Rh7BG375500

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000734
Physical Location & Seq
Forward (+)
40412521 .. 40414295
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG375500.1

Sequence Viewer

Length: 1263 bp
ATGGAGTCCTTGCCTGAAGCTCTACCAAGTGCACCGGATCAGTTTGTGAGCAACAACGGGCTGAGTACTGATGAATATTTCCTTGAGAAAATTATTTCGACGATCAAGAAGCAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTTTACGCTGTTAAATGCAATCCACACCCGGATCTCCTGGCCAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCTGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCGCATAATCTATGCAAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCCAAAGTTGGCGTTAACCTAATGACTTTCGACTCGGTATATGAGGTTGAAAAGATACAAAAATGTCACCCCAAATGTTCTTTACTTATCCGCATCAAAGCTCCGGACGAAAGTGGGTGCATGTGGACAACGAGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCCCCGCTTCTCCAAGCCGCTCAAACTGTAGGACTCAAAGTTGCTGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCGTACAGAACAGCTATAGAGGCAGCTAAGTCGGTTTTTCAGGAGGCGGCCAGGCTCTGCATGGCTCCCATGTATGTGTTGAACATTGGCGGTGGCTTCGTGTCTGAGCCATCCTTCTTTGAAGCTGCGGCGTCAGCCGTGAAAACCGCTGTGGAGACGTATTTTTCAGAGGAAGAGCGACGCAGCTTAATAGTGATAGCTGAGCCAGGTCGGTTTTTTGCAGAAACAGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGAGAGGTCAGACAATACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCGTGCGGACCCTAGAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAATAGTGATGGCAACGAGAAGAATCCAGTCTTGATGGTATGTGGCAAAGTTACTGGTGGTGCTCGCACTTATATTTCGACTGTGTTTGGTCCGACGTGTGATCCGGTTGACAAGGTGTTGGGGGGTGACCAGCTACCAGAACTTGAGGTGAATGGTTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCGGCGTGTAGCAACAACTTTAATGGTTTTGGCTCAAGCAAGATCACCTACCTTACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

420

Amino Acids

45.94

Weight (kDa)

5.55

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 397 4e-12 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 52 - 285 1.7e-69 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 566
AccIII TCCGGA 2 cut(s) 325, 484
AciI CCGC 8 cut(s) 472, 551, 564, 680, 723, 761, 780, 959
AclWI GGATC 5 cut(s) 45, 243, 336, 932, 1106
AcoI YGGCCR 2 cut(s) 243, 681
AcuI CTGAAG 2 cut(s) 36, 558
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 3 cut(s) 67, 377, 638
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 1106
AgsI TTSAA 4 cut(s) 431, 715, 755, 980
AjiI CACGTC 1 cut(s) 1107
AjnI CCWGG 4 cut(s) 173, 240, 683, 838
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
Alw21I GWGCWC 3 cut(s) 34, 532, 1075
Alw26I GTCTC 1 cut(s) 782
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 5 cut(s) 45, 243, 336, 932, 1106
AlwNI CAGNNNCTG 1 cut(s) 690
Aor13HI TCCGGA 2 cut(s) 325, 484
AoxI GGCC 2 cut(s) 243, 681
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 5 cut(s) 112, 380, 656, 758, 816
AspS9I GGNCC 4 cut(s) 196, 945, 961, 1100
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 5 cut(s) 440, 868, 1148, 1171, 1237
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 4 cut(s) 196, 945, 961, 1100
BaeGI GKGCMC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 245
Bbv12I GWGCWC 3 cut(s) 34, 532, 1075
BbvI GCAGC 5 cut(s) 124, 367, 668, 745, 828
BccI CCATC 4 cut(s) 187, 751, 1013, 1039
BceAI ACGGC 1 cut(s) 755
BcgI CGANNNNNNTGC 2 cut(s) 645, 679
BciT130I CCWGG 4 cut(s) 175, 242, 685, 840
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 2 cut(s) 360, 966
BfmI CTRYAG 2 cut(s) 573, 648
BisI GCNGC 8 cut(s) 113, 381, 564, 657, 681, 759, 762, 817
BlpI GCTNAGC 1 cut(s) 834
BlsI GCNGC 8 cut(s) 114, 382, 565, 658, 682, 760, 763, 818
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 5 cut(s) 175, 233, 242, 685, 840
Bme18I GGWCC 4 cut(s) 196, 945, 961, 1100
BmgBI CACGTC 1 cut(s) 1107
BmgT120I GGNCC 4 cut(s) 196, 945, 961, 1100
BmiI GGNNCC 3 cut(s) 699, 946, 963
BmrFI CCNGG 5 cut(s) 175, 233, 242, 685, 840
BmsI GCATC 2 cut(s) 483, 942
BmtI GCTAGC 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 834
BpuEI CTTGAG 5 cut(s) 104, 250, 615, 1175, 1219
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 764
BsaWI WCCGGW 4 cut(s) 34, 325, 484, 1114
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 926, 1037, 1069
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 2 cut(s) 325, 484
BseBI CCWGG 4 cut(s) 175, 242, 685, 840
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 4 cut(s) 53, 282, 729, 825
BseNI ACTGG 3 cut(s) 926, 1037, 1069
BseRI GAGGAG 1 cut(s) 918
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 5 cut(s) 124, 367, 668, 745, 828
BseYI CCCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 245, 683
BsiHKAI GWGCWC 3 cut(s) 34, 532, 1075
BsiSI CCGG 5 cut(s) 35, 233, 326, 485, 1115
BslFI GGGAC 2 cut(s) 532, 604
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 782
BsmBI CGTCTC 1 cut(s) 782
BsmFI GGGAC 2 cut(s) 532, 604
BsnI GGCC 2 cut(s) 245, 683
Bsp1286I GDGCHC 3 cut(s) 34, 532, 1075
Bsp13I TCCGGA 2 cut(s) 325, 484
Bsp143I GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
Bsp1720I GCTNAGC 1 cut(s) 834
BspACI CCGC 8 cut(s) 472, 551, 564, 680, 723, 761, 780, 959
BspANI GGCC 2 cut(s) 245, 683
BspCNI CTCAG 4 cut(s) 54, 283, 730, 826
BspEI TCCGGA 2 cut(s) 325, 484
BspLI GGNNCC 3 cut(s) 699, 946, 963
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 5 cut(s) 45, 243, 336, 932, 1106
BspQI GCTCTTC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 926, 1037, 1069
BssMI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
BssNI GRCGYC 1 cut(s) 764
Bst2UI CCWGG 4 cut(s) 175, 242, 685, 840
Bst4CI ACNGT 2 cut(s) 574, 1093
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 1 cut(s) 764
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 247, 361, 957, 1075
BstDEI CTNAG 5 cut(s) 62, 291, 660, 738, 834
BstEII GGTNACC 1 cut(s) 1136
BstF5I GGATG 1 cut(s) 743
BstKTI GATC 7 cut(s) 40, 105, 238, 331, 927, 1114, 1245
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
BstMWI GCNNNNNNNGC 4 cut(s) 360, 653, 767, 860
BstNI CCWGG 4 cut(s) 175, 242, 685, 840
BstNSI RCATGY 2 cut(s) 505, 1006
BstPI GGTNACC 1 cut(s) 1136
BstSCI CCNGG 5 cut(s) 173, 231, 240, 683, 838
BstSFI CTRYAG 2 cut(s) 573, 648
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 5 cut(s) 124, 367, 668, 745, 828
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 2 cut(s) 245, 683
BtrI CACGTC 1 cut(s) 1107
BtsCI GGATG 1 cut(s) 743
Cac8I GCNNGC 4 cut(s) 247, 361, 957, 1075
CaiI CAGNNNCTG 1 cut(s) 690
Cfr13I GGNCC 4 cut(s) 196, 945, 961, 1100
CseI GACGC 2 cut(s) 753, 822
Csp6I GTAC 3 cut(s) 66, 376, 637
CviAII CATG 7 cut(s) 166, 260, 502, 694, 703, 949, 1003
CviQI GTAC 3 cut(s) 66, 376, 637
DdeI CTNAG 5 cut(s) 62, 291, 660, 738, 834
DpnI GATC 7 cut(s) 39, 104, 237, 330, 926, 1113, 1244
DpnII GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
EaeI YGGCCR 2 cut(s) 243, 681
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco47I GGWCC 4 cut(s) 196, 945, 961, 1100
Eco57I CTGAAG 2 cut(s) 36, 558
Eco91I GGTNACC 1 cut(s) 1136
EcoO65I GGTNACC 1 cut(s) 1136
EcoRII CCWGG 4 cut(s) 173, 240, 683, 838
EcoT22I ATGCAT 1 cut(s) 1004
Esp3I CGTCTC 1 cut(s) 782
FaeI CATG 7 cut(s) 169, 263, 505, 697, 706, 952, 1006
FaqI GGGAC 2 cut(s) 532, 604
FatI CATG 7 cut(s) 165, 259, 501, 693, 702, 948, 1002
FauI CCCGC 1 cut(s) 558
Fnu4HI GCNGC 8 cut(s) 113, 381, 564, 657, 681, 759, 762, 817
FokI GGATG 1 cut(s) 730
Fsp4HI GCNGC 8 cut(s) 113, 381, 564, 657, 681, 759, 762, 817
FspBI CTAG 2 cut(s) 360, 966
GluI GCNGC 8 cut(s) 113, 381, 564, 657, 681, 759, 762, 817
GsaI CCCAGC 1 cut(s) 594
HaeIII GGCC 2 cut(s) 245, 683
HapII CCGG 5 cut(s) 35, 233, 326, 485, 1115
HgaI GACGC 2 cut(s) 753, 822
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 7 cut(s) 169, 263, 505, 697, 706, 952, 1006
HincII GTYRAC 2 cut(s) 397, 1120
HindII GTYRAC 2 cut(s) 397, 1120
HinfI GANTC 6 cut(s) 5, 299, 413, 579, 980, 1033
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 5 cut(s) 35, 233, 326, 485, 1115
HphI GGTGA 5 cut(s) 440, 868, 1148, 1171, 1237
Hpy166II GTNNAC 4 cut(s) 32, 397, 507, 1120
Hpy188I TCNGA 8 cut(s) 192, 292, 739, 802, 914, 996, 1104, 1182
Hpy188III TCNNGA 6 cut(s) 106, 326, 485, 674, 889, 1042
Hpy8I GTNNAC 4 cut(s) 32, 397, 507, 1120
Hpy99I CGWCG 4 cut(s) 103, 816, 1108, 1204
HpyAV CCTTC 3 cut(s) 197, 757, 926
HpyCH4III ACNGT 2 cut(s) 574, 1093
HpyCH4IV ACGT 5 cut(s) 135, 181, 791, 1106, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 653, 767, 860
HpyF3I CTNAG 5 cut(s) 62, 291, 660, 738, 834
HpySE526I ACGT 5 cut(s) 135, 181, 791, 1106, 1199
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 7 cut(s) 169, 263, 505, 697, 706, 952, 1006
Kpn2I TCCGGA 2 cut(s) 325, 484
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 487, 703
Lsp1109I GCAGC 5 cut(s) 124, 367, 668, 745, 828
LweI GCATC 2 cut(s) 483, 942
MaeI CTAG 2 cut(s) 360, 966
MaeII ACGT 5 cut(s) 135, 181, 791, 1106, 1199
MaeIII GTNAC 5 cut(s) 182, 446, 874, 1060, 1136
MalI GATC 7 cut(s) 39, 104, 237, 330, 926, 1113, 1244
MbiI CCGCTC 1 cut(s) 566
MboI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
MboII GAAGA 3 cut(s) 551, 818, 1042
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 34, 532, 1075
MlsI TGGCCA 1 cut(s) 245
MluCI AATT 2 cut(s) 90, 625
MluNI TGGCCA 1 cut(s) 245
MlyI GAGTC 4 cut(s) 14, 308, 407, 573
MmeI TCCRAC 2 cut(s) 223, 1127
MnlI CCTC 9 cut(s) 115, 173, 418, 646, 670, 796, 896, 901, 1150
Mox20I TGGCCA 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 1004
MroI TCCGGA 2 cut(s) 325, 484
MscI TGGCCA 1 cut(s) 245
MseI TTAA 4 cut(s) 216, 396, 821, 1221
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 5 cut(s) 35, 233, 326, 485, 1115
MspR9I CCNGG 5 cut(s) 175, 233, 242, 685, 840
MvaI CCWGG 4 cut(s) 175, 242, 685, 840
MwoI GCNNNNNNNGC 4 cut(s) 360, 653, 767, 860
NciI CCSGG 1 cut(s) 233
NdeII GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 7 cut(s) 169, 263, 505, 697, 706, 952, 1006
NlaIV GGNNCC 3 cut(s) 699, 946, 963
NmuCI GTSAC 3 cut(s) 446, 874, 1136
NsiI ATGCAT 1 cut(s) 1004
NspI RCATGY 2 cut(s) 505, 1006
PciSI GCTCTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 980, 1033
PkrI GCNGC 8 cut(s) 114, 382, 565, 658, 682, 760, 763, 818
PleI GAGTC 4 cut(s) 13, 307, 407, 573
PpsI GAGTC 4 cut(s) 13, 307, 407, 573
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 4 cut(s) 173, 240, 683, 838
PspEI GGTNACC 1 cut(s) 1136
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 4 cut(s) 173, 240, 683, 838
PspN4I GGNNCC 3 cut(s) 699, 946, 963
PspPI GGNCC 4 cut(s) 196, 945, 961, 1100
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 3 cut(s) 67, 377, 638
RsaNI GTAC 3 cut(s) 66, 376, 637
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 4 cut(s) 216, 396, 821, 1221
SatI GCNGC 8 cut(s) 113, 381, 564, 657, 681, 759, 762, 817
Sau3AI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
Sau96I GGNCC 4 cut(s) 196, 945, 961, 1100
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 4 cut(s) 14, 308, 407, 573
ScrFI CCNGG 5 cut(s) 175, 233, 242, 685, 840
SduI GDGCHC 3 cut(s) 34, 532, 1075
SfaNI GCATC 2 cut(s) 483, 942
SfcI CTRYAG 2 cut(s) 573, 648
SinI GGWCC 4 cut(s) 196, 945, 961, 1100
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 5 cut(s) 83, 265, 630, 1154, 1234
SmoI CTYRAG 5 cut(s) 83, 265, 630, 1154, 1234
Sse9I AATT 2 cut(s) 90, 625
SsiI CCGC 8 cut(s) 472, 551, 564, 680, 723, 761, 780, 959
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 360, 966
StyD4I CCNGG 5 cut(s) 173, 231, 240, 683, 838
TaaI ACNGT 2 cut(s) 574, 1093
TaiI ACGT 5 cut(s) 138, 184, 794, 1109, 1202
TaqI TCGA 4 cut(s) 98, 273, 411, 1088
TasI AATT 2 cut(s) 90, 625
TatI WGTACW 1 cut(s) 65
TauI GCSGC 3 cut(s) 566, 683, 764
TfiI GAWTC 2 cut(s) 980, 1033
Tru1I TTAA 4 cut(s) 216, 396, 821, 1221
Tru9I TTAA 4 cut(s) 216, 396, 821, 1221
TseFI GTSAC 3 cut(s) 446, 874, 1136
TseI GCWGC 5 cut(s) 112, 380, 656, 758, 816
Tsp45I GTSAC 3 cut(s) 446, 874, 1136
TspDTI ATGAA 1 cut(s) 87
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 4 cut(s) 196, 945, 961, 1100
XceI RCATGY 2 cut(s) 505, 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XspI CTAG 2 cut(s) 360, 966
ZrmI AGTACT 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.