RLG00000004654

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000734
Physical Location & Seq
Reverse (-)
61158683 .. 61159346
664 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004654

Sequence Viewer

Length: 594 bp
ATGGACTCACTTATACAAGAGGACCGTGCTTTCCCTGAAGAAGTGTCCCCGCTTCTCCAAGCCGCTCAAATTGCAAGACTCAAAGTTGTTGGGGTCGCTCAAACTGCAGGACTCAAAGTTGCTGAGGTGTCATTTCACATGTTGAGTAAGTCCCACAATTCTCAAGCATACAAAATAGCCATAGAGGCAGCTAAGGGGGTTTTTCTGGAGGGGGCCAGGCTTTGCATGCCTCGCATGCATGTGTTGAATAGTGGACGTGGCTTCTTGTCCGAACCATCTTTATTTGAAGCTGCGGCGTCAGCCGTGAAAATCGCTGTGGAGACGTATTTTTCAAAGGAAGAGCTAAGCAGCTTAACGGTGATAGCCAAGCCAGGTCGATTTTGTGCAGAGACCGCTTTCACTCTTTTCACCAACATTATAGGGAAGCACAAGAGAGGGAAGCTCAGAAAATACTGGATCCACGAAGGTGACGACATCGAGAAGAATCCAGTCTTGATGGTATGTGACAAAGGTACTGGTGGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCTGACGTCTGATCCTACTGACAAGGTGTTAGAGGTTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

198

Amino Acids

21.49

Weight (kDa)

7.73

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 30 - 129 1.6e-11 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 4 cut(s) 50, 63, 293, 393
AclWI GGATC 3 cut(s) 451, 464, 557
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 2 cut(s) 296, 557
AfaI GTAC 1 cut(s) 514
AflIII ACRYGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 247, 287, 333
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 2 cut(s) 215, 370
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 5 cut(s) 191, 290, 343, 351, 442
AluI AGCT 5 cut(s) 191, 290, 343, 351, 442
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 2 cut(s) 314, 383
AlwI GGATC 3 cut(s) 451, 464, 557
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 188, 290, 348
AspS9I GGNCC 2 cut(s) 22, 213
AsuHPI GGTGA 3 cut(s) 370, 400, 479
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 526
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 200, 277, 360
BccI CCATC 2 cut(s) 283, 490
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 2 cut(s) 217, 372
BcoDI GTCTC 2 cut(s) 314, 383
BfaI CTAG 1 cut(s) 592
BfmI CTRYAG 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 185
BisI GCNGC 5 cut(s) 63, 189, 291, 294, 349
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 5 cut(s) 64, 190, 292, 295, 350
Bme1390I CCNGG 2 cut(s) 217, 372
Bme18I GGWCC 1 cut(s) 22
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 22, 213
BmiI GGNNCC 2 cut(s) 214, 458
BmrFI CCNGG 2 cut(s) 217, 372
BplI GAGNNNNNCTC 2 cut(s) 426, 458
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 2 cut(s) 123, 192
Bpu1102I GCTNAGC 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 147
BsaHI GRCGYC 2 cut(s) 296, 557
BsaI GGTCTC 1 cut(s) 383
Bse1I ACTGG 3 cut(s) 458, 488, 520
BseBI CCWGG 2 cut(s) 217, 372
BseMII CTCAG 2 cut(s) 114, 457
BseNI ACTGG 3 cut(s) 458, 488, 520
BseXI GCAGC 3 cut(s) 200, 277, 360
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 526
BslFI GGGAC 2 cut(s) 31, 136
BsmAI GTCTC 2 cut(s) 314, 383
BsmBI CGTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 31, 136
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 526
Bsp143I GATC 2 cut(s) 456, 562
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 4 cut(s) 50, 63, 293, 393
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 115, 456
BspLI GGNNCC 2 cut(s) 214, 458
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 3 cut(s) 451, 464, 557
BspQI GCTCTTC 1 cut(s) 333
BspTNI GGTCTC 1 cut(s) 383
BsrBI CCGCTC 1 cut(s) 65
BsrI ACTGG 3 cut(s) 458, 488, 520
BssMI GATC 2 cut(s) 456, 562
BssNI GRCGYC 2 cut(s) 296, 557
Bst2UI CCWGG 2 cut(s) 217, 372
Bst4CI ACNGT 4 cut(s) 26, 358, 536, 544
Bst6I CTCTTC 1 cut(s) 333
BstACI GRCGYC 2 cut(s) 296, 557
BstC8I GCNNGC 3 cut(s) 227, 236, 526
BstDEI CTNAG 4 cut(s) 123, 192, 344, 443
BstKTI GATC 2 cut(s) 459, 565
BstMAI GTCTC 2 cut(s) 314, 383
BstMBI GATC 2 cut(s) 456, 562
BstMWI GCNNNNNNNGC 8 cut(s) 71, 104, 185, 226, 231, 235, 299, 392
BstNI CCWGG 2 cut(s) 217, 372
BstNSI RCATGY 4 cut(s) 142, 229, 238, 242
BstSCI CCNGG 2 cut(s) 215, 370
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 200, 277, 360
BstX2I RGATCY 1 cut(s) 456
BstYI RGATCY 1 cut(s) 456
BsuRI GGCC 1 cut(s) 215
BtrI CACGTC 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 227, 236, 526
Cfr13I GGNCC 2 cut(s) 22, 213
CseI GACGC 1 cut(s) 285
Csp6I GTAC 1 cut(s) 513
CviAII CATG 4 cut(s) 139, 226, 235, 239
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 4 cut(s) 123, 192, 344, 443
DpnI GATC 2 cut(s) 458, 564
DpnII GATC 2 cut(s) 456, 562
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 22
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 2 cut(s) 215, 370
EcoT22I ATGCAT 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 314
FaeI CATG 4 cut(s) 142, 229, 238, 242
FaiI YATR 9 cut(s) 14, 140, 169, 182, 227, 236, 240, 419, 502
FaqI GGGAC 2 cut(s) 31, 136
FatI CATG 4 cut(s) 138, 225, 234, 238
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 63, 189, 291, 294, 349
Fsp4HI GCNGC 5 cut(s) 63, 189, 291, 294, 349
FspBI CTAG 1 cut(s) 592
GluI GCNGC 5 cut(s) 63, 189, 291, 294, 349
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 215
HgaI GACGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 296, 557
Hin1II CATG 4 cut(s) 142, 229, 238, 242
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 4 cut(s) 5, 78, 111, 484
HphI GGTGA 3 cut(s) 370, 400, 479
Hpy166II GTNNAC 2 cut(s) 254, 589
Hpy188I TCNGA 4 cut(s) 271, 446, 555, 562
Hpy188III TCNNGA 3 cut(s) 206, 478, 493
Hpy8I GTNNAC 2 cut(s) 254, 589
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 4 cut(s) 26, 358, 536, 544
HpyCH4IV ACGT 3 cut(s) 256, 323, 557
HpyCH4V TGCA 5 cut(s) 74, 107, 225, 238, 386
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 104, 185, 226, 231, 235, 299, 392
HpyF3I CTNAG 4 cut(s) 123, 192, 344, 443
HpySE526I ACGT 3 cut(s) 256, 323, 557
Hsp92I GRCGYC 2 cut(s) 296, 557
Hsp92II CATG 4 cut(s) 142, 229, 238, 242
Kzo9I GATC 2 cut(s) 456, 562
LguI GCTCTTC 1 cut(s) 333
Lsp1109I GCAGC 3 cut(s) 200, 277, 360
MaeI CTAG 1 cut(s) 592
MaeII ACGT 3 cut(s) 256, 323, 557
MaeIII GTNAC 2 cut(s) 467, 503
MalI GATC 2 cut(s) 458, 564
MbiI CCGCTC 1 cut(s) 65
MboI GATC 2 cut(s) 456, 562
MboII GAAGA 3 cut(s) 50, 350, 493
MflI RGATCY 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 2 cut(s) 69, 157
MlyI GAGTC 2 cut(s) 72, 105
MnlI CCTC 7 cut(s) 13, 118, 178, 202, 240, 428, 577
Mph1103I ATGCAT 1 cut(s) 240
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 239, 465
MspR9I CCNGG 2 cut(s) 217, 372
MvaI CCWGG 2 cut(s) 217, 372
MwoI GCNNNNNNNGC 8 cut(s) 71, 104, 185, 226, 231, 235, 299, 392
NdeII GATC 2 cut(s) 456, 562
NlaIII CATG 4 cut(s) 142, 229, 238, 242
NlaIV GGNNCC 2 cut(s) 214, 458
NmuCI GTSAC 2 cut(s) 467, 503
NsiI ATGCAT 1 cut(s) 240
NspI RCATGY 4 cut(s) 142, 229, 238, 242
OliI CACNNNNGTG 1 cut(s) 465
PaeI GCATGC 2 cut(s) 229, 238
PciI ACATGT 1 cut(s) 138
PciSI GCTCTTC 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfeI GAWTC 1 cut(s) 484
PkrI GCNGC 5 cut(s) 64, 190, 292, 295, 350
PleI GAGTC 2 cut(s) 72, 105
PpsI GAGTC 2 cut(s) 72, 105
PscI ACATGT 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 215, 370
PspGI CCWGG 2 cut(s) 215, 370
PspN4I GGNNCC 2 cut(s) 214, 458
PspPI GGNCC 2 cut(s) 22, 213
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 456
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
RseI CAYNNNNRTG 2 cut(s) 239, 465
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 353
SatI GCNGC 5 cut(s) 63, 189, 291, 294, 349
Sau3AI GATC 2 cut(s) 456, 562
Sau96I GGNCC 2 cut(s) 22, 213
SchI GAGTC 2 cut(s) 72, 105
ScrFI CCNGG 2 cut(s) 217, 372
SduI GDGCHC 1 cut(s) 526
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 22
SmiMI CAYNNNNRTG 2 cut(s) 239, 465
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
SphI GCATGC 2 cut(s) 229, 238
Sse9I AATT 2 cut(s) 69, 157
SsiI CCGC 4 cut(s) 50, 63, 293, 393
SspMI CTAG 1 cut(s) 592
StyD4I CCNGG 2 cut(s) 215, 370
TaaI ACNGT 4 cut(s) 26, 358, 536, 544
TaiI ACGT 3 cut(s) 259, 326, 560
TaqI TCGA 3 cut(s) 376, 477, 539
TasI AATT 2 cut(s) 69, 157
TauI GCSGC 2 cut(s) 65, 296
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TseFI GTSAC 2 cut(s) 467, 503
TseI GCWGC 3 cut(s) 188, 290, 348
Tsp45I GTSAC 2 cut(s) 467, 503
VpaK11BI GGWCC 1 cut(s) 22
XceI RCATGY 4 cut(s) 142, 229, 238, 242
XspI CTAG 1 cut(s) 592
ZraI GACGTC 1 cut(s) 558
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.