RchiOBHm_Chr4g0427321
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
52597165 .. 52604524
7360 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39625

Sequence Viewer

Length: 4452 bp
ATGGCTCAGTTGGCAGGAGCAGATGAAATTGAGTCTTTCAGGATAGAGCTAGCAGAGATTGGGAGGAGCATTAGAGCCTCCTTTCGAAGCCATGCCTCAAGTTTCCGAAGCACCTCTACTGTCAATGCCGGAGACAGTAGAATGGACGATGATGAAGAATATTATGACTTGCAATGGGCTGCGGTTGAGAGACTACCAACTTTTGAGAGGATCAAATCAGCTTTGTTTGATGATCATGATGGCGCATCGGCAAAAGGAGATGTTAAGGGGACTAGGGTGGTTGATGTTACGAAGATTGGAGCTCAAGAAAGGCGTGTTTTCATAGAGAAGCTCATCAAACATATTGAGAATGATAATCTTCAGCTGTTGCAGAAAATTAGAAGAAGAATAGACAAGGTTGGTGTGAAGTTGCCCACTGTTGAAGTAAGATACAAGAATCTTTGTGTGGAAGCAGAGTGTAAGGTAGTTCACGGCAAGCCCCTCCCCACTCTATGGAATTCTCTAAAGAGTTTGATTCCGGACATTACTGAACTAGTAGGTTCAAAAAAACGTGAAGCGAAGATAAGCATCCTCAAAGATGTCAGTGGCATTATTAAGCCGGGAAGAATGACCTTATTGCTTGGCCCTCCGGGTTGTGGCAAAACCACATTACTGATGGCACTCTCAGGAAAGCTAAGCCATTCTCTCAAGGTTTCTGGCGAAATTAGTTACAATGGTTATAGACTTGAAGAATTTGTTCCAGAGAAAACCTCAGCCTATGTAGGCCAATATGATATGCATATTCCAGAGATCACTGTAAGGGAAACACTAGATTTCTCTGCAGGCTGTCAAGGTGTAGGAAGCCGACCCGGTAAGCATTTTCTTGCAATAAATTTTGACCTTGAAAACAGTTATCAAGCAGGAATAGTCCCGGATCCTGATGTAGATGCTTACATGAAGGTACAACTGGGATGCCTTGGTGCAATTTTCTGCTGTATGTATTCCATTAGTCCAAAAGTGACGAACAATTTTCTCTTGCAGGCCATATCTGTTAATGGACTGAAAAGTACACTTCAAACTGACTATATTCTAAAGATACTTGGCCTTGATATATGTGCTGACACGCTGGTTGGAGATCCCATAAGAAGAGGAATATCTGGTGGTCAAAAGAAAAGGTTAACTACAGGGGAGATGATTGTTGGACCTGCAAAAGCTGTTTTCATGGATGAAATATCTAATGGCTTAGATAGTTCCACAACTTTCCAAATTGTTTCTTGTCTTCAACATTTTGTGCATATAACAGATGCTACATCATTGATCTCACTTCTTCAGCCTGCACCAGAGACGTTCAATCTCTTTGATGATGTTCTCTTAATGGCAGAAGGGAAGATTGTGTATCATGGACCAAGAACTTCTATCCTCCAATTTTTTGAGGAGTGTGGATTTAAGTGTCCAGAAAGAAAAGGTGTTGCTGACTTCCTTCAGGAGGTCATCTCTAGAAAAGATCAAGCACAGTTTTGGGACGGCACAGAAAAACCATATAGCTACTTTTCTGTTGATCAGTTCATTGAGAAATTCAAGGATTGCCATCTTGGCAGGAAGCTAGATGTGGATCTCTCAGAGCCATTCGATAAGTCTCAAAGCCACAGAGATGCTCTATCCTTTAAAAGATACTCATTACCTAAATGGGAACTGTTTAAAGCATGCACAAGGAGGGAATTTCTTTTAATGAAAAGGAATTCTTTCATTTATGTTTTCAAATCAGTTCAGCTAGTCATCATTTCTTCTATAACGATGACTGTTTTCCTTCGAACTCAAATGGCTATTGACACGATCCATGCAAATTATTATATGGGTTCTTTGTTCTTTGCACTTGTGATACTTCTTGTTGATGGATTCCCAGAATTGTCAATGACTGTCTCAAGAATTGTGGTTTTCTACAAACAGAAAGAGTTGTGTTTTTACCCTGCTTGGGCTTATGCGATCCCGGCTGCCATCCTAAAGGTTCCACTTTCGTTCTTGGAGGCTTTTGTTTGGACTGCTCTTACATACTATGTTATTGGTTACAGCCCTGAGGTTGGAAGGTTCTTCCGCCATTTCCTTCTACTCTTTGCTATGCACCTAACATCGATATCCTTGTTTCGGTTTATTGCTTCAGTTTTCCAAACTGTCGGTCCTTCTATGACAGCTGGTGTTTTATCAATATTGTTTGTTATGTTATTTGGTGGCTTTGTTATGCCAAAGCCTTATATGCCAGTTTGGTTGAAGTGGGGATTTTGGGTGTCTCCTTTGACATATGGAGAAATAGGCATAACAGTTAATGAATTTCTGGCACCTCGGTGGGAAAAGGTGTCTGGAAACACAACTCTTGGGAAACAAGTGCTGGAAAGCCGCGGATTGCATTTCGATGACTATTTTTATTGGATATCAGTTGGTGCTTTAATGGGATTCACATTACTATTCAATATTGGTTTCACCTTGGCTTTAACTTTCTTGAAGTCTCCTGGAAAGTCTCTTTCTCTTATTTCTTATGAAAAGTACCATCAACTACAAGGACAAAGAGACGACAGAGGCAGTTTAGATGCAGAGGGAAAATCCACCGGTGAACCTAAGACTAGTGTAGAACCTAAGAAGGGAAGGATGGTTTTACCATTTGAGCCCCTAACTGTTACATTCCAAGATGTACAATACTATGTTGACACCCCTTTGGAAATGAGAAAGGGAGGCTTTGAGCATAACAAGCTCCAGCTCCTATCTGATATTACAGGTGCATTCAGGCCAGGTGTTCTGACAGCATTAATGGGTGTCAGCGGAGCTGGCAAAACAACTCTCATGGATGTTCTTTGTGGACGAAAAACCGGTGGTACAATTGAAGGAGAAATAAGAATCAGTGGGTATCCTAAGGTTCAAGACACATTTGCAAGGATATCAGGCTACTGTGAGCAAAATGACATACATTCTCCACAAATAACTGTGGAAGAATCAGTAGTATATTCTGCTTGGTTGCGGCTCCCGTCTCAGATTGATTCAAAGACCAAAGCAGAATTTGTAAACGAGGTTCTTGAAACTATTGAACTTGATGGGATTAAAGATTCCTTAGTAGGCATGGCAGGAGTTGGTGGTTTATCCACTGAGCAACGTAAACGGTTGACCCTAGCTGTGGAACTTGTAGCCAATCCATCTATCATGTTCATGGATGAACCAACTTCTGGTTTAGATGCACGGGCGGCTGCTATCGTTATGAGAGCAGTGAAGAATGTTGTTGCAACAGGAAGAACAGTTGTTTGCACCATCCATCAACCAAGTATTGACATTTTTGAGGCATTTGATGAGTTGATTCTCATGAAAATTGGAGGACGCATAATCTATTCTGGCCAACTTGGACGGCACTCAAGCATGGTTATTGAGTATCTTGAGAGTATCCCTGGGGTGCCCTCAATCAAAGACAATTACAATCCGGCAACATGGATGTTAGAAGTTACTTCAAAATCTGCAGAAGCTGACCTTGGTATAGATTTTGCACAAATTTATAGGGAATCGGCCTTGTATGAGAAGAACAAGGAGTTAGTCAAGCAAGCGAGTTCACCGTCTCCTGGTTCAAAGGATTTGGAGTTTCCTACCCGCTATCCACTAAATGGTTGGGGGCAGTTCAAAGCGTGCTTTTGGAAACAGAATTTGTCTTATTGGAGAAGTCCCTCATATAATCTGGCACGGATCCTTTTCATGTGTTTCTCAGCTGTGTTGTTTGGAACACTGTACTGGAATCAAGGAGAGAAAATAAATAACCAGCAGGAGCTCTTCAATGTGTTTGGTTCAATGTTCGTGGAAATAATCTTCTTTGGCATTTACAATAGCACAACAGTTCTACCATTTGTTGCAACGGAACGGAATGTTCTGTATCGAGAAAGATATGCAGGAATGTTCTCTTCATGGGCCTATTCATTCGCACAGGTCCTGGTTGAGGTTCCCTACTCATTCACTCAAGCAGTTCTTTATGTGGTCATCACATACCCGATGATTGGCTACCACTTGTCTGCCTATAAGATATTTTGGTCATTCTATAGCATGTTCTGTGTACTACTATACTTCAACTACCTAGGGATGCTGCTGGTGTCCTTGACACCAAATGTTCAAGTGGCTGCAATTGTGGCGTCATCTTCCTACACAATGCTGAATTTGTTTTCAGGGTTCATTGTTCCGGGACCACAAATCCCAAAGTGGTGGCTCTGGCTGTATTATTTGTCTCCTACATCATGGGCACTGAACGGAATGCTTACTTCGCAGTATGGAGATGTGCAGAAAGAAATCGTGGTGTTTGGAGAGACGAAAACTGTTGCTGCTTTTTTAGAAGATTACTTTGGGTATCACCACAACCTGTTAGGCCTTGTCGGTGTTGTTCAGCTTCTCTTCCCCATTGTGTTTGCTTCTCTGTTTGCATACTTCATTGGGAAACTAAACTTCCAAAAGAGATAA

Protein Analysis

1483

Amino Acids

166.72

Weight (kDa)

7.28

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 191 - 404 3.1e-16 ABC transporter
ABC2_membrane PF01061 558 - 769 5e-42 ABC-2 type transporter
PDR_assoc PF08370 774 - 832 2.5e-25 Plant PDR ABC transporter associated
ABC_tran PF00005 911 - 1063 1.6e-20 ABC transporter
ABC2_membrane PF01061 1209 - 1422 2.1e-56 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15215 AT4G15230 AT4G15230 AT4G15230 AT4G15230 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15233 AT4G15236
fragaria_vesca FvH4_4g21360 FvH4_4g21360 FvH4_4g21390 FvH4_6g49431 FvH4_6g49450
malus_domestica MD09G1044300.v1.1 MD16G1137900.v1.1 MD16G1138000.v1.1
prunus_persica Prupe.1G106800_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.1G106900_v2.0.a1 Prupe.3G273300_v2.0.a1
pyrus_communis pycom111g03460 pycom16g12210
rosa_chinensis RchiOBHm_Chr2g0169331 RchiOBHm_Chr2g0169361 RchiOBHm_Chr2g0169371 RchiOBHm_Chr2g0169381 RchiOBHm_Chr2g0169411 RchiOBHm_Chr4g0427141 RchiOBHm_Chr4g0427321
rosa_laevigata RLG00000007252 RLG00000007258 RLG00000013974 RLG00000021856 RLG00000021857 RLG00000021858 RLG00000021859
rosa_multiflora Rmu_sc0000648.1_g000007 Rmu_sc0000648.1_g000009 Rmu_sc0003813.1_g000016 Rmu_sc0009165.1_g000008 Rmu_sc0022554.1_g000001
rosa_roxburghii Rroxscaffold_2G00082200 Rroxscaffold_2G00082230 Rroxscaffold_5G00368960 Rroxscaffold_5G00369010 Rroxscaffold_7G00200390
rosa_rugosa Rorug02G0539500 Rorug02G0539600 Rorug02G0539700 Rorug04G0216400 Rorug04G0216500 Rorug04G0216500 Rorug04G0216600
rosa_samantha Rh2AG610800 Rh2AG611000 Rh2AG611100 Rh2CG592800 Rh2CG593000 Rh2CG593200 Rh2DG634900 Rh2DG635100 Rh2DG635200 Rh2DG635400 Rh4AG272200 Rh4AG272900 Rh4DG275600 Rh4DG276000
rosa_wichuraiana Rw2G050640 Rw2G050660 Rw2G050670 Rw2G050680 Rw4G023610 Rw4G023680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1192
AccB1I GGYRCC 2 cut(s) 2311, 3409
AccB7I CCANNNNNTGG 3 cut(s) 492, 3188, 3614
AccII CGCG 1 cut(s) 2373
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 8 cut(s) 182, 2071, 2371, 2373, 2790, 2986, 3206, 3601
AclWI GGATC 9 cut(s) 218, 908, 921, 1109, 1599, 1807, 1957, 3688, 3701
AcoI YGGCCR 1 cut(s) 3352
AcuI CTGAAG 4 cut(s) 344, 1292, 1445, 2118
AcyI GRCGYC 1 cut(s) 4130
AfaI GTAC 7 cut(s) 942, 1048, 2519, 2664, 2845, 3737, 4056
AgeI ACCGGT 2 cut(s) 2579, 2837
AhlI ACTAGT 2 cut(s) 532, 2594
AjnI CCWGG 5 cut(s) 2482, 2758, 3403, 3571, 3933
AjuI GAANNNNNNNTTGG 4 cut(s) 3468, 3500, 4320, 4352
AleI CACNNNNGTG 1 cut(s) 2317
Alw21I GWGCWC 2 cut(s) 304, 3777
AlwI GGATC 9 cut(s) 218, 908, 921, 1109, 1599, 1807, 1957, 3688, 3701
AlwNI CAGNNNCTG 2 cut(s) 3479, 3934
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 9 cut(s) 622, 763, 1020, 1081, 2756, 3352, 3519, 3912, 4360
ApeKI GCWGC 6 cut(s) 179, 1970, 3209, 4084, 4118, 4316
ArsI GACNNNNNNTTYG 2 cut(s) 2137, 2169
AseI ATTAAT 1 cut(s) 2777
AsiGI ACCGGT 2 cut(s) 2579, 2837
Asp700I GAANNNNTTC 2 cut(s) 735, 1721
AspA2I CCTAGG 1 cut(s) 4075
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 7 cut(s) 623, 1181, 1382, 2153, 3912, 3931, 4181
AsuC2I CCSGG 6 cut(s) 600, 630, 849, 911, 1967, 4179
AsuHPI GGTGA 4 cut(s) 2446, 2594, 3555, 4337
AsuII TTCGAA 2 cut(s) 85, 1789
AsuNHI GCTAGC 1 cut(s) 49
AvaII GGWCC 5 cut(s) 1181, 1382, 2153, 3931, 4181
AvrII CCTAGG 1 cut(s) 4075
AxyI CCTNAGG 2 cut(s) 2052, 2880
BaeGI GKGCMC 2 cut(s) 3414, 4240
BalI TGGCCA 1 cut(s) 3354
BamHI GGATCC 2 cut(s) 913, 3693
BanI GGYRCC 2 cut(s) 2311, 3409
BanII GRGCYC 3 cut(s) 304, 2640, 3777
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BbsI GAAGAC 1 cut(s) 1250
Bbv12I GWGCWC 2 cut(s) 304, 3777
BbvCI CCTCAGC 1 cut(s) 751
BbvI GCAGC 6 cut(s) 166, 1957, 3196, 4071, 4105, 4303
BceAI ACGGC 3 cut(s) 487, 1519, 3380
BciT130I CCWGG 5 cut(s) 2484, 2760, 3405, 3573, 3935
BciVI GTATCC 2 cut(s) 2886, 3410
BclI TGATCA 2 cut(s) 232, 1537
BcnI CCSGG 6 cut(s) 600, 630, 849, 911, 1967, 4179
BcuI ACTAGT 2 cut(s) 532, 2594
BfmI CTRYAG 4 cut(s) 819, 1161, 3471, 4039
BfuAI ACCTGC 1 cut(s) 1192
BfuI GTATCC 2 cut(s) 2886, 3410
BglI GCCNNNNNGGC 1 cut(s) 1572
BisI GCNGC 9 cut(s) 180, 1971, 2371, 2987, 3207, 3210, 4085, 4119, 4317
BlnI CCTAGG 1 cut(s) 4075
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 9 cut(s) 181, 1972, 2372, 2988, 3208, 3211, 4086, 4120, 4318
Bme18I GGWCC 5 cut(s) 1181, 1382, 2153, 3931, 4181
BmgT120I GGNCC 7 cut(s) 623, 1181, 1382, 2153, 3912, 3931, 4181
BmiI GGNNCC 8 cut(s) 915, 1986, 2313, 2990, 3411, 3695, 3945, 4182
BmrI ACTGGG 1 cut(s) 956
BmsI GCATC 9 cut(s) 254, 576, 916, 941, 1273, 1621, 2551, 3187, 4071
BmtI GCTAGC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 956
BpiI GAAGAC 1 cut(s) 1250
BplI GAGNNNNNCTC 4 cut(s) 734, 766, 1457, 1489
BpmI CTGGAG 1 cut(s) 2708
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 2 cut(s) 85, 1789
BpuEI CTTGAG 7 cut(s) 82, 288, 671, 1885, 3355, 3413, 3945
BpuMI CCSGG 6 cut(s) 600, 630, 849, 911, 1967, 4179
Bsa29I ATCGAT 1 cut(s) 2108
BsaBI GATNNNNATC 3 cut(s) 566, 1566, 1590
BsaHI GRCGYC 1 cut(s) 4130
BsaJI CCNNGG 8 cut(s) 955, 2315, 2371, 2457, 3403, 3404, 3484, 4075
BsaWI WCCGGW 3 cut(s) 517, 2579, 2837
Bse118I RCCGGY 2 cut(s) 2579, 2837
Bse1I ACTGG 3 cut(s) 951, 2234, 3743
Bse21I CCTNAGG 2 cut(s) 2052, 2880
Bse3DI GCAATG 1 cut(s) 179
Bse8I GATNNNNATC 3 cut(s) 566, 1566, 1590
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 5 cut(s) 2484, 2760, 3405, 3573, 3935
BseCI ATCGAT 1 cut(s) 2108
BseDI CCNNGG 8 cut(s) 955, 2315, 2371, 2457, 3403, 3404, 3484, 4075
BseJI GATNNNNATC 3 cut(s) 566, 1566, 1590
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 8 cut(s) 20, 678, 765, 1611, 2043, 3011, 3102, 3726
BseNI ACTGG 3 cut(s) 951, 2234, 3743
BseRI GAGGAG 2 cut(s) 79, 1427
BseSI GKGCMC 2 cut(s) 3414, 4240
BseXI GCAGC 6 cut(s) 166, 1957, 3196, 4071, 4105, 4303
BsgI GTGCAG 2 cut(s) 1299, 4295
Bsh1236I CGCG 1 cut(s) 2373
BshFI GGCC 9 cut(s) 624, 765, 1022, 1083, 2758, 3354, 3521, 3914, 4362
BshNI GGYRCC 2 cut(s) 2311, 3409
BshTI ACCGGT 2 cut(s) 2579, 2837
BshVI ATCGAT 1 cut(s) 2108
BsiHKAI GWGCWC 2 cut(s) 304, 3777
BslFI GGGAC 5 cut(s) 283, 893, 1514, 3657, 4194
BsmBI CGTCTC 5 cut(s) 1316, 2535, 3000, 3573, 4295
BsmFI GGGAC 5 cut(s) 283, 893, 1514, 3657, 4194
BsmI GAATGC 2 cut(s) 2750, 4254
BsnI GGCC 9 cut(s) 624, 765, 1022, 1083, 2758, 3354, 3521, 3914, 4362
Bsp119I TTCGAA 2 cut(s) 85, 1789
Bsp1286I GDGCHC 5 cut(s) 304, 2640, 3414, 3777, 4240
Bsp13I TCCGGA 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 2662
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 8 cut(s) 182, 2071, 2371, 2373, 2790, 2986, 3206, 3601
BspANI GGCC 9 cut(s) 624, 765, 1022, 1083, 2758, 3354, 3521, 3914, 4362
BspCNI CTCAG 8 cut(s) 19, 677, 764, 1610, 2044, 3010, 3103, 3725
BspDI ATCGAT 1 cut(s) 2108
BspEI TCCGGA 1 cut(s) 517
BspFNI CGCG 1 cut(s) 2373
BspHI TCATGA 2 cut(s) 235, 3321
BspLI GGNNCC 8 cut(s) 915, 1986, 2313, 2990, 3411, 3695, 3945, 4182
BspMAI CTGCAG 2 cut(s) 823, 3475
BspMI ACCTGC 1 cut(s) 1192
BspOI GCTAGC 1 cut(s) 53
BspPI GGATC 9 cut(s) 218, 908, 921, 1109, 1599, 1807, 1957, 3688, 3701
BspQI GCTCTTC 1 cut(s) 3782
BspT104I TTCGAA 2 cut(s) 85, 1789
BspT107I GGYRCC 2 cut(s) 2311, 3409
BsrDI GCAATG 1 cut(s) 179
BsrFI RCCGGY 2 cut(s) 2579, 2837
BsrGI TGTACA 1 cut(s) 2662
BsrI ACTGG 3 cut(s) 951, 2234, 3743
BssAI RCCGGY 2 cut(s) 2579, 2837
BssECI CCNNGG 8 cut(s) 955, 2315, 2371, 2457, 3403, 3404, 3484, 4075
BssNI GRCGYC 1 cut(s) 4130
BssT1I CCWWGG 4 cut(s) 955, 2457, 3484, 4075
Bst2UI CCWGG 5 cut(s) 2484, 2760, 3405, 3573, 3935
Bst6I CTCTTC 4 cut(s) 1120, 3782, 3910, 4391
BstACI GRCGYC 1 cut(s) 4130
BstAUI TGTACA 1 cut(s) 2662
BstBI TTCGAA 2 cut(s) 85, 1789
BstC8I GCNNGC 9 cut(s) 51, 476, 823, 1020, 1314, 1684, 2797, 3555, 3637
BstDSI CCRYGG 1 cut(s) 2371
BstENI CCTNNNNNAGG 2 cut(s) 1463, 3938
BstFNI CGCG 1 cut(s) 2373
BstHHI GCGC 1 cut(s) 245
BstMWI GCNNNNNNNGC 9 cut(s) 11, 1572, 1967, 2230, 2719, 2796, 3206, 4127, 4258
BstNI CCWGG 5 cut(s) 2484, 2760, 3405, 3573, 3935
BstNSI RCATGY 2 cut(s) 1686, 4048
BstSFI CTRYAG 4 cut(s) 819, 1161, 3471, 4039
BstSLI GKGCMC 2 cut(s) 3414, 4240
BstUI CGCG 1 cut(s) 2373
BstV1I GCAGC 6 cut(s) 166, 1957, 3196, 4071, 4105, 4303
BstV2I GAAGAC 1 cut(s) 1250
BstX2I RGATCY 4 cut(s) 913, 1114, 1591, 3693
BstXI CCANNNNNNTGG 1 cut(s) 4200
BstYI RGATCY 4 cut(s) 913, 1114, 1591, 3693
Bsu15I ATCGAT 1 cut(s) 2108
Bsu36I CCTNAGG 2 cut(s) 2052, 2880
BsuI GTATCC 2 cut(s) 2886, 3410
BsuRI GGCC 9 cut(s) 624, 765, 1022, 1083, 2758, 3354, 3521, 3914, 4362
BsuTUI ATCGAT 1 cut(s) 2108
BtgI CCRYGG 1 cut(s) 2371
BtsI GCAGTG 1 cut(s) 3234
BtsIMutI CAGTG 8 cut(s) 414, 589, 792, 2875, 3108, 3234, 3731, 4238
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 9 cut(s) 51, 476, 823, 1020, 1314, 1684, 2797, 3555, 3637
CaiI CAGNNNCTG 2 cut(s) 3479, 3934
CciI TCATGA 2 cut(s) 235, 3321
CfoI GCGC 1 cut(s) 245
Cfr10I RCCGGY 2 cut(s) 2579, 2837
Cfr13I GGNCC 7 cut(s) 623, 1181, 1382, 2153, 3912, 3931, 4181
Cfr42I CCGCGG 1 cut(s) 2374
ClaI ATCGAT 1 cut(s) 2108
CseI GACGC 2 cut(s) 3345, 4119
Csp6I GTAC 7 cut(s) 941, 1047, 2518, 2663, 2844, 3736, 4055
CspAI ACCGGT 2 cut(s) 2579, 2837
CspCI CAANNNNNGTGG 4 cut(s) 1890, 1925, 3783, 3818
CviQI GTAC 7 cut(s) 941, 1047, 2518, 2663, 2844, 3736, 4055
DraI TTTAAA 2 cut(s) 1645, 1678
EaeI YGGCCR 1 cut(s) 3352
Eam1104I CTCTTC 4 cut(s) 1120, 3782, 3910, 4391
EarI CTCTTC 4 cut(s) 1120, 3782, 3910, 4391
EciI GGCGGA 1 cut(s) 2060
Ecl136II GAGCTC 2 cut(s) 302, 3775
Eco130I CCWWGG 4 cut(s) 955, 2457, 3484, 4075
Eco147I AGGCCT 1 cut(s) 4362
Eco24I GRGCYC 3 cut(s) 304, 2640, 3777
Eco32I GATATC 3 cut(s) 2112, 2406, 2907
Eco47I GGWCC 5 cut(s) 1181, 1382, 2153, 3931, 4181
Eco53kI GAGCTC 2 cut(s) 302, 3775
Eco57I CTGAAG 4 cut(s) 344, 1292, 1445, 2118
Eco81I CCTNAGG 2 cut(s) 2052, 2880
EcoICRI GAGCTC 2 cut(s) 302, 3775
EcoNI CCTNNNNNAGG 2 cut(s) 1463, 3938
EcoO109I RGGNCCY 1 cut(s) 3931
EcoRI GAATTC 2 cut(s) 496, 1717
EcoRII CCWGG 5 cut(s) 2482, 2758, 3403, 3571, 3933
EcoRV GATATC 3 cut(s) 2112, 2406, 2907
EcoT14I CCWWGG 4 cut(s) 955, 2457, 3484, 4075
EcoT22I ATGCAT 1 cut(s) 780
EcoT38I GRGCYC 3 cut(s) 304, 2640, 3777
ErhI CCWWGG 4 cut(s) 955, 2457, 3484, 4075
Esp3I CGTCTC 5 cut(s) 1316, 2535, 3000, 3573, 4295
FalI AAGNNNNNCTT 8 cut(s) 1705, 1737, 2690, 2722, 3468, 3500, 3954, 3986
FaqI GGGAC 5 cut(s) 283, 893, 1514, 3657, 4194
FauI CCCGC 1 cut(s) 3608
FauNDI CATATG 1 cut(s) 2275
FbaI TGATCA 2 cut(s) 232, 1537
Fnu4HI GCNGC 9 cut(s) 180, 1971, 2371, 2987, 3207, 3210, 4085, 4119, 4317
FriOI GRGCYC 3 cut(s) 304, 2640, 3777
Fsp4HI GCNGC 9 cut(s) 180, 1971, 2371, 2987, 3207, 3210, 4085, 4119, 4317
GlaI GCGC 1 cut(s) 244
GluI GCNGC 9 cut(s) 180, 1971, 2371, 2987, 3207, 3210, 4085, 4119, 4317
GsuI CTGGAG 1 cut(s) 2708
HaeIII GGCC 9 cut(s) 624, 765, 1022, 1083, 2758, 3354, 3521, 3914, 4362
HgaI GACGC 2 cut(s) 3345, 4119
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 4130
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HincII GTYRAC 3 cut(s) 1158, 2677, 3129
HindII GTYRAC 3 cut(s) 1158, 2677, 3129
HpaI GTTAAC 1 cut(s) 1158
HphI GGTGA 4 cut(s) 2446, 2594, 3555, 4337
Hpy188I TCNGA 5 cut(s) 107, 1600, 2737, 2769, 3000
HpyCH4IV ACGT 3 cut(s) 550, 1325, 3118
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 1572, 1967, 2230, 2719, 2796, 3206, 4127, 4258
HpySE526I ACGT 3 cut(s) 550, 1325, 3118
Hsp92I GRCGYC 1 cut(s) 4130
HspAI GCGC 1 cut(s) 243
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 2 cut(s) 232, 1537
KspAI GTTAAC 1 cut(s) 1158
KspI CCGCGG 1 cut(s) 2374
LguI GCTCTTC 1 cut(s) 3782
LmnI GCTCC 8 cut(s) 17, 66, 299, 2727, 2733, 2792, 2994, 3772
Lsp1109I GCAGC 6 cut(s) 166, 1957, 3196, 4071, 4105, 4303
LweI GCATC 9 cut(s) 254, 576, 916, 941, 1273, 1621, 2551, 3187, 4071
MaeII ACGT 3 cut(s) 550, 1325, 3118
MaeIII GTNAC 6 cut(s) 286, 707, 997, 2042, 2647, 3457
MfeI CAATTG 2 cut(s) 2847, 4122
MflI RGATCY 4 cut(s) 913, 1114, 1591, 3693
MhlI GDGCHC 5 cut(s) 304, 2640, 3414, 3777, 4240
MlsI TGGCCA 1 cut(s) 3354
MluNI TGGCCA 1 cut(s) 3354
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 3 cut(s) 1090, 1159, 2038
Mox20I TGGCCA 1 cut(s) 3354
Mph1103I ATGCAT 1 cut(s) 780
MroI TCCGGA 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 735, 1721
MscI TGGCCA 1 cut(s) 3354
MslI CAYNNNNRTG 4 cut(s) 1629, 2317, 2385, 3170
Msp20I TGGCCA 1 cut(s) 3354
MspA1I CMGCKG 5 cut(s) 364, 2168, 2373, 2790, 3716
MunI CAATTG 2 cut(s) 2847, 4122
Mva1269I GAATGC 2 cut(s) 2750, 4254
MvaI CCWGG 5 cut(s) 2484, 2760, 3405, 3573, 3935
MvnI CGCG 1 cut(s) 2373
MwoI GCNNNNNNNGC 9 cut(s) 11, 1572, 1967, 2230, 2719, 2796, 3206, 4127, 4258
NciI CCSGG 6 cut(s) 600, 630, 849, 911, 1967, 4179
NdeI CATATG 1 cut(s) 2275
NheI GCTAGC 1 cut(s) 49
NlaIV GGNNCC 8 cut(s) 915, 1986, 2313, 2990, 3411, 3695, 3945, 4182
NmuCI GTSAC 1 cut(s) 997
NsiI ATGCAT 1 cut(s) 780
NspI RCATGY 2 cut(s) 1686, 4048
NspV TTCGAA 2 cut(s) 85, 1789
OliI CACNNNNGTG 1 cut(s) 2317
PaeI GCATGC 1 cut(s) 1686
PagI TCATGA 2 cut(s) 235, 3321
PasI CCCWGGG 1 cut(s) 3404
PceI AGGCCT 1 cut(s) 4362
PciSI GCTCTTC 1 cut(s) 3782
PctI GAATGC 2 cut(s) 2750, 4254
PdmI GAANNNNTTC 2 cut(s) 735, 1721
PflMI CCANNNNNTGG 3 cut(s) 492, 3188, 3614
PfoI TCCNGGA 3 cut(s) 909, 2482, 4177
PinAI ACCGGT 2 cut(s) 2579, 2837
PkrI GCNGC 9 cut(s) 181, 1972, 2372, 2988, 3208, 3211, 4086, 4120, 4318
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PpuMI RGGWCCY 1 cut(s) 3931
PshBI ATTAAT 1 cut(s) 2777
Psp124BI GAGCTC 2 cut(s) 304, 3777
Psp5II RGGWCCY 1 cut(s) 3931
Psp6I CCWGG 5 cut(s) 2482, 2758, 3403, 3571, 3933
PspGI CCWGG 5 cut(s) 2482, 2758, 3403, 3571, 3933
PspN4I GGNNCC 8 cut(s) 915, 1986, 2313, 2990, 3411, 3695, 3945, 4182
PspPI GGNCC 7 cut(s) 623, 1181, 1382, 2153, 3912, 3931, 4181
PspPPI RGGWCCY 1 cut(s) 3931
PsrI GAACNNNNNNTAC 2 cut(s) 3021, 3053
PstI CTGCAG 2 cut(s) 823, 3475
PstNI CAGNNNCTG 2 cut(s) 3479, 3934
PsuI RGATCY 4 cut(s) 913, 1114, 1591, 3693
PvuII CAGCTG 3 cut(s) 364, 2168, 3716
RsaI GTAC 7 cut(s) 942, 1048, 2519, 2664, 2845, 3737, 4056
RsaNI GTAC 7 cut(s) 941, 1047, 2518, 2663, 2844, 3736, 4055
RseI CAYNNNNRTG 4 cut(s) 1629, 2317, 2385, 3170
SacI GAGCTC 2 cut(s) 304, 3777
SacII CCGCGG 1 cut(s) 2374
SapI GCTCTTC 1 cut(s) 3782
SatI GCNGC 9 cut(s) 180, 1971, 2371, 2987, 3207, 3210, 4085, 4119, 4317
Sau96I GGNCC 7 cut(s) 623, 1181, 1382, 2153, 3912, 3931, 4181
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 5 cut(s) 304, 2640, 3414, 3777, 4240
SfaNI GCATC 9 cut(s) 254, 576, 916, 941, 1273, 1621, 2551, 3187, 4071
SfcI CTRYAG 4 cut(s) 819, 1161, 3471, 4039
Sfr303I CCGCGG 1 cut(s) 2374
SfuI TTCGAA 2 cut(s) 85, 1789
SgrAI CRCCGGYG 1 cut(s) 2579
SgrBI CCGCGG 1 cut(s) 2374
SinI GGWCC 5 cut(s) 1181, 1382, 2153, 3931, 4181
SmiMI CAYNNNNRTG 4 cut(s) 1629, 2317, 2385, 3170
SmlI CTYRAG 7 cut(s) 97, 303, 686, 1900, 3370, 3392, 3960
SmoI CTYRAG 7 cut(s) 97, 303, 686, 1900, 3370, 3392, 3960
SpeI ACTAGT 2 cut(s) 532, 2594
SphI GCATGC 1 cut(s) 1686
SseBI AGGCCT 1 cut(s) 4362
SsiI CCGC 8 cut(s) 182, 2071, 2371, 2373, 2790, 2986, 3206, 3601
SspI AATATT 3 cut(s) 161, 2184, 2446
SstI GAGCTC 2 cut(s) 304, 3777
StuI AGGCCT 1 cut(s) 4362
StyI CCWWGG 4 cut(s) 955, 2457, 3484, 4075
TaiI ACGT 3 cut(s) 553, 1328, 3121
TaqI TCGA 6 cut(s) 85, 1608, 1789, 2108, 2385, 3880
TaqII GACCGA 1 cut(s) 2141
TatI WGTACW 4 cut(s) 1046, 2662, 3735, 4054
TauI GCSGC 3 cut(s) 2373, 2989, 3209
TscAI CASTG 8 cut(s) 421, 589, 799, 2875, 3115, 3234, 3738, 4245
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 6 cut(s) 179, 1970, 3209, 4084, 4118, 4316
Tsp45I GTSAC 1 cut(s) 997
TspGWI ACGGA 4 cut(s) 3706, 3875, 3880, 4260
TspRI CASTG 8 cut(s) 421, 589, 799, 2875, 3115, 3234, 3738, 4245
Van91I CCANNNNNTGG 3 cut(s) 492, 3188, 3614
VpaK11BI GGWCC 5 cut(s) 1181, 1382, 2153, 3931, 4181
VspI ATTAAT 1 cut(s) 2777
XagI CCTNNNNNAGG 2 cut(s) 1463, 3938
XbaI TCTAGA 1 cut(s) 1475
XceI RCATGY 2 cut(s) 1686, 4048
XcmI CCANNNNNNNNNTGG 2 cut(s) 652, 3615
XmaJI CCTAGG 1 cut(s) 4075
XmnI GAANNNNTTC 2 cut(s) 735, 1721
Zsp2I ATGCAT 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.