 1747, 2223
Eco47I GGWCC 3 cut(s) 87, 572, 1954
Eco57I CTGAAG 6 cut(s) 60, 519, 1094, 1182, 1867, 2185
EcoNI CCTNNNNNAGG 1 cut(s) 1265
EcoRII CCWGG 3 cut(s) 252, 577, 777
EcoRV GATATC 4 cut(s) 1014, 1701, 1747, 2223
EcoT14I CCWWGG 7 cut(s) 880, 1180, 1187, 1950, 2051, 2129, 2263
EcoT22I ATGCAT 2 cut(s) 58, 1822
ErhI CCWWGG 7 cut(s) 880, 1180, 1187, 1950, 2051, 2129, 2263
FalI AAGNNNNNCTT 4 cut(s) 1392, 1424, 1485, 1517
FaqI GGGAC 4 cut(s) 363, 830, 929, 1205
FbaI TGATCA 2 cut(s) 202, 1423
FblI GTMKAC 2 cut(s) 1176, 1620
Fnu4HI GCNGC 5 cut(s) 12, 122, 132, 1064, 1785
FokI GGATG 7 cut(s) 501, 568, 1019, 1624, 1775, 1933, 2263
Fsp4HI GCNGC 5 cut(s) 12, 122, 132, 1064, 1785
FspBI CTAG 7 cut(s) 245, 1025, 1506, 1580, 1716, 1721, 1814
GluI GCNGC 5 cut(s) 12, 122, 132, 1064, 1785
GsaI CCCAGC 2 cut(s) 989, 1763
GsuI CTGGAG 1 cut(s) 561
HaeIII GGCC 4 cut(s) 984, 1023, 1186, 2169
HapII CCGG 4 cut(s) 848, 1121, 1781, 2188
HgaI GACGC 1 cut(s) 926
HincII GTYRAC 1 cut(s) 1621
HindII GTYRAC 1 cut(s) 1621
HindIII AAGCTT 2 cut(s) 1394, 2175
HinfI GANTC 4 cut(s) 559, 1072, 1085, 2300
HpaII CCGG 4 cut(s) 848, 1121, 1781, 2188
HphI GGTGA 2 cut(s) 980, 2309
Hpy166II GTNNAC 3 cut(s) 1177, 1621, 2271
Hpy188I TCNGA 8 cut(s) 79, 499, 693, 736, 1215, 1255, 1388, 1958
Hpy8I GTNNAC 3 cut(s) 1177, 1621, 2271
Hpy99I CGWCG 1 cut(s) 1625
HpyAV CCTTC 7 cut(s) 203, 290, 440, 558, 816, 1157, 1974
HpyCH4III ACNGT 4 cut(s) 367, 745, 1337, 1862
HpyCH4IV ACGT 3 cut(s) 160, 259, 1603
HpyF10VI GCNNNNNNNGC 4 cut(s) 789, 917, 1029, 1414
HpyF3I CTNAG 5 cut(s) 690, 735, 1472, 1670, 2282
HpySE526I ACGT 3 cut(s) 160, 259, 1603
Kpn2I TCCGGA 1 cut(s) 1120
KpnI GGTACC 1 cut(s) 1318
Ksp22I TGATCA 2 cut(s) 202, 1423
Kzo9I GATC 5 cut(s) 202, 876, 1297, 1423, 1976
LmnI GCTCC 5 cut(s) 69, 1037, 1405, 2131, 2231
Lsp1109I GCAGC 4 cut(s) 108, 118, 1075, 1771
LweI GCATC 5 cut(s) 65, 479, 1807, 1921, 1955
MaeI CTAG 7 cut(s) 245, 1025, 1506, 1580, 1716, 1721, 1814
MaeII ACGT 3 cut(s) 160, 259, 1603
MaeIII GTNAC 8 cut(s) 185, 235, 1051, 1078, 1582, 1856, 2158, 2297
MalI GATC 5 cut(s) 204, 878, 1299, 1425, 1978
MboI GATC 5 cut(s) 202, 876, 1297, 1423, 1976
MfeI CAATTG 2 cut(s) 356, 1067
MflI RGATCY 2 cut(s) 876, 1976
MhlI GDGCHC 1 cut(s) 74
MlyI GAGTC 3 cut(s) 553, 1066, 2294
MmeI TCCRAC 3 cut(s) 458, 1366, 2037
Mph1103I ATGCAT 2 cut(s) 58, 1822
MroI TCCGGA 1 cut(s) 1120
MroXI GAANNNNTTC 4 cut(s) 162, 414, 1515, 1963
MseI TTAA 4 cut(s) 1371, 1997, 2180, 2184
MslI CAYNNNNRTG 3 cut(s) 51, 869, 1443
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 4 cut(s) 848, 1121, 1781, 2188
MspR9I CCNGG 5 cut(s) 254, 579, 779, 848, 2189
MunI CAATTG 2 cut(s) 356, 1067
MvaI CCWGG 3 cut(s) 254, 579, 779
MwoI GCNNNNNNNGC 4 cut(s) 789, 917, 1029, 1414
NciI CCSGG 2 cut(s) 848, 2189
NcoI CCATGG 1 cut(s) 1180
NdeII GATC 5 cut(s) 202, 876, 1297, 1423, 1976
NlaIV GGNNCC 2 cut(s) 852, 1316
NmuCI GTSAC 1 cut(s) 2297
NsiI ATGCAT 2 cut(s) 58, 1822
NspI RCATGY 4 cut(s) 56, 1448, 1500, 2277
NspV TTCGAA 1 cut(s) 166
PacI TTAATTAA 1 cut(s) 2184
PaeI GCATGC 2 cut(s) 56, 1500
PagI TCATGA 3 cut(s) 205, 471, 1521
PceI AGGCCT 1 cut(s) 1023
PdmI GAANNNNTTC 4 cut(s) 162, 414, 1515, 1963
PfeI GAWTC 1 cut(s) 1085
PflMI CCANNNNNTGG 1 cut(s) 584
PfoI TCCNGGA 1 cut(s) 846
PkrI GCNGC 5 cut(s) 13, 123, 133, 1065, 1786
PleI GAGTC 3 cut(s) 553, 1066, 2294
PpsI GAGTC 3 cut(s) 553, 1066, 2294
Ppu21I YACGTR 1 cut(s) 1604
PsiI TTATAA 1 cut(s) 669
Psp6I CCWGG 3 cut(s) 252, 577, 777
PspFI CCCAGC 2 cut(s) 985, 1759
PspGI CCWGG 3 cut(s) 252, 577, 777
PspN4I GGNNCC 2 cut(s) 852, 1316
PspPI GGNCC 5 cut(s) 87, 572, 983, 1184, 1954
PstI CTGCAG 4 cut(s) 16, 126, 1065, 1696
PstNI CAGNNNCTG 1 cut(s) 1979
PsuI RGATCY 2 cut(s) 876, 1976
RsaI GTAC 6 cut(s) 375, 1310, 1316, 1606, 1640, 2280
RsaNI GTAC 6 cut(s) 374, 1309, 1315, 1605, 1639, 2279
RseI CAYNNNNRTG 3 cut(s) 51, 869, 1443
SalI GTCGAC 1 cut(s) 1619
SaqAI TTAA 4 cut(s) 1371, 1997, 2180, 2184
SatI GCNGC 5 cut(s) 12, 122, 132, 1064, 1785
Sau3AI GATC 5 cut(s) 202, 876, 1297, 1423, 1976
Sau96I GGNCC 5 cut(s) 87, 572, 983, 1184, 1954
ScaI AGTACT 2 cut(s) 1310, 1640
SchI GAGTC 3 cut(s) 553, 1066, 2294
ScrFI CCNGG 5 cut(s) 254, 579, 779, 848, 2189
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 5 cut(s) 65, 479, 1807, 1921, 1955
SfcI CTRYAG 6 cut(s) 12, 122, 1061, 1333, 1692, 2163
SfuI TTCGAA 1 cut(s) 166
SinI GGWCC 3 cut(s) 87, 572, 1954
SmiMI CAYNNNNRTG 3 cut(s) 51, 869, 1443
SmlI CTYRAG 2 cut(s) 284, 635
SmoI CTYRAG 2 cut(s) 284, 635
SnaBI TACGTA 1 cut(s) 1604
SpeI ACTAGT 1 cut(s) 1579
SphI GCATGC 2 cut(s) 56, 1500
SseBI AGGCCT 1 cut(s) 1023
SsiI CCGC 2 cut(s) 534, 1221
SspMI CTAG 7 cut(s) 245, 1025, 1506, 1580, 1716, 1721, 1814
StuI AGGCCT 1 cut(s) 1023
StyD4I CCNGG 5 cut(s) 252, 577, 777, 846, 2187
StyI CCWWGG 7 cut(s) 880, 1180, 1187, 1950, 2051, 2129, 2263
TaaI ACNGT 4 cut(s) 367, 745, 1337, 1862
TaiI ACGT 3 cut(s) 163, 262, 1606
TaqI TCGA 3 cut(s) 166, 820, 1620
TatI WGTACW 2 cut(s) 1308, 1638
TfiI GAWTC 1 cut(s) 1085
Tru1I TTAA 4 cut(s) 1371, 1997, 2180, 2184
Tru9I TTAA 4 cut(s) 1371, 1997, 2180, 2184
TscAI CASTG 4 cut(s) 131, 762, 1476, 2209
TseFI GTSAC 1 cut(s) 2297
TseI GCWGC 5 cut(s) 11, 121, 131, 1063, 1784
Tsp45I GTSAC 1 cut(s) 2297
TspGWI ACGGA 1 cut(s) 2070
TspRI CASTG 4 cut(s) 131, 762, 1476, 2209
Van91I CCANNNNNTGG 1 cut(s) 584
VpaK11BI GGWCC 3 cut(s) 87, 572, 1954
XagI CCTNNNNNAGG 1 cut(s) 1265
XapI RAATTY 5 cut(s) 385, 516, 933, 1797, 2117
XbaI TCTAGA 2 cut(s) 1505, 1715
XceI RCATGY 4 cut(s) 56, 1448, 1500, 2277
XmiI GTMKAC 2 cut(s) 1176, 1620
XmnI GAANNNNTTC 4 cut(s) 162, 414, 1515, 1963
XspI CTAG 7 cut(s) 245, 1025, 1506, 1580, 1716, 1721, 1814
ZrmI AGTACT 2 cut(s) 1310, 1640
Zsp2I ATGCAT 2 cut(s) 58, 1822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.