FvH4_4g24750

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000734
Physical Location & Seq
Reverse (-)
26774159 .. 26776185
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24750.t1

Sequence Viewer

Length: 1281 bp
ATGGAGTATTGTAATGTAGAGAGCGTCCAAGCCCTACTGAGTGCACCGCCTGATAAGGTCATGAGCATTAAGGGGCTGAGTACTGATGAATATATCCTTGAGAATATCATTTCGATGATCAAGAAACAGAAAGATGAGGAAGCGTTTTACTTGCTGGATTTAGGTGTTGTCATCGACCTCATCGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACGCTGTTAAGTGCAATCCACATCCGGATCTCCTTGCCACCTTGGTGGCTCATGGCTCCAGTTTCGACTGTGCAAGTCGGTCTGAAATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCGCATCATCTATGCAAATCCCTGTAAAGGTATCTCTCACATCAAGTACGCTGCCGAAGTTGGCGTGAACCTAACCACTTTTGAGTCACTGGATGAGATTGAGAAGATCCGGAAATTGCACACGAAATGTTCTTTACTAATCCGCATTAAAGCTCCGGACGAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTCCCTCAGCTCCTCCAAGCAGCTCAAACTGCAGGGCTCAAAGTTGCTGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCATACAAAATAGCCATAGAAGCAGCTAAGGCGGTTTTTCAGGAGGCAGATAGACTCTACATGCCTCCCATGTATGTGTTGAACATTGGCGGTGGCTTTGTGTCCGATGCACTGTGCTTTGAAGCTGCGGCAGCAGCGGTGAATGCTGCCGTAGACAAGTGTTTTTCTGAAGAGGGGCGACGCAACTTAACAGTGATCGCAGAGCCAGGTAGGTTCTTTGCAGAGACGGCTTTCACGCTTGTCACCAACATCATAGGGAAACGCGTGAGAGGGAAGGTCAGGCAATACTGGATCAACGAAGGGTTTTATGGCTCCATGATGCGTATAGACCGCACAAGCCTAGTTGAATCATGCATTTTTCTGAAATGCATATCCAATAACAGTAGCGAGAGTGAGAAGAACTCCACCCTGATGATATGTGGCAAAAGTAACGGTGGCGGTGCTCATACTTACAGTTCAACTGTGTTTGGTGCGACCTGTGATCCGATTGATAAAGTATTGGAGGATCACCAGCTACCAGAACTGGAGGTGAATGATTGGCTGGTGTTTCGAAACATGGGTGCTTATACTTCGTCGTGTAGCAACAACTTCAATGGTTTTGGCTCCACCAAGATCACCTACATCATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

427

Amino Acids

46.87

Weight (kDa)

5.84

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 57 - 290 2.9e-67 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 206 - 403 2.2e-15 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 507
AccI GTMKAC 1 cut(s) 801
AccII CGCG 1 cut(s) 912
AccIII TCCGGA 4 cut(s) 247, 340, 453, 499
AciI CCGC 8 cut(s) 47, 487, 680, 738, 776, 785, 979, 1086
AclWI GGATC 6 cut(s) 258, 351, 445, 947, 1124, 1161
AcoI YGGCCR 1 cut(s) 521
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 3 cut(s) 82, 392, 539
AfiI CCNNNNNNNGG 2 cut(s) 208, 371
AflIII ACRYGT 1 cut(s) 910
AgsI TTSAA 5 cut(s) 730, 770, 995, 1107, 1240
AjnI CCWGG 2 cut(s) 188, 853
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 6 cut(s) 497, 568, 581, 674, 773, 1162
AluI AGCT 6 cut(s) 497, 568, 581, 674, 773, 1162
Alw21I GWGCWC 3 cut(s) 46, 547, 1093
Alw26I GTCTC 1 cut(s) 866
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 6 cut(s) 258, 351, 445, 947, 1124, 1161
Aor13HI TCCGGA 4 cut(s) 247, 340, 453, 499
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 7 cut(s) 395, 578, 671, 773, 779, 782, 794
AspS9I GGNCC 1 cut(s) 211
AsuHPI GGTGA 5 cut(s) 799, 883, 1148, 1189, 1255
AsuII TTCGAA 1 cut(s) 1198
AvaII GGWCC 1 cut(s) 211
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 523
BanII GRGCYC 1 cut(s) 597
Bbv12I GWGCWC 3 cut(s) 46, 547, 1093
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 7 cut(s) 382, 590, 683, 760, 781, 791, 794
BccI CCATC 1 cut(s) 202
BceAI ACGGC 2 cut(s) 782, 891
BciT130I CCWGG 2 cut(s) 190, 855
BclI TGATCA 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 866
BfaI CTAG 1 cut(s) 989
BfmI CTRYAG 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 8 cut(s) 396, 579, 672, 774, 777, 780, 783, 795
BlsI GCNGC 8 cut(s) 397, 580, 673, 775, 778, 781, 784, 796
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 190, 855
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 3 cut(s) 280, 961, 1252
BmrFI CCNGG 2 cut(s) 190, 855
BmsI GCATC 3 cut(s) 357, 745, 957
BplI GAGNNNNNCTC 2 cut(s) 1034, 1066
BpmI CTGGAG 2 cut(s) 265, 1193
Bpu10I CCTNAGC 2 cut(s) 564, 675
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 2 cut(s) 119, 630
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 4 cut(s) 247, 340, 453, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 371
Bse1I ACTGG 4 cut(s) 282, 438, 941, 1176
BseAI TCCGGA 4 cut(s) 247, 340, 453, 499
BseBI CCWGG 2 cut(s) 190, 855
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 244, 442
BseLI CCNNNNNNNGG 2 cut(s) 208, 371
BseMII CTCAG 3 cut(s) 29, 68, 578
BseNI ACTGG 4 cut(s) 282, 438, 941, 1176
BseRI GAGGAG 1 cut(s) 560
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 7 cut(s) 382, 590, 683, 760, 781, 791, 794
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 912
BshFI GGCC 1 cut(s) 523
BsiHKAI GWGCWC 3 cut(s) 46, 547, 1093
BsiSI CCGG 4 cut(s) 248, 341, 454, 500
BslFI GGGAC 2 cut(s) 545, 619
BslI CCNNNNNNNGG 2 cut(s) 208, 371
BsmAI GTCTC 1 cut(s) 866
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 2 cut(s) 545, 619
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 1 cut(s) 523
Bsp119I TTCGAA 1 cut(s) 1198
Bsp1286I GDGCHC 4 cut(s) 46, 547, 597, 1093
Bsp13I TCCGGA 4 cut(s) 247, 340, 453, 499
Bsp143I GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
BspACI CCGC 8 cut(s) 47, 487, 680, 738, 776, 785, 979, 1086
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 3 cut(s) 30, 69, 577
BspEI TCCGGA 4 cut(s) 247, 340, 453, 499
BspFNI CGCG 1 cut(s) 912
BspHI TCATGA 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 280, 961, 1252
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 6 cut(s) 258, 351, 445, 947, 1124, 1161
BspQI GCTCTTC 1 cut(s) 552
BspT104I TTCGAA 1 cut(s) 1198
BsrI ACTGG 4 cut(s) 282, 438, 941, 1176
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 190, 855
Bst4CI ACNGT 8 cut(s) 293, 542, 762, 841, 1031, 1082, 1103, 1111
Bst6I CTCTTC 2 cut(s) 552, 813
BstBI TTCGAA 1 cut(s) 1198
BstDEI CTNAG 4 cut(s) 38, 77, 564, 675
BstF5I GGATG 2 cut(s) 244, 442
BstFNI CGCG 1 cut(s) 912
BstKTI GATC 9 cut(s) 120, 253, 346, 453, 846, 942, 1132, 1156, 1263
BstMAI GTCTC 1 cut(s) 866
BstMBI GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
BstMWI GCNNNNNNNGC 7 cut(s) 587, 668, 677, 779, 782, 791, 875
BstNI CCWGG 2 cut(s) 190, 855
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 2 cut(s) 188, 853
BstSFI CTRYAG 1 cut(s) 588
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 7 cut(s) 382, 590, 683, 760, 781, 791, 794
BstX2I RGATCY 2 cut(s) 250, 450
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 250, 450
BsuRI GGCC 1 cut(s) 523
BtsCI GGATG 2 cut(s) 244, 442
BtsIMutI CAGTG 3 cut(s) 431, 758, 846
BveI ACCTGC 1 cut(s) 507
CciI TCATGA 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 211
CseI GACGC 2 cut(s) 13, 837
Csp6I GTAC 3 cut(s) 81, 391, 538
CviAII CATG 7 cut(s) 61, 275, 709, 718, 964, 999, 1204
CviQI GTAC 3 cut(s) 81, 391, 538
DdeI CTNAG 4 cut(s) 38, 77, 564, 675
DpnI GATC 9 cut(s) 119, 252, 345, 452, 845, 941, 1131, 1155, 1262
DpnII GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 2 cut(s) 552, 813
EarI CTCTTC 2 cut(s) 552, 813
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 837
EcoRII CCWGG 2 cut(s) 188, 853
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 2 cut(s) 1004, 1019
EcoT38I GRGCYC 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 7 cut(s) 64, 278, 712, 721, 967, 1002, 1207
FaqI GGGAC 2 cut(s) 545, 619
FatI CATG 7 cut(s) 60, 274, 708, 717, 963, 998, 1203
FbaI TGATCA 1 cut(s) 117
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 8 cut(s) 396, 579, 672, 774, 777, 780, 783, 795
FokI GGATG 2 cut(s) 231, 449
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 8 cut(s) 396, 579, 672, 774, 777, 780, 783, 795
FspBI CTAG 1 cut(s) 989
GluI GCNGC 8 cut(s) 396, 579, 672, 774, 777, 780, 783, 795
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 265, 1193
HaeIII GGCC 1 cut(s) 523
HapII CCGG 4 cut(s) 248, 341, 454, 500
HgaI GACGC 2 cut(s) 13, 837
Hin1II CATG 7 cut(s) 64, 278, 712, 721, 967, 1002, 1207
HinfI GANTC 4 cut(s) 314, 428, 702, 995
HpaII CCGG 4 cut(s) 248, 341, 454, 500
HphI GGTGA 5 cut(s) 799, 883, 1148, 1189, 1255
Hpy166II GTNNAC 3 cut(s) 44, 412, 802
Hpy188I TCNGA 6 cut(s) 207, 307, 754, 817, 1011, 1134
Hpy188III TCNNGA 8 cut(s) 61, 121, 248, 341, 454, 500, 551, 689
Hpy8I GTNNAC 3 cut(s) 44, 412, 802
Hpy99I CGWCG 2 cut(s) 831, 1225
HpyAV CCTTC 4 cut(s) 212, 229, 916, 941
HpyCH4III ACNGT 8 cut(s) 293, 542, 762, 841, 1031, 1082, 1103, 1111
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 7 cut(s) 587, 668, 677, 779, 782, 791, 875
HpyF3I CTNAG 4 cut(s) 38, 77, 564, 675
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 7 cut(s) 64, 278, 712, 721, 967, 1002, 1207
Kpn2I TCCGGA 4 cut(s) 247, 340, 453, 499
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
LguI GCTCTTC 1 cut(s) 552
LmnI GCTCC 6 cut(s) 284, 502, 513, 573, 965, 1256
Lsp1109I GCAGC 7 cut(s) 382, 590, 683, 760, 781, 791, 794
LweI GCATC 3 cut(s) 357, 745, 957
MaeI CTAG 1 cut(s) 989
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 4 cut(s) 197, 429, 889, 1076
MalI GATC 9 cut(s) 119, 252, 345, 452, 845, 941, 1131, 1155, 1262
MboI GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
MboII GAAGA 5 cut(s) 460, 539, 566, 830, 1057
MflI RGATCY 2 cut(s) 250, 450
MhlI GDGCHC 4 cut(s) 46, 547, 597, 1093
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 3 cut(s) 309, 458, 640
MluI ACGCGT 1 cut(s) 910
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 3 cut(s) 323, 437, 696
MmeI TCCRAC 1 cut(s) 238
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 2 cut(s) 1004, 1019
MroI TCCGGA 4 cut(s) 247, 340, 453, 499
MscI TGGCCA 1 cut(s) 523
MseI TTAA 5 cut(s) 69, 231, 492, 836, 1275
MslI CAYNNNNRTG 4 cut(s) 113, 266, 722, 1058
Msp20I TGGCCA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 4 cut(s) 248, 341, 454, 500
MspR9I CCNGG 2 cut(s) 190, 855
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 2 cut(s) 190, 855
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 7 cut(s) 587, 668, 677, 779, 782, 791, 875
NdeII GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
NlaIII CATG 7 cut(s) 64, 278, 712, 721, 967, 1002, 1207
NlaIV GGNNCC 3 cut(s) 280, 961, 1252
NmuCI GTSAC 2 cut(s) 429, 889
NsiI ATGCAT 2 cut(s) 1004, 1019
NspI RCATGY 1 cut(s) 712
NspV TTCGAA 1 cut(s) 1198
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 995
PkrI GCNGC 8 cut(s) 397, 580, 673, 775, 778, 781, 784, 796
PleI GAGTC 3 cut(s) 322, 436, 696
PpsI GAGTC 3 cut(s) 322, 436, 696
Psp6I CCWGG 2 cut(s) 188, 853
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 2 cut(s) 188, 853
PspN4I GGNNCC 3 cut(s) 280, 961, 1252
PspPI GGNCC 1 cut(s) 211
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 2 cut(s) 250, 450
RsaI GTAC 3 cut(s) 82, 392, 539
RsaNI GTAC 3 cut(s) 81, 391, 538
RseI CAYNNNNRTG 4 cut(s) 113, 266, 722, 1058
SapI GCTCTTC 1 cut(s) 552
SaqAI TTAA 5 cut(s) 69, 231, 492, 836, 1275
SatI GCNGC 8 cut(s) 396, 579, 672, 774, 777, 780, 783, 795
Sau3AI GATC 9 cut(s) 117, 250, 343, 450, 843, 939, 1129, 1153, 1260
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 3 cut(s) 323, 437, 696
ScrFI CCNGG 2 cut(s) 190, 855
SduI GDGCHC 4 cut(s) 46, 547, 597, 1093
SfaNI GCATC 3 cut(s) 357, 745, 957
SfcI CTRYAG 1 cut(s) 588
SfuI TTCGAA 1 cut(s) 1198
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 4 cut(s) 113, 266, 722, 1058
SmlI CTYRAG 2 cut(s) 98, 645
SmoI CTYRAG 2 cut(s) 98, 645
Sse9I AATT 3 cut(s) 309, 458, 640
SsiI CCGC 8 cut(s) 47, 487, 680, 738, 776, 785, 979, 1086
SspMI CTAG 1 cut(s) 989
StyD4I CCNGG 2 cut(s) 188, 853
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 8 cut(s) 293, 542, 762, 841, 1031, 1082, 1103, 1111
TaiI ACGT 1 cut(s) 199
TaqI TCGA 5 cut(s) 113, 174, 183, 288, 1198
TaqII GACCGA 1 cut(s) 291
TasI AATT 3 cut(s) 309, 458, 640
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 779
TfiI GAWTC 1 cut(s) 995
Tru1I TTAA 5 cut(s) 69, 231, 492, 836, 1275
Tru9I TTAA 5 cut(s) 69, 231, 492, 836, 1275
TscAI CASTG 3 cut(s) 438, 765, 846
TseFI GTSAC 2 cut(s) 429, 889
TseI GCWGC 7 cut(s) 395, 578, 671, 773, 779, 782, 794
Tsp45I GTSAC 2 cut(s) 429, 889
TspDTI ATGAA 1 cut(s) 102
TspRI CASTG 3 cut(s) 438, 765, 846
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 1 cut(s) 211
XceI RCATGY 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 801
XspI CTAG 1 cut(s) 989
ZrmI AGTACT 1 cut(s) 82
Zsp2I ATGCAT 2 cut(s) 1004, 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.