Prupe.8G048200_v2.0.a1

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000734
Physical Location & Seq
Forward (+)
5232436 .. 5233973
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G048200.1

Sequence Viewer

Length: 1065 bp
ATGGAAAAATGGAGCCATTGCCTTCCCAATGTTCAGCTCTTCTTTGCTGTCAAGTGTAACCATGAGCCTGCATTCATTGCTGCATTGGCAACACTTGGTGCAAGCTTTGATTGTGCCAGCAAGGCCGAGATTGAGGCCGTCTTTGCTCATGGTGTAAGCCCCACGAGAATTGTTTATGCCAATCCATGCAAGGGTGAGTACCATTTAAGGTACGCAGCTGGAGTCGGGGTCGATCTTGCGACCTTCGACTCCATGGACGAAGTTGATAAGATCAAAAGGTGCCACCCCAAATGTTCCTTGTTGCTTCGGATTGCTGTACCAAATGACAAGAGCTCGTGGCGTTCATTCGGGACCAAATTTGGTGCGTTGCCTGAAGAGGTCGCATCACTCCTCAGACACGCACACAAACTAGGGTTAAGAGTGGTGGGAATTTCATTCCATATGGGATCGAAAGCGTCTGAATCTCAAGTGTACTGTAGAGCAATAGCTGCAGCTAGAGCTGCATTTGATGTGGCTGATGAGCTCAAAATGCCCAAAATGCATGTGCTTGATATTGGTGGTGGGTTCAAAGCAAATCAACTGTTTGATGAAATAGCCAAGACCATAAATGTTGCCATCAAACACTACTTTTCTGATCATCAGTCAGATTCTGATCTGAAGGTGATGGCTGAGCCAGGAAGGTTCTTTGCTGAAACTGCATTCACAATGGTTGCAAATGTGATGGGGAAGAGAGTGAGGGGAGAGAAAAGAGAGTATTGGATTAGTGATGGAATTTATGGGTCATTTAATCTTCCAGCATACGACAAATCCTCTATGCAAATCTCACCGCTCCAAATTCTAAGTCCTCACCAAAATCAAGGGACATATTCATCAACAGGTTTTGGGCCGACTTGTGATTCATTGGACACAGTTGTTGCTGACTGCAAACTGCCTGAATTAAAGCTGAATGATTATCTTGTGTTCCACAATATGGGCGCCTACACAACTTCTGCTGGAACCAACTTCAACGGCTTCTGCATTTCTGCTATTCCCACGTACCTGGCATTTACAAGTGCTAATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

355

Amino Acids

38.75

Weight (kDa)

7.18

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 279, 974
AccB7I CCANNNNNTGG 1 cut(s) 970
AccBSI CCGCTC 1 cut(s) 829
AciI CCGC 1 cut(s) 827
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 4 cut(s) 356, 429, 771, 834
AcuI CTGAAG 2 cut(s) 393, 677
AcyI GRCGYC 1 cut(s) 975
AdeI CACNNNGTG 1 cut(s) 98
AfaI GTAC 5 cut(s) 200, 212, 318, 473, 1037
AfiI CCNNNNNNNGG 2 cut(s) 191, 970
AgsI TTSAA 2 cut(s) 568, 1006
AjnI CCWGG 2 cut(s) 673, 1038
AluBI AGCT 9 cut(s) 37, 105, 218, 333, 488, 494, 500, 523, 943
AluI AGCT 9 cut(s) 37, 105, 218, 333, 488, 494, 500, 523, 943
Alw21I GWGCWC 2 cut(s) 335, 525
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 3 cut(s) 123, 135, 884
ApeKI GCWGC 5 cut(s) 80, 215, 488, 491, 500
ApoI RAATTY 4 cut(s) 356, 429, 771, 834
ArsI GACNNNNNNTTYG 2 cut(s) 826, 858
AspLEI GCGC 1 cut(s) 977
AspS9I GGNCC 2 cut(s) 351, 884
AsuHPI GGTGA 4 cut(s) 206, 673, 816, 839
AvaII GGWCC 1 cut(s) 351
BanI GGYRCC 2 cut(s) 279, 974
BanII GRGCYC 2 cut(s) 335, 525
BauI CACGAG 2 cut(s) 163, 334
Bbv12I GWGCWC 2 cut(s) 335, 525
BbvI GCAGC 5 cut(s) 67, 227, 475, 487, 503
BccI CCATC 4 cut(s) 623, 658, 715, 761
BceAI ACGGC 2 cut(s) 122, 1024
BciT130I CCWGG 2 cut(s) 675, 1040
BclI TGATCA 1 cut(s) 634
BfaI CTAG 2 cut(s) 410, 495
BfmI CTRYAG 2 cut(s) 475, 489
BfoI RGCGCY 1 cut(s) 978
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 5 cut(s) 81, 216, 489, 492, 501
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 5 cut(s) 82, 217, 490, 493, 502
Bme1390I CCNGG 2 cut(s) 675, 1040
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 2 cut(s) 351, 884
BmiI GGNNCC 5 cut(s) 14, 281, 352, 976, 997
BmrFI CCNGG 2 cut(s) 675, 1040
BmsI GCATC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 240
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 450
BsaAI YACGTR 1 cut(s) 1035
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 1 cut(s) 975
BsaJI CCNNGG 1 cut(s) 252
BsaXI ACNNNNNCTCC 2 cut(s) 213, 243
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 970
Bse3DI GCAATG 2 cut(s) 16, 75
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 2 cut(s) 675, 1040
BseDI CCNNGG 1 cut(s) 252
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 2 cut(s) 191, 970
BseMI GCAATG 2 cut(s) 16, 75
BseMII CTCAG 2 cut(s) 406, 660
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 5 cut(s) 67, 227, 475, 487, 503
BshFI GGCC 3 cut(s) 125, 137, 886
BshNI GGYRCC 2 cut(s) 279, 974
BsiHKAI GWGCWC 2 cut(s) 335, 525
BslFI GGGAC 2 cut(s) 364, 874
BslI CCNNNNNNNGG 2 cut(s) 191, 970
BsmFI GGGAC 2 cut(s) 364, 874
BsmI GAATGC 2 cut(s) 71, 698
BsnI GGCC 3 cut(s) 125, 137, 886
Bsp1286I GDGCHC 2 cut(s) 335, 525
Bsp143I GATC 5 cut(s) 232, 270, 446, 634, 652
Bsp1720I GCTNAGC 1 cut(s) 669
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 1 cut(s) 827
BspANI GGCC 3 cut(s) 125, 137, 886
BspCNI CTCAG 2 cut(s) 405, 661
BspLI GGNNCC 5 cut(s) 14, 281, 352, 976, 997
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 44
BspT107I GGYRCC 2 cut(s) 279, 974
BsrBI CCGCTC 1 cut(s) 829
BsrDI GCAATG 2 cut(s) 16, 75
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 5 cut(s) 232, 270, 446, 634, 652
BssNI GRCGYC 1 cut(s) 975
BssSI CACGAG 2 cut(s) 163, 334
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 2 cut(s) 163, 334
Bst2UI CCWGG 2 cut(s) 675, 1040
Bst4CI ACNGT 3 cut(s) 476, 582, 910
Bst6I CTCTTC 3 cut(s) 44, 369, 722
BstACI GRCGYC 1 cut(s) 975
BstAPI GCANNNNNTGC 2 cut(s) 77, 488
BstBAI YACGTR 1 cut(s) 1035
BstC8I GCNNGC 3 cut(s) 69, 103, 118
BstDEI CTNAG 3 cut(s) 392, 669, 839
BstDSI CCRYGG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 978
BstHHI GCGC 1 cut(s) 977
BstKTI GATC 5 cut(s) 235, 273, 449, 637, 655
BstMBI GATC 5 cut(s) 232, 270, 446, 634, 652
BstNI CCWGG 2 cut(s) 675, 1040
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 673, 1038
BstSFI CTRYAG 2 cut(s) 475, 489
BstV1I GCAGC 5 cut(s) 67, 227, 475, 487, 503
BstXI CCANNNNNNTGG 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 125, 137, 886
BtgI CCRYGG 1 cut(s) 252
Cac8I GCNNGC 3 cut(s) 69, 103, 118
CaiI CAGNNNCTG 1 cut(s) 650
CfoI GCGC 1 cut(s) 977
Cfr13I GGNCC 2 cut(s) 351, 884
CseI GACGC 1 cut(s) 444
Csp6I GTAC 5 cut(s) 199, 211, 317, 472, 1036
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviAII CATG 5 cut(s) 62, 149, 186, 253, 542
CviQI GTAC 5 cut(s) 199, 211, 317, 472, 1036
DdeI CTNAG 3 cut(s) 392, 669, 839
DinI GGCGCC 1 cut(s) 976
DpnI GATC 5 cut(s) 234, 272, 448, 636, 654
DpnII GATC 5 cut(s) 232, 270, 446, 634, 652
DraIII CACNNNGTG 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 44, 369, 722
EarI CTCTTC 3 cut(s) 44, 369, 722
Ecl136II GAGCTC 2 cut(s) 333, 523
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 2 cut(s) 335, 525
Eco47I GGWCC 1 cut(s) 351
Eco53kI GAGCTC 2 cut(s) 333, 523
Eco57I CTGAAG 2 cut(s) 393, 677
EcoICRI GAGCTC 2 cut(s) 333, 523
EcoRII CCWGG 2 cut(s) 673, 1038
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 543
EcoT38I GRGCYC 2 cut(s) 335, 525
EgeI GGCGCC 1 cut(s) 976
EheI GGCGCC 1 cut(s) 976
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 5 cut(s) 65, 152, 189, 256, 545
FaqI GGGAC 2 cut(s) 364, 874
FatI CATG 5 cut(s) 61, 148, 185, 252, 541
FauNDI CATATG 1 cut(s) 441
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 5 cut(s) 81, 216, 489, 492, 501
FriOI GRGCYC 2 cut(s) 335, 525
Fsp4HI GCNGC 5 cut(s) 81, 216, 489, 492, 501
FspBI CTAG 2 cut(s) 410, 495
GlaI GCGC 1 cut(s) 976
GluI GCNGC 5 cut(s) 81, 216, 489, 492, 501
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 978
HaeIII GGCC 3 cut(s) 125, 137, 886
HgaI GACGC 1 cut(s) 444
HhaI GCGC 1 cut(s) 977
Hin1I GRCGYC 1 cut(s) 975
Hin1II CATG 5 cut(s) 65, 152, 189, 256, 545
Hin6I GCGC 1 cut(s) 975
HinP1I GCGC 1 cut(s) 975
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 5 cut(s) 222, 248, 461, 647, 896
HphI GGTGA 4 cut(s) 206, 673, 816, 839
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 7 cut(s) 309, 395, 460, 634, 646, 652, 657
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 1 cut(s) 472
HpyAV CCTTC 4 cut(s) 32, 253, 652, 672
HpyCH4III ACNGT 3 cut(s) 476, 582, 910
HpyCH4IV ACGT 1 cut(s) 1034
HpyF3I CTNAG 3 cut(s) 392, 669, 839
HpySE526I ACGT 1 cut(s) 1034
Hsp92I GRCGYC 1 cut(s) 975
Hsp92II CATG 5 cut(s) 65, 152, 189, 256, 545
HspAI GCGC 1 cut(s) 975
KasI GGCGCC 1 cut(s) 974
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 5 cut(s) 232, 270, 446, 634, 652
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 12, 834
Lsp1109I GCAGC 5 cut(s) 67, 227, 475, 487, 503
LweI GCATC 1 cut(s) 392
MaeI CTAG 2 cut(s) 410, 495
MaeII ACGT 1 cut(s) 1034
MaeIII GTNAC 1 cut(s) 56
MalI GATC 5 cut(s) 234, 272, 448, 636, 654
MbiI CCGCTC 1 cut(s) 829
MboI GATC 5 cut(s) 232, 270, 446, 634, 652
MboII GAAGA 4 cut(s) 31, 386, 739, 782
MhlI GDGCHC 2 cut(s) 335, 525
MluCI AATT 6 cut(s) 168, 356, 429, 771, 834, 935
Mly113I GGCGCC 1 cut(s) 975
MlyI GAGTC 2 cut(s) 231, 242
MnlI CCTC 6 cut(s) 127, 370, 401, 729, 820, 855
Mph1103I ATGCAT 1 cut(s) 543
MseI TTAA 5 cut(s) 206, 416, 786, 938, 1063
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 675, 1040
Mva1269I GAATGC 2 cut(s) 71, 698
MvaI CCWGG 2 cut(s) 675, 1040
NarI GGCGCC 1 cut(s) 975
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 441
NdeII GATC 5 cut(s) 232, 270, 446, 634, 652
NlaIII CATG 5 cut(s) 65, 152, 189, 256, 545
NlaIV GGNNCC 5 cut(s) 14, 281, 352, 976, 997
NmeAIII GCCGAG 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 543
NspI RCATGY 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 44
PctI GAATGC 2 cut(s) 71, 698
PfeI GAWTC 3 cut(s) 461, 647, 896
PflMI CCANNNNNTGG 1 cut(s) 970
PkrI GCNGC 5 cut(s) 82, 217, 490, 493, 502
PleI GAGTC 2 cut(s) 230, 242
PluTI GGCGCC 1 cut(s) 978
PpsI GAGTC 2 cut(s) 230, 242
Ppu21I YACGTR 1 cut(s) 1035
Psp124BI GAGCTC 2 cut(s) 335, 525
Psp6I CCWGG 2 cut(s) 673, 1038
PspGI CCWGG 2 cut(s) 673, 1038
PspN4I GGNNCC 5 cut(s) 14, 281, 352, 976, 997
PspPI GGNCC 2 cut(s) 351, 884
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 650
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 5 cut(s) 200, 212, 318, 473, 1037
RsaNI GTAC 5 cut(s) 199, 211, 317, 472, 1036
SacI GAGCTC 2 cut(s) 335, 525
SapI GCTCTTC 1 cut(s) 44
SaqAI TTAA 5 cut(s) 206, 416, 786, 938, 1063
SatI GCNGC 5 cut(s) 81, 216, 489, 492, 501
Sau3AI GATC 5 cut(s) 232, 270, 446, 634, 652
Sau96I GGNCC 2 cut(s) 351, 884
SchI GAGTC 2 cut(s) 231, 242
ScrFI CCNGG 2 cut(s) 675, 1040
SduI GDGCHC 2 cut(s) 335, 525
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 2 cut(s) 475, 489
SfoI GGCGCC 1 cut(s) 976
SinI GGWCC 1 cut(s) 351
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 6 cut(s) 168, 356, 429, 771, 834, 935
SsiI CCGC 1 cut(s) 827
SspDI GGCGCC 1 cut(s) 974
SspMI CTAG 2 cut(s) 410, 495
SstI GAGCTC 2 cut(s) 335, 525
StyD4I CCNGG 2 cut(s) 673, 1038
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 476, 582, 910
TaiI ACGT 1 cut(s) 1037
TaqI TCGA 3 cut(s) 231, 246, 449
TasI AATT 6 cut(s) 168, 356, 429, 771, 834, 935
TatI WGTACW 1 cut(s) 471
TfiI GAWTC 3 cut(s) 461, 647, 896
Tru1I TTAA 5 cut(s) 206, 416, 786, 938, 1063
Tru9I TTAA 5 cut(s) 206, 416, 786, 938, 1063
TseI GCWGC 5 cut(s) 80, 215, 488, 491, 500
TspDTI ATGAA 6 cut(s) 64, 333, 423, 603, 858, 888
Van91I CCANNNNNTGG 1 cut(s) 970
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 4 cut(s) 356, 429, 771, 834
XceI RCATGY 1 cut(s) 545
XspI CTAG 2 cut(s) 410, 495
Zsp2I ATGCAT 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.