Rroxscaffold_5G00368960
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000472
Physical Location & Seq
Forward (+)
50721182 .. 50728148
6967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368960.1

Sequence Viewer

Length: 4224 bp
ATGGAGCTAACACAAGTTAAGAGAGACGTCCACTCATCGTTTCGACACCAAGCTTCGAGCTACTCAATCAAAGAGGAGGATGAGGAAACTCAGCTGCAGTGGGCTGCCATTGAGAGATTGCCTACATTCAGAAGGCTGAGGACCTCACTTTTCGACCTCGGTGATAGCGAAAATGGAAAAACCAGTGGCAAAGAGTGTGCAGGGAAGAAGGTGGTTGATGTTACCAAGTTGGGAGCAGATGAGAGGCATCTTTTCATTGAGAAGATCATAAAGCACATTGAGCATGATAATCTGAGGCTGCTACAAAAAATGAGAGAAAGGATAGACAGGGTGAATGTGAAATTGCCAACTGTGGAGGTGAGGTACAAGAGTTTGTGTGTGGAAGCCGAGTGTGAAGTAGTACAAGGAAAGCCGCTCCCGACGCTGTGGAACTCTCTTCTAAGCTTGTTATCAGTAATGTGGTGCAAGTCTCAAGATGCAAAGATTAGCGTTCTCACAGATGTCAGTGGCGTCATCAAACCTTCAAGGCTTACTCTCCTTCTTGGTCCCCCGGGGTGTGGTAAAACCACCTTCTTATTGGCACTTGCCGGAAAACTGGATAAATCCCTGAAGGTTGCAGGGGAGATTTCATACAATGGTTACAAGCTAGATGAGTTTGTTCCTCAAAAAACTTCAGCGTACATAAGCCAACACGACCTTCACGTACCTGAGATGACTGTAAGAGAAACAATCGAGTTTTCAGCCCGCTGTCAAGGTGTTGGAAGCAGAGCTGATATAATGCTAGAGGTTAGCAGGAGAGAAAAGGAAGCAGGAATTGTTCCTGATCCAGATATTGACACCTACATGAAGGCAATCTCAGTTGAAGGACAAAAGAAAAACCTCCAAACTGACTATGTGTTGAAGATGCTAGGACTAGATATCTGCAGTGACACAATGGTTGGTGATGCATTACAAAGAGGTATTTCGGGTGGCCAAAAGAAAAGGCTGACAACAGGAGAGATGATTGTCGGTCCCACAAAAGCCCTATTTATGGATGAAATATCAACTGGATTAGACAGCTCTACGACTTTTCAGATAGTCACATATCTACAGCAGTTGGTGCACATAACAGATACAACTGCATTGGTGTCACTTCTACAACCAGCACCTGAGACATTCGATTTATTTGATGATGTGATACTAATGGCAGAGGGGAAGATAGTTTACGATGGTCCTCGAAGTCTTGCACTTCAGTTTTTCGAAGATTGTGGTTTTAAGTGCCCACCAAGAAAGGGTGCTGCAGATTATCTTCAGGAGGTAATCTCAAAGAAGGATCAAGCACAATACTGGAAGCATGATAACATTCCCTATGATTATGTTTCTGTGGACAAATTCTCTCAGCTTTTCAGAGCAAGTTACTTGGGAAAGAAGTTAACTGATGAGCTCTCAAAACCATATGAGAAATCACCGGGCCAGGATAAGGCTTTATCATTTAGCATCTACTCTGTCAGAAAATGGGAATTGTTCAAAGCTTGCATGGGTAGAGAGCTGCTTCTTATGAAACGAAATTCCTTTGTTTATGTATTCAAAACAGCGCAGCTTGTCATCACTGCACTTTTGACAACGACAGTATTCATACGTACTCAGATGGATGTGGATTTGACAAGTGCAAATTATTTTATGGGTGCATTGTTCTATACACTTGTGAGACTTATGACCAATGGAGTTGCAGAACTGTCCTTGACTATCACTAGACTACCAGTGGTTGATAAGCAAAGAGCCTTCTATCTTTATCCAGCATGGTCCTATTCAATTCCAGCCTCTCTCCTGAAGATTCCATTTTCACTGAGTGATGCGGTGTTGTGGACAGCAATAACTTACTATGGTGTTGGGTATAGCCCTGAAATAAAAAGGTTCTTCTGCCAGCTCCTTGTGCTGTTTGCTCTGCATCTTGCATCAACATCCATGTGTCGTTTGATTGCAGTAATTTTCCGATCCATGGTTGTTGCATCAACTATTGGTACTTTAATCTTGTGGGGATTCTGGTGTTCTCCTATGACTTATGGGGAAATAGCTGCAAGTCTGAATGAATTCCATGCTCCCCGATGGCAAAAGGTTTCAAAGGGAAACACAACCTTGGGGAGTGAAATTCTAACCAATCATGGTTTGAACTTTGATAGCTACTTCTACTGGATATCAGTAGGGGCTTTATTCGGGTTCACAGCTATTTTCGATCTTGGATTTGTTTTAGCCTTAACTTACTTAAAATCTCCAAAGATGTCTCGTGCTATTATTTCGAAAAAAAGATTATCTCAACTCAAAGGACAAGATTCTTGGAACAAGACCGGTGCAAAGTCAGATAATGCATCAACTCCAGCTGATTTTTCCCAAACCATGGAAGAAACAGGGAAGATGGGTCTGCCATTTGAGCCTCTGACAATCTCATTTAAGGATGTGCAGTACAGTGTTGACATCCCACCGGAAATGAAAAGACACGGTTTCGATCAGAAAAAACTTCAGCTGCTTAAAGATATTACAGGAGCATTTAGGCCGGGAGTTCTTACAGCATTGATGGGAGTCAGTGGGGCTGGGAAAACAACTCTCATGGATGTTCTTTCGGGAAGGAAAACCGGAGGCACTATTGAAGGAGATATAAGAATAGGAGGCTATCCCAAAGTCCAGAAGACATTCGCTAGAATATCAGGTTACTGTGAACAATTTGATATACATTCTCCACACATCACAGTAGGAGAGTCGATTATGTTTTCAGCTTGGTTGAGGTTGCCACCCGAAATTGATCAAGACACAAAAGCTAAATTTGTAGAAGAAGTTATTAAAACAATTGAATTGGAGGATATAAGAGATTCTTTAGTTGGCATTCCTGGCCAAAGTGGCCTATCAACCGAACAGCGCAAAAGGCTAACAATTGCAGTTGAGCTTGTTTCCAATCCATCAATAATATTTATGGATGAACCTACATCAGGACTAGATGCCAGAGCAGCGGCAATTGTCATGCGTGCTGTGAAGAATGTAGTTGCCACAGGAAGAACAACTATTTGCACAATCCACCAACCTAGCATTGATATCTTTGAGGCTTTTGATGAGTTAATTCTGATGAAAACGGGAGGGCAAATTATCTATTCTGGAAGTCTGGGCCGTCATTCGAGTAATCTCATTGAATATTTTGAGGGTATTCCTGGTGTACCAAAGATCAAAGATAACTATAACCCCGCAACATGGATGTTAGAAGTTACTTCCTCTTCAGTAGAAGCAGAACTCGGTTTAGATTTTGCGAACATTTATAAAGAATCTACTCTGTATAAAGACACAGTTGAATTGGTGAGACAGATAAGTGAACCAAAGCCAGGTTCAAGAGCTTTGCAATTTTCCACCCAATTTCCACAAAATAGCTGGGTGCAGTTTAGGGCATGCTTATGGAAACAACACTTATCCTACTGGAGAAGTCCTGAATACAATCTAGCACGTTTCATGTTCATGACTGTTGCCTCAGTGTTGTTTGGTGCAATCTTCTGGCAAAAGGGGAAGGAAATAAATAATGAGCAGGATTTGCTGACTATACTTGGGTCCATGTACATTGCTGTAATATTCCTGGGAATAAACAATTGTTCAACAGTTCTTCCTTATGTGGCAACTGAGCGCACCGTTTTGTACCGCGAAAGATTTGCTGGGATGTACTCATCAAAGGCTTATTCCTTTGCACAGGTGGCCATGGAAATACCTTATACAATGTTGCAAGCAGTTTTATATGTGGTCATTACATATCCTACGATAGGCTACTATTGGACTGCTCCCAAGGTTTTTTGGTACTTCTATGCAACCTTCTGTACATTTCTATACTTTGTATACCTTGGGATGTTGTTAGTTTCTTTGAGCTCAGACATGGAAGTAGCTTCGATATTGGCCACTGCAATCTACACCATATTGAATCTTTTCTCCGGCTTCCTCATGCCTGGACCGAAAATTCCGAAGTGGTGGATTTGGTGCTACTGGATCTGTCCTACATCATGGTCACTAAATGGCCTCCTGACTTCACAATATGGAGACATGGACAAAGAGATAATGATTTTTGGAGAGCATAAAACAGTTGCTTCCTTCCTAAAAGATTATTATGGTTTTCATCATGATCTTTTACCCCTTGTGGCTATTGCTCTGATTACCTTCCCAATTGCTTTTGCTTTTCTCTTTTCCTATTTTATAGGGAGATTAAATTTCCAAAGGCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

1407

Amino Acids

158.58

Weight (kDa)

8.21

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 165 - 346 2.9e-16 ABC transporter
ABC2_membrane PF01061 501 - 671 1.3e-29 ABC-2 type transporter
PDR_assoc PF08370 696 - 758 2.8e-23 Plant PDR ABC transporter associated
ABC_tran PF00005 835 - 987 2.3e-20 ABC transporter
ABC2_membrane PF01061 1133 - 1346 6.3e-58 ABC-2 type transporter
ABC2_membrane_3 PF12698 1183 - 1391 7e-07 ABC-2 family transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3282
AatII GACGTC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 2374
AccBSI CCGCTC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 3843
AccII CGCG 1 cut(s) 3654
AciI CCGC 6 cut(s) 413, 745, 1835, 2981, 3210, 3652
AclWI GGATC 4 cut(s) 818, 1320, 1968, 3998
AcoI YGGCCR 4 cut(s) 970, 2863, 3705, 3900
AcsI RAATTY 7 cut(s) 1370, 1546, 2069, 2127, 2795, 3960, 4207
AcuI CTGAAG 7 cut(s) 629, 657, 1214, 1274, 1829, 2480, 3225
AcyI GRCGYC 2 cut(s) 27, 510
AdeI CACNNNGTG 1 cut(s) 1829
AgeI ACCGGT 1 cut(s) 2324
AjnI CCWGG 6 cut(s) 1452, 2860, 3175, 3343, 3588, 3949
AjuI GAANNNNNNNTTGG 4 cut(s) 681, 713, 3331, 3363
Alw21I GWGCWC 3 cut(s) 1104, 1425, 3875
Alw26I GTCTC 7 cut(s) 18, 474, 1145, 1681, 2265, 3316, 4035
Alw44I GTGCAC 1 cut(s) 1100
AlwI GGATC 4 cut(s) 818, 1320, 1968, 3998
AlwNI CAGNNNCTG 1 cut(s) 1148
Ama87I CYCGRG 1 cut(s) 550
AoxI GGCC 9 cut(s) 970, 1450, 2528, 2863, 2872, 3133, 3705, 3900, 4018
ApaLI GTGCAC 1 cut(s) 1100
ApeKI GCWGC 9 cut(s) 94, 104, 298, 1277, 1528, 1576, 2054, 2500, 2978
ApoI RAATTY 7 cut(s) 1370, 1546, 2069, 2127, 2795, 3960, 4207
AsiGI ACCGGT 1 cut(s) 2324
Asp700I GAANNNNTTC 3 cut(s) 2069, 2666, 3929
AspLEI GCGC 3 cut(s) 1576, 2892, 3639
AspS9I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3133, 3564, 3953
AsuC2I CCSGG 4 cut(s) 551, 552, 1449, 2532
AsuHPI GGTGA 6 cut(s) 173, 343, 370, 953, 1437, 3331
AsuII TTCGAA 2 cut(s) 1239, 2276
AvaI CYCGRG 1 cut(s) 550
AvaII GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3564, 3953
BaeGI GKGCMC 2 cut(s) 1104, 1262
BaeI ACNNNNGTAYC 2 cut(s) 355, 388
BalI TGGCCA 4 cut(s) 972, 2865, 3707, 3902
BanII GRGCYC 2 cut(s) 1425, 3875
BarI GAAGNNNNNNTAC 2 cut(s) 1187, 1219
BauI CACGAG 1 cut(s) 2262
BbsI GAAGAC 1 cut(s) 2669
Bbv12I GWGCWC 3 cut(s) 1104, 1425, 3875
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 9 cut(s) 81, 91, 285, 1264, 1515, 1588, 2041, 2487, 2990
BccI CCATC 6 cut(s) 1202, 1621, 2079, 2386, 2545, 2938
BceAI ACGGC 1 cut(s) 3120
BcgI CGANNNNNNTGC 2 cut(s) 3644, 3678
BciT130I CCWGG 6 cut(s) 1454, 2862, 3177, 3345, 3590, 3951
BclI TGATCA 1 cut(s) 2776
BcnI CCSGG 4 cut(s) 551, 552, 1449, 2532
BcoDI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2265, 3316, 4035
BfaI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2673, 2966, 3054, 3458
BfmI CTRYAG 4 cut(s) 95, 922, 1088, 1278
BglI GCCNNNNNGGC 1 cut(s) 2871
Bme18I GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3564, 3953
BmeT110I CYCGRG 1 cut(s) 550
BmgT120I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3133, 3564, 3953
BmiI GGNNCC 3 cut(s) 547, 1012, 3565
BpiI GAAGAC 1 cut(s) 2669
BplI GAGNNNNNCTC 2 cut(s) 1286, 1318
BpmI CTGGAG 2 cut(s) 2337, 3457
Bpu10I CCTNAGC 1 cut(s) 137
Bpu14I TTCGAA 2 cut(s) 1239, 2276
BpuEI CTTGAG 1 cut(s) 456
BpuMI CCSGG 4 cut(s) 551, 552, 1449, 2532
BsaAI YACGTR 2 cut(s) 703, 1619
BsaHI GRCGYC 2 cut(s) 27, 510
BsaWI WCCGGW 3 cut(s) 2324, 2458, 2609
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bse118I RCCGGY 1 cut(s) 2324
Bse1I ACTGG 8 cut(s) 183, 600, 1051, 1331, 1739, 2174, 3440, 3992
Bse3DI GCAATG 1 cut(s) 3573
BseBI CCWGG 6 cut(s) 1454, 2862, 3177, 3345, 3590, 3951
BseMI GCAATG 1 cut(s) 3573
BseNI ACTGG 8 cut(s) 183, 600, 1051, 1331, 1739, 2174, 3440, 3992
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 2 cut(s) 1104, 1262
BseXI GCAGC 9 cut(s) 81, 91, 285, 1264, 1515, 1588, 2041, 2487, 2990
BseYI CCCAGC 3 cut(s) 2567, 3390, 3665
BsgI GTGCAG 4 cut(s) 219, 1575, 2456, 3416
Bsh1236I CGCG 1 cut(s) 3654
BshFI GGCC 9 cut(s) 972, 1452, 2530, 2865, 2874, 3135, 3707, 3902, 4020
BshTI ACCGGT 1 cut(s) 2324
BsiHKAI GWGCWC 3 cut(s) 1104, 1425, 3875
BsiHKCI CYCGRG 1 cut(s) 550
BsiSI CCGG 8 cut(s) 551, 588, 1448, 2325, 2459, 2531, 2610, 3936
BslFI GGGAC 2 cut(s) 531, 996
BsmAI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2265, 3316, 4035
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 2 cut(s) 531, 996
BsmI GAATGC 1 cut(s) 2856
BsnI GGCC 9 cut(s) 972, 1452, 2530, 2865, 2874, 3135, 3707, 3902, 4020
BsoBI CYCGRG 1 cut(s) 550
Bsp119I TTCGAA 2 cut(s) 1239, 2276
Bsp1286I GDGCHC 4 cut(s) 1104, 1262, 1425, 3875
Bsp1407I TGTACA 2 cut(s) 3570, 3824
Bsp19I CCATGG 3 cut(s) 1977, 2373, 3708
BspACI CCGC 6 cut(s) 413, 745, 1835, 2981, 3210, 3652
BspANI GGCC 9 cut(s) 972, 1452, 2530, 2865, 2874, 3135, 3707, 3902, 4020
BspFNI CGCG 1 cut(s) 3654
BspHI TCATGA 2 cut(s) 3474, 4120
BspLI GGNNCC 3 cut(s) 547, 1012, 3565
BspMAI CTGCAG 3 cut(s) 99, 926, 1282
BspPI GGATC 4 cut(s) 818, 1320, 1968, 3998
BspT104I TTCGAA 2 cut(s) 1239, 2276
BsrBI CCGCTC 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 3573
BsrFI RCCGGY 1 cut(s) 2324
BsrGI TGTACA 2 cut(s) 3570, 3824
BsrI ACTGG 8 cut(s) 183, 600, 1051, 1331, 1739, 2174, 3440, 3992
BssAI RCCGGY 1 cut(s) 2324
BssNAI GTATAC 1 cut(s) 3844
BssNI GRCGYC 2 cut(s) 27, 510
BssSI CACGAG 1 cut(s) 2262
BssT1I CCWWGG 6 cut(s) 1977, 2115, 2373, 3708, 3792, 3847
Bst1107I GTATAC 1 cut(s) 3844
Bst2BI CACGAG 1 cut(s) 2262
Bst2UI CCWGG 6 cut(s) 1454, 2862, 3177, 3345, 3590, 3951
Bst6I CTCTTC 2 cut(s) 441, 3244
BstACI GRCGYC 2 cut(s) 27, 510
BstAPI GCANNNNNTGC 2 cut(s) 1099, 3547
BstAUI TGTACA 2 cut(s) 3570, 3824
BstBAI YACGTR 2 cut(s) 703, 1619
BstBI TTCGAA 2 cut(s) 1239, 2276
BstC8I GCNNGC 6 cut(s) 745, 1513, 1904, 2997, 3409, 3735
BstDSI CCRYGG 3 cut(s) 1977, 2373, 3708
BstENI CCTNNNNNAGG 2 cut(s) 2958, 3768
BstFNI CGCG 1 cut(s) 3654
BstHHI GCGC 3 cut(s) 1576, 2892, 3639
BstMAI GTCTC 7 cut(s) 18, 474, 1145, 1681, 2265, 3316, 4035
BstNI CCWGG 6 cut(s) 1454, 2862, 3177, 3345, 3590, 3951
BstNSI RCATGY 1 cut(s) 3411
BstSFI CTRYAG 4 cut(s) 95, 922, 1088, 1278
BstSLI GKGCMC 2 cut(s) 1104, 1262
BstSNI TACGTA 1 cut(s) 1619
BstUI CGCG 1 cut(s) 3654
BstV1I GCAGC 9 cut(s) 81, 91, 285, 1264, 1515, 1588, 2041, 2487, 2990
BstV2I GAAGAC 1 cut(s) 2669
BstX2I RGATCY 1 cut(s) 3990
BstYI RGATCY 1 cut(s) 3990
BstZ17I GTATAC 1 cut(s) 3844
BsuRI GGCC 9 cut(s) 972, 1452, 2530, 2865, 2874, 3135, 3707, 3902, 4020
BtgI CCRYGG 3 cut(s) 1977, 2373, 3708
BtsI GCAGTG 4 cut(s) 104, 931, 1587, 3903
Cac8I GCNNGC 6 cut(s) 745, 1513, 1904, 2997, 3409, 3735
CaiI CAGNNNCTG 1 cut(s) 1148
CciI TCATGA 2 cut(s) 3474, 4120
CfoI GCGC 3 cut(s) 1576, 2892, 3639
Cfr10I RCCGGY 1 cut(s) 2324
Cfr13I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3133, 3564, 3953
Cfr9I CCCGGG 1 cut(s) 550
CseI GACGC 2 cut(s) 430, 499
CspAI ACCGGT 1 cut(s) 2324
DraIII CACNNNGTG 1 cut(s) 1829
EaeI YGGCCR 4 cut(s) 970, 2863, 3705, 3900
Eam1104I CTCTTC 2 cut(s) 441, 3244
EarI CTCTTC 2 cut(s) 441, 3244
Ecl136II GAGCTC 2 cut(s) 1423, 3873
Eco105I TACGTA 1 cut(s) 1619
Eco130I CCWWGG 6 cut(s) 1977, 2115, 2373, 3708, 3792, 3847
Eco24I GRGCYC 2 cut(s) 1425, 3875
Eco32I GATATC 3 cut(s) 919, 2175, 3064
Eco47I GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3564, 3953
Eco53kI GAGCTC 2 cut(s) 1423, 3873
Eco57I CTGAAG 7 cut(s) 629, 657, 1214, 1274, 1829, 2480, 3225
Eco88I CYCGRG 1 cut(s) 550
EcoICRI GAGCTC 2 cut(s) 1423, 3873
EcoNI CCTNNNNNAGG 2 cut(s) 2958, 3768
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 2069
EcoRII CCWGG 6 cut(s) 1452, 2860, 3175, 3343, 3588, 3949
EcoRV GATATC 3 cut(s) 919, 2175, 3064
EcoT14I CCWWGG 6 cut(s) 1977, 2115, 2373, 3708, 3792, 3847
EcoT22I ATGCAT 2 cut(s) 949, 2347
EcoT38I GRGCYC 2 cut(s) 1425, 3875
ErhI CCWWGG 6 cut(s) 1977, 2115, 2373, 3708, 3792, 3847
Esp3I CGTCTC 1 cut(s) 18
FalI AAGNNNNNCTT 2 cut(s) 2830, 2862
FaqI GGGAC 2 cut(s) 531, 996
FauI CCCGC 2 cut(s) 752, 3217
FauNDI CATATG 1 cut(s) 1435
FbaI TGATCA 1 cut(s) 2776
FblI GTMKAC 1 cut(s) 3843
FriOI GRGCYC 2 cut(s) 1425, 3875
FspBI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2673, 2966, 3054, 3458
GlaI GCGC 3 cut(s) 1575, 2891, 3638
GsaI CCCAGC 3 cut(s) 2571, 3394, 3669
GsuI CTGGAG 2 cut(s) 2337, 3457
HaeIII GGCC 9 cut(s) 972, 1452, 2530, 2865, 2874, 3135, 3707, 3902, 4020
HapII CCGG 8 cut(s) 551, 588, 1448, 2325, 2459, 2531, 2610, 3936
HgaI GACGC 2 cut(s) 430, 499
HhaI GCGC 3 cut(s) 1576, 2892, 3639
Hin1I GRCGYC 2 cut(s) 27, 510
Hin6I GCGC 3 cut(s) 1574, 2890, 3637
HinP1I GCGC 3 cut(s) 1574, 2890, 3637
HincII GTYRAC 2 cut(s) 1413, 2449
HindII GTYRAC 2 cut(s) 1413, 2449
HindIII AAGCTT 3 cut(s) 51, 442, 1509
HinfI GANTC 8 cut(s) 1813, 2019, 2309, 2556, 2732, 2843, 3287, 3925
HpaI GTTAAC 1 cut(s) 1413
HpaII CCGG 8 cut(s) 551, 588, 1448, 2325, 2459, 2531, 2610, 3936
HphI GGTGA 6 cut(s) 173, 343, 370, 953, 1437, 3331
Hpy99I CGWCG 1 cut(s) 424
HpyCH4IV ACGT 4 cut(s) 27, 702, 1618, 3463
HpySE526I ACGT 4 cut(s) 27, 702, 1618, 3463
Hsp92I GRCGYC 2 cut(s) 27, 510
HspAI GCGC 3 cut(s) 1574, 2890, 3637
Ksp22I TGATCA 1 cut(s) 2776
KspAI GTTAAC 1 cut(s) 1413
LmnI GCTCC 7 cut(s) 4, 233, 420, 1911, 2083, 2519, 3793
Lsp1109I GCAGC 9 cut(s) 81, 91, 285, 1264, 1515, 1588, 2041, 2487, 2990
MaeI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2673, 2966, 3054, 3458
MaeII ACGT 4 cut(s) 27, 702, 1618, 3463
MaeIII GTNAC 9 cut(s) 220, 638, 926, 1078, 1128, 1394, 2684, 3229, 4008
MbiI CCGCTC 1 cut(s) 415
MfeI CAATTG 5 cut(s) 2820, 2904, 2985, 3601, 4164
MflI RGATCY 1 cut(s) 3990
MhlI GDGCHC 4 cut(s) 1104, 1262, 1425, 3875
MlsI TGGCCA 4 cut(s) 972, 2865, 3707, 3902
MluNI TGGCCA 4 cut(s) 972, 2865, 3707, 3902
MlyI GAGTC 2 cut(s) 2565, 2741
MmeI TCCRAC 1 cut(s) 739
Mox20I TGGCCA 4 cut(s) 972, 2865, 3707, 3902
Mph1103I ATGCAT 2 cut(s) 949, 2347
MroXI GAANNNNTTC 3 cut(s) 2069, 2666, 3929
MscI TGGCCA 4 cut(s) 972, 2865, 3707, 3902
MslI CAYNNNNRTG 4 cut(s) 842, 1945, 3412, 3473
Msp20I TGGCCA 4 cut(s) 972, 2865, 3707, 3902
MspA1I CMGCKG 5 cut(s) 94, 747, 2357, 2500, 2981
MspI CCGG 8 cut(s) 551, 588, 1448, 2325, 2459, 2531, 2610, 3936
MunI CAATTG 5 cut(s) 2820, 2904, 2985, 3601, 4164
Mva1269I GAATGC 1 cut(s) 2856
MvaI CCWGG 6 cut(s) 1454, 2862, 3177, 3345, 3590, 3951
MvnI CGCG 1 cut(s) 3654
NciI CCSGG 4 cut(s) 551, 552, 1449, 2532
NcoI CCATGG 3 cut(s) 1977, 2373, 3708
NdeI CATATG 1 cut(s) 1435
NlaIV GGNNCC 3 cut(s) 547, 1012, 3565
NmeAIII GCCGAG 1 cut(s) 412
NmuCI GTSAC 4 cut(s) 926, 1078, 1128, 4008
NsiI ATGCAT 2 cut(s) 949, 2347
NspI RCATGY 1 cut(s) 3411
NspV TTCGAA 2 cut(s) 1239, 2276
PaeI GCATGC 1 cut(s) 3411
PagI TCATGA 2 cut(s) 3474, 4120
PcsI WCGNNNNNNNCGW 2 cut(s) 165, 699
PctI GAATGC 1 cut(s) 2856
PdmI GAANNNNTTC 3 cut(s) 2069, 2666, 3929
PfeI GAWTC 6 cut(s) 1813, 2019, 2309, 2843, 3287, 3925
PflMI CCANNNNNTGG 1 cut(s) 2374
PinAI ACCGGT 1 cut(s) 2324
PleI GAGTC 2 cut(s) 2564, 2740
PpsI GAGTC 2 cut(s) 2564, 2740
Ppu21I YACGTR 2 cut(s) 703, 1619
PpuMI RGGWCCY 1 cut(s) 141
PsiI TTATAA 1 cut(s) 3282
Psp124BI GAGCTC 2 cut(s) 1425, 3875
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 6 cut(s) 1452, 2860, 3175, 3343, 3588, 3949
PspFI CCCAGC 3 cut(s) 2567, 3390, 3665
PspGI CCWGG 6 cut(s) 1452, 2860, 3175, 3343, 3588, 3949
PspN4I GGNNCC 3 cut(s) 547, 1012, 3565
PspPI GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3133, 3564, 3953
PspPPI RGGWCCY 1 cut(s) 141
PstI CTGCAG 3 cut(s) 99, 926, 1282
PstNI CAGNNNCTG 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 3990
PvuII CAGCTG 3 cut(s) 94, 2357, 2500
RseI CAYNNNNRTG 4 cut(s) 842, 1945, 3412, 3473
SacI GAGCTC 2 cut(s) 1425, 3875
Sau96I GGNCC 9 cut(s) 141, 545, 1010, 1211, 1450, 1782, 3133, 3564, 3953
SchI GAGTC 2 cut(s) 2565, 2741
SduI GDGCHC 4 cut(s) 1104, 1262, 1425, 3875
SfcI CTRYAG 4 cut(s) 95, 922, 1088, 1278
SfiI GGCCNNNNNGGCC 1 cut(s) 2871
SfuI TTCGAA 2 cut(s) 1239, 2276
SinI GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3564, 3953
SmaI CCCGGG 1 cut(s) 552
SmiMI CAYNNNNRTG 4 cut(s) 842, 1945, 3412, 3473
SmlI CTYRAG 1 cut(s) 471
SmoI CTYRAG 1 cut(s) 471
SnaBI TACGTA 1 cut(s) 1619
SphI GCATGC 1 cut(s) 3411
SsiI CCGC 6 cut(s) 413, 745, 1835, 2981, 3210, 3652
SspI AATATT 3 cut(s) 2940, 3161, 3585
SspMI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2673, 2966, 3054, 3458
SstI GAGCTC 2 cut(s) 1425, 3875
StyI CCWWGG 6 cut(s) 1977, 2115, 2373, 3708, 3792, 3847
TaiI ACGT 4 cut(s) 30, 705, 1621, 3466
TaqII GACCGA 2 cut(s) 998, 3970
TatI WGTACW 5 cut(s) 400, 2439, 3570, 3672, 3824
TauI GCSGC 2 cut(s) 415, 2984
TfiI GAWTC 6 cut(s) 1813, 2019, 2309, 2843, 3287, 3925
TseFI GTSAC 4 cut(s) 926, 1078, 1128, 4008
TseI GCWGC 9 cut(s) 94, 104, 298, 1277, 1528, 1576, 2054, 2500, 2978
Tsp45I GTSAC 4 cut(s) 926, 1078, 1128, 4008
TspMI CCCGGG 1 cut(s) 550
Van91I CCANNNNNTGG 1 cut(s) 2374
VneI GTGCAC 1 cut(s) 1100
VpaK11BI GGWCC 7 cut(s) 141, 545, 1010, 1211, 1782, 3564, 3953
XagI CCTNNNNNAGG 2 cut(s) 2958, 3768
XapI RAATTY 7 cut(s) 1370, 1546, 2069, 2127, 2795, 3960, 4207
XceI RCATGY 1 cut(s) 3411
XcmI CCANNNNNNNNNTGG 2 cut(s) 574, 3387
XmaI CCCGGG 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 3843
XmnI GAANNNNTTC 3 cut(s) 2069, 2666, 3929
XspI CTAG 9 cut(s) 647, 782, 908, 914, 1731, 2673, 2966, 3054, 3458
ZraI GACGTC 1 cut(s) 28
Zsp2I ATGCAT 2 cut(s) 949, 2347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.