Rh7AG099200

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000734
Physical Location & Seq
Forward (+)
7556861 .. 7557283
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG099200.1

Sequence Viewer

Length: 423 bp
ATGCATGTGTTGAACATTGGAGGTGGCTTCGTGTCCGAACCATCTTTATTTGAAGCTGCGGCGTCAGCCGTGAAAATCGCTGTGGAGACGTATTTTTCAAAGGAAGAGCTAAGCAGCTTAACGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTTTCACCAACATTATCGGAAGCGCAAGAGAGGGGAGCTCAGAACCCTACTTGAAGGGTTTTATACGTGAGGACCCTAGAACCCTACTTGAATCATGCATTGCTCTGAAATGCATGTCCAATAACAGTGACGACATCGAGAAGAATCCAGTCTTGAAAGTATGTGACAAAGGTACTGGTGGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCGACGTCTGATCCGGCTGACAAGGTGTTGGAGGGCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

140

Amino Acids

14.96

Weight (kDa)

4.79

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 1 - 51 3.7e-07 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 389
AciI CCGC 2 cut(s) 59, 159
AclWI GGATC 1 cut(s) 386
AcvI CACGTG 1 cut(s) 420
AcyI GRCGYC 2 cut(s) 62, 386
AfaI GTAC 1 cut(s) 343
AgsI TTSAA 6 cut(s) 13, 53, 99, 223, 260, 325
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 4 cut(s) 56, 109, 117, 207
AluI AGCT 4 cut(s) 56, 109, 117, 207
Alw21I GWGCWC 2 cut(s) 209, 355
Alw26I GTCTC 2 cut(s) 80, 149
AlwI GGATC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 56, 114
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 241, 380
AsuHPI GGTGA 2 cut(s) 136, 166
AvaII GGWCC 2 cut(s) 241, 380
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 209
BbrPI CACGTG 1 cut(s) 420
Bbv12I GWGCWC 2 cut(s) 209, 355
BbvI GCAGC 2 cut(s) 43, 126
BccI CCATC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 80, 149
BfaI CTAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 57, 60, 115
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 3 cut(s) 58, 61, 116
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 2 cut(s) 241, 380
BmgT120I GGNCC 2 cut(s) 241, 380
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 191, 223
Bpu1102I GCTNAGC 1 cut(s) 110
BsaAI YACGTR 2 cut(s) 236, 420
BsaHI GRCGYC 2 cut(s) 62, 386
BsaI GGTCTC 1 cut(s) 149
BsaXI ACNNNNNCTCC 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 317, 349
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 138
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 317, 349
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 2 cut(s) 43, 126
BsiHKAI GWGCWC 2 cut(s) 209, 355
BsiSI CCGG 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 80, 149
BsmBI CGTCTC 1 cut(s) 80
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 209, 355, 419
Bsp143I GATC 1 cut(s) 391
Bsp1720I GCTNAGC 1 cut(s) 110
BspACI CCGC 2 cut(s) 59, 159
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 386
BspQI GCTCTTC 1 cut(s) 99
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 2 cut(s) 317, 349
BssMI GATC 1 cut(s) 391
BssNI GRCGYC 2 cut(s) 62, 386
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 124, 296, 365, 373
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 2 cut(s) 62, 386
BstBAI YACGTR 2 cut(s) 236, 420
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 110, 208
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 1 cut(s) 394
BstMAI GTCTC 2 cut(s) 80, 149
BstMBI GATC 1 cut(s) 391
BstMWI GCNNNNNNNGC 2 cut(s) 65, 158
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 2 cut(s) 8, 286
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 419
BstV1I GCAGC 2 cut(s) 43, 126
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 241, 380
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 342
CviAII CATG 3 cut(s) 5, 264, 283
CviJI RGCY 9 cut(s) 27, 56, 68, 109, 117, 131, 136, 207, 398
CviKI_1 RGCY 9 cut(s) 27, 56, 68, 109, 117, 131, 136, 207, 398
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 2 cut(s) 110, 208
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Ecl136II GAGCTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 241, 380
Eco53kI GAGCTC 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 207
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 136
EcoT22I ATGCAT 3 cut(s) 6, 269, 284
EcoT38I GRGCYC 1 cut(s) 209
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 3 cut(s) 8, 267, 286
FaiI YATR 5 cut(s) 6, 233, 265, 284, 331
FatI CATG 3 cut(s) 4, 263, 282
Fnu4HI GCNGC 3 cut(s) 57, 60, 115
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 3 cut(s) 57, 60, 115
FspBI CTAG 1 cut(s) 246
GlaI GCGC 1 cut(s) 193
GluI GCNGC 3 cut(s) 57, 60, 115
HapII CCGG 1 cut(s) 395
HgaI GACGC 1 cut(s) 51
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 2 cut(s) 62, 386
Hin1II CATG 3 cut(s) 8, 267, 286
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 2 cut(s) 260, 313
HpaII CCGG 1 cut(s) 395
HphI GGTGA 2 cut(s) 136, 166
Hpy188I TCNGA 6 cut(s) 37, 188, 211, 276, 384, 391
Hpy188III TCNNGA 2 cut(s) 307, 322
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 4 cut(s) 124, 296, 365, 373
HpyCH4IV ACGT 4 cut(s) 89, 235, 386, 419
HpyCH4V TGCA 4 cut(s) 4, 152, 267, 282
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 158
HpyF3I CTNAG 2 cut(s) 110, 208
HpySE526I ACGT 4 cut(s) 89, 235, 386, 419
Hsp92I GRCGYC 2 cut(s) 62, 386
Hsp92II CATG 3 cut(s) 8, 267, 286
HspAI GCGC 1 cut(s) 192
Kzo9I GATC 1 cut(s) 391
LguI GCTCTTC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 5 cut(s) 123, 150, 330, 330, 408
Lsp1109I GCAGC 2 cut(s) 43, 126
MaeI CTAG 1 cut(s) 246
MaeII ACGT 4 cut(s) 89, 235, 386, 419
MaeIII GTNAC 2 cut(s) 296, 332
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 2 cut(s) 116, 322
MhlI GDGCHC 3 cut(s) 209, 355, 419
MmeI TCCRAC 2 cut(s) 390, 407
MnlI CCTC 4 cut(s) 14, 193, 232, 406
Mph1103I ATGCAT 3 cut(s) 6, 269, 284
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 65, 158
NdeII GATC 1 cut(s) 391
NlaIII CATG 3 cut(s) 8, 267, 286
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 296, 332
NsiI ATGCAT 3 cut(s) 6, 269, 284
NspI RCATGY 2 cut(s) 8, 286
PciSI GCTCTTC 1 cut(s) 99
PfeI GAWTC 2 cut(s) 260, 313
PkrI GCNGC 3 cut(s) 58, 61, 116
PmaCI CACGTG 1 cut(s) 420
PmlI CACGTG 1 cut(s) 420
Ppu21I YACGTR 2 cut(s) 236, 420
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 136
PspCI CACGTG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 2 cut(s) 241, 380
PspPPI RGGWCCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
SacI GAGCTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 3 cut(s) 57, 60, 115
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 2 cut(s) 241, 380
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 3 cut(s) 209, 355, 419
SinI GGWCC 2 cut(s) 241, 380
SsiI CCGC 2 cut(s) 59, 159
SspMI CTAG 1 cut(s) 246
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 4 cut(s) 124, 296, 365, 373
TaiI ACGT 4 cut(s) 92, 238, 389, 422
TaqI TCGA 2 cut(s) 306, 368
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 260, 313
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 296, 332
TseI GCWGC 2 cut(s) 56, 114
Tsp45I GTSAC 2 cut(s) 296, 332
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 241, 380
XceI RCATGY 2 cut(s) 8, 286
XspI CTAG 1 cut(s) 246
ZraI GACGTC 1 cut(s) 387
Zsp2I ATGCAT 3 cut(s) 6, 269, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.