Rorug03G0221900

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000734
Physical Location & Seq
Reverse (-)
20224146 .. 20226064
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0221900.1

Sequence Viewer

Length: 1086 bp
ATGGCACTGTCTCCAGAGCAAGAACACCCCAGGAAAGCATTTGGATGGGCTGCAAGAGATACATCTGGTGTTCTCTCTCCCTTCAAATTCTCAAGAAGGGAAACAGGAGCGACGGACGTAAGATTCAAAGTGTTATACTGTGGAGTATGCCATTCGGACATTCACATGGCCAAAAATGATTGGGGGATTTCTACCTATCCTATAGTACCTGGGCATGAACTTGTTGGTGTAGTGACAGAGGTAGGGTGCAAAGTAAATAAATTCAAAGTTGGAGACAAGGTCGGAGTTGGTTGCATGGTGGACTCTGACCGAACTTGTGATAATTGTGTCCACCACCTAGAAAATTACTGTCCCCAACTGATACAAACCTACAGTTCCAAGTACTATGATGGAACCATGACATACGGAGGTTACTCGAACAACATGGTGACTGATGAGCACTTCATTGTTCGTATCCCGGACAACTTACCACTTGATGGCGTTGCTCCGCTTCTATGTGCCGGGATTACAACCTACAGCCCGTTGAGATATTATGGACTTGACAAACCTGGTATGCATCTTGGTGTGAATGGCCTAGGTGGTTTAGGTCACGTGGCCGTGAAATTTGCCAAGGCTTTGGGGCTCAGGGTTACAGTGATTAGTACCTCCCCTAATAAGAAGAAGGCAGCTATGGAACATCTCCGTGCTGATGCATTTTTGCTCAGCACTGACCAAGATCAAATGGAGGCTGCCATGGGAACAATGAATGGCATCATCGACACAGTTCCTGCAGTTCGACCTCTAGAGCCTTTGATTAAATTGTTGAAGACTAATGGAAAGGTTGTTACCATTGGTATAACGGTGCAGCCACTCGATCTTCCAGTTTTTCCTTTGGACCTCGGAAGGAAGATGGTAGCTGGCAGTGCCTTTGGAGGTATGAAGGAGACACAAGAGATGATTGATTTTGCTGCTGAACATAACATAATAGCTGACACTGAGGTTATTCCGATTGATTACCTGAACACCGCTATGGAACGCGTTGTCAAAAAAGATGTCAGGTTTCGATTTGTCATAGACATTGAGAACACATTGAAGTCCGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

361

Amino Acids

39.59

Weight (kDa)

6.41

Isoelectric Point (pI)

26.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 37 - 154 4.4e-24 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 194 - 317 1.8e-18 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 476
AccII CGCG 1 cut(s) 1017
AciI CCGC 2 cut(s) 488, 1005
AcoI YGGCCR 2 cut(s) 168, 594
AcsI RAATTY 3 cut(s) 86, 260, 602
AcvI CACGTG 1 cut(s) 592
AfaI GTAC 3 cut(s) 207, 383, 643
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 1015
AgsI TTSAA 5 cut(s) 85, 127, 265, 805, 1072
AjnI CCWGG 3 cut(s) 29, 208, 547
AluBI AGCT 3 cut(s) 668, 896, 968
AluI AGCT 3 cut(s) 668, 896, 968
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 3 cut(s) 15, 267, 917
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 3 cut(s) 168, 571, 594
ApeKI GCWGC 5 cut(s) 50, 665, 728, 844, 947
ApoI RAATTY 3 cut(s) 86, 260, 602
ArsI GACNNNNNNTTYG 2 cut(s) 1017, 1049
AspA2I CCTAGG 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 874
AsuC2I CCSGG 2 cut(s) 458, 502
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 1 cut(s) 874
AvrII CCTAGG 1 cut(s) 574
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 624
BbrPI CACGTG 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 812
Bbv12I GWGCWC 1 cut(s) 441
BbvI GCAGC 5 cut(s) 37, 677, 715, 856, 934
BccI CCATC 4 cut(s) 39, 383, 470, 883
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 3 cut(s) 31, 210, 549
BciVI GTATCC 1 cut(s) 464
BcnI CCSGG 2 cut(s) 458, 502
BcoDI GTCTC 3 cut(s) 15, 267, 917
BfaI CTAG 3 cut(s) 338, 575, 782
BfmI CTRYAG 4 cut(s) 201, 370, 514, 768
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 5 cut(s) 51, 666, 729, 845, 948
BlnI CCTAGG 1 cut(s) 574
BlpI GCTNAGC 1 cut(s) 701
BlsI GCNGC 5 cut(s) 52, 667, 730, 846, 949
BmcAI AGTACT 1 cut(s) 383
Bme1390I CCNGG 5 cut(s) 31, 210, 458, 502, 549
Bme18I GGWCC 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 1 cut(s) 394
BmrFI CCNGG 5 cut(s) 31, 210, 458, 502, 549
BmsI GCATC 3 cut(s) 565, 679, 759
BpiI GAAGAC 1 cut(s) 812
Bpu10I CCTNAGC 1 cut(s) 623
Bpu1102I GCTNAGC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 76
BpuMI CCSGG 2 cut(s) 458, 502
BsaAI YACGTR 1 cut(s) 592
BsaJI CCNNGG 6 cut(s) 29, 209, 574, 609, 732, 877
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 860
BseBI CCWGG 3 cut(s) 31, 210, 549
BseDI CCNNGG 6 cut(s) 29, 209, 574, 609, 732, 877
BseGI GGATG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 3 cut(s) 637, 715, 966
BseNI ACTGG 1 cut(s) 860
BseXI GCAGC 5 cut(s) 37, 677, 715, 856, 934
BsgI GTGCAG 1 cut(s) 863
Bsh1236I CGCG 1 cut(s) 1017
BshFI GGCC 3 cut(s) 170, 573, 596
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 2 cut(s) 458, 501
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 3 cut(s) 15, 267, 917
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 3 cut(s) 170, 573, 596
Bsp1286I GDGCHC 2 cut(s) 441, 624
Bsp143I GATC 2 cut(s) 715, 853
Bsp1720I GCTNAGC 1 cut(s) 701
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 2 cut(s) 488, 1005
BspANI GGCC 3 cut(s) 170, 573, 596
BspCNI CTCAG 3 cut(s) 636, 714, 967
BspFNI CGCG 1 cut(s) 1017
BspLI GGNNCC 1 cut(s) 394
BspMAI CTGCAG 1 cut(s) 772
BsrI ACTGG 1 cut(s) 860
BssECI CCNNGG 6 cut(s) 29, 209, 574, 609, 732, 877
BssMI GATC 2 cut(s) 715, 853
BssT1I CCWWGG 3 cut(s) 574, 609, 732
Bst2UI CCWGG 3 cut(s) 31, 210, 549
Bst4CI ACNGT 8 cut(s) 9, 140, 350, 374, 634, 763, 841, 1082
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 898
BstDEI CTNAG 3 cut(s) 623, 701, 975
BstDSI CCRYGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 50
BstFNI CGCG 1 cut(s) 1017
BstKTI GATC 2 cut(s) 718, 856
BstMAI GTCTC 3 cut(s) 15, 267, 917
BstMBI GATC 2 cut(s) 715, 853
BstMWI GCNNNNNNNGC 1 cut(s) 902
BstNI CCWGG 3 cut(s) 31, 210, 549
BstSCI CCNGG 5 cut(s) 29, 208, 456, 500, 547
BstSFI CTRYAG 4 cut(s) 201, 370, 514, 768
BstUI CGCG 1 cut(s) 1017
BstV1I GCAGC 5 cut(s) 37, 677, 715, 856, 934
BstV2I GAAGAC 1 cut(s) 812
BstXI CCANNNNNNTGG 1 cut(s) 616
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 3 cut(s) 170, 573, 596
BtgI CCRYGG 1 cut(s) 732
BtsCI GGATG 1 cut(s) 50
BtsI GCAGTG 1 cut(s) 907
BtsIMutI CAGTG 5 cut(s) 5, 639, 705, 907, 972
Cac8I GCNNGC 1 cut(s) 898
CaiI CAGNNNCTG 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 874
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 3 cut(s) 206, 382, 642
CviAII CATG 6 cut(s) 166, 215, 295, 397, 424, 733
CviQI GTAC 3 cut(s) 206, 382, 642
DdeI CTNAG 3 cut(s) 623, 701, 975
DpnI GATC 2 cut(s) 717, 855
DpnII GATC 2 cut(s) 715, 853
EaeI YGGCCR 2 cut(s) 168, 594
Eco130I CCWWGG 3 cut(s) 574, 609, 732
Eco24I GRGCYC 1 cut(s) 624
Eco47I GGWCC 1 cut(s) 874
Eco72I CACGTG 1 cut(s) 592
EcoRII CCWGG 3 cut(s) 29, 208, 547
EcoT14I CCWWGG 3 cut(s) 574, 609, 732
EcoT22I ATGCAT 2 cut(s) 558, 694
EcoT38I GRGCYC 1 cut(s) 624
ErhI CCWWGG 3 cut(s) 574, 609, 732
FaeI CATG 6 cut(s) 169, 218, 298, 400, 427, 736
FaqI GGGAC 1 cut(s) 336
FatI CATG 6 cut(s) 165, 214, 294, 396, 423, 732
Fnu4HI GCNGC 5 cut(s) 51, 666, 729, 845, 948
FokI GGATG 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 624
Fsp4HI GCNGC 5 cut(s) 51, 666, 729, 845, 948
FspBI CTAG 3 cut(s) 338, 575, 782
GluI GCNGC 5 cut(s) 51, 666, 729, 845, 948
HaeIII GGCC 3 cut(s) 170, 573, 596
HapII CCGG 2 cut(s) 458, 501
Hin1II CATG 6 cut(s) 169, 218, 298, 400, 427, 736
HinfI GANTC 2 cut(s) 123, 302
HpaII CCGG 2 cut(s) 458, 501
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 301, 331
Hpy188I TCNGA 6 cut(s) 157, 284, 307, 881, 987, 1078
Hpy188III TCNNGA 3 cut(s) 14, 93, 782
Hpy8I GTNNAC 2 cut(s) 301, 331
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 5 cut(s) 90, 91, 655, 876, 913
HpyCH4III ACNGT 8 cut(s) 9, 140, 350, 374, 634, 763, 841, 1082
HpyCH4IV ACGT 2 cut(s) 117, 591
HpyCH4V TGCA 7 cut(s) 53, 249, 294, 556, 692, 770, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 902
HpyF3I CTNAG 3 cut(s) 623, 701, 975
HpySE526I ACGT 2 cut(s) 117, 591
Hsp92II CATG 6 cut(s) 169, 218, 298, 400, 427, 736
Kzo9I GATC 2 cut(s) 715, 853
LmnI GCTCC 2 cut(s) 107, 490
Lsp1109I GCAGC 5 cut(s) 37, 677, 715, 856, 934
LweI GCATC 3 cut(s) 565, 679, 759
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 3 cut(s) 338, 575, 782
MaeII ACGT 2 cut(s) 117, 591
MaeIII GTNAC 6 cut(s) 232, 410, 427, 587, 628, 823
MalI GATC 2 cut(s) 717, 855
MboI GATC 2 cut(s) 715, 853
MboII GAAGA 4 cut(s) 670, 817, 848, 898
MhlI GDGCHC 2 cut(s) 441, 624
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 6 cut(s) 86, 260, 322, 343, 602, 797
MluI ACGCGT 1 cut(s) 1015
MluNI TGGCCA 1 cut(s) 170
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 250, 262
MnlI CCTC 8 cut(s) 232, 401, 655, 718, 789, 887, 905, 970
Mox20I TGGCCA 1 cut(s) 170
Mph1103I ATGCAT 2 cut(s) 558, 694
MscI TGGCCA 1 cut(s) 170
MseI TTAA 2 cut(s) 795, 1084
MslI CAYNNNNRTG 5 cut(s) 43, 164, 561, 681, 1007
Msp20I TGGCCA 1 cut(s) 170
MspI CCGG 2 cut(s) 458, 501
MspR9I CCNGG 5 cut(s) 31, 210, 458, 502, 549
MvaI CCWGG 3 cut(s) 31, 210, 549
MvnI CGCG 1 cut(s) 1017
MwoI GCNNNNNNNGC 1 cut(s) 902
NciI CCSGG 2 cut(s) 458, 502
NcoI CCATGG 1 cut(s) 732
NdeII GATC 2 cut(s) 715, 853
NlaIII CATG 6 cut(s) 169, 218, 298, 400, 427, 736
NlaIV GGNNCC 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 232, 427, 587
NsiI ATGCAT 2 cut(s) 558, 694
PfeI GAWTC 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 476
PfoI TCCNGGA 1 cut(s) 456
PkrI GCNGC 5 cut(s) 52, 667, 730, 846, 949
PleI GAGTC 1 cut(s) 296
PmaCI CACGTG 1 cut(s) 592
PmlI CACGTG 1 cut(s) 592
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 1 cut(s) 592
Psp6I CCWGG 3 cut(s) 29, 208, 547
PspCI CACGTG 1 cut(s) 592
PspGI CCWGG 3 cut(s) 29, 208, 547
PspN4I GGNNCC 1 cut(s) 394
PspPI GGNCC 1 cut(s) 874
PstI CTGCAG 1 cut(s) 772
PstNI CAGNNNCTG 1 cut(s) 767
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 3 cut(s) 207, 383, 643
RsaNI GTAC 3 cut(s) 206, 382, 642
RseI CAYNNNNRTG 5 cut(s) 43, 164, 561, 681, 1007
SaqAI TTAA 2 cut(s) 795, 1084
SatI GCNGC 5 cut(s) 51, 666, 729, 845, 948
Sau3AI GATC 2 cut(s) 715, 853
Sau96I GGNCC 1 cut(s) 874
ScaI AGTACT 1 cut(s) 383
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 5 cut(s) 31, 210, 458, 502, 549
SduI GDGCHC 2 cut(s) 441, 624
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 3 cut(s) 565, 679, 759
SfcI CTRYAG 4 cut(s) 201, 370, 514, 768
SinI GGWCC 1 cut(s) 874
SmiMI CAYNNNNRTG 5 cut(s) 43, 164, 561, 681, 1007
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 6 cut(s) 86, 260, 322, 343, 602, 797
SsiI CCGC 2 cut(s) 488, 1005
SspMI CTAG 3 cut(s) 338, 575, 782
StyD4I CCNGG 5 cut(s) 29, 208, 456, 500, 547
StyI CCWWGG 3 cut(s) 574, 609, 732
TaaI ACNGT 8 cut(s) 9, 140, 350, 374, 634, 763, 841, 1082
TaiI ACGT 2 cut(s) 120, 594
TaqI TCGA 5 cut(s) 416, 756, 775, 852, 1042
TaqII GACCGA 1 cut(s) 324
TasI AATT 6 cut(s) 86, 260, 322, 343, 602, 797
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 795, 1084
Tru9I TTAA 2 cut(s) 795, 1084
TscAI CASTG 5 cut(s) 12, 639, 712, 907, 979
TseFI GTSAC 3 cut(s) 232, 427, 587
TseI GCWGC 5 cut(s) 50, 665, 728, 844, 947
Tsp45I GTSAC 3 cut(s) 232, 427, 587
TspDTI ATGAA 4 cut(s) 231, 433, 758, 932
TspGWI ACGGA 3 cut(s) 128, 420, 671
TspRI CASTG 5 cut(s) 12, 639, 712, 907, 979
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 3 cut(s) 86, 260, 602
XbaI TCTAGA 1 cut(s) 781
XmaJI CCTAGG 1 cut(s) 574
XspI CTAG 3 cut(s) 338, 575, 782
ZrmI AGTACT 1 cut(s) 383
Zsp2I ATGCAT 2 cut(s) 558, 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.