Rorug07G0240700

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000734
Physical Location & Seq
Forward (+)
22147117 .. 22147647
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0240700.1

Sequence Viewer

Length: 531 bp
ATGCCGCATCAGGCCTCCTTGCAAGAGCTAATTTCATCGGGGTTTATCTCACAGCTTTCTCCCTCCTTGAAGTTATTGTGGTGCATGATGGTCTGCAACCTTCTATGGTGTATTTGGTCAGAGCGGAACAGCCTAAGGTTTGATGGTGGTACATTCAGTAAGACAAGATTCATGCACTTTTTAGTTAATTCATTAAAAGAGTATGCTAAGCTAGTGTTTTCCACTTCTTCTTCCACTTCCATTATACCAATTTTCAATATTTTAAGGCTCTCTCCTTTGAGACCTTGTGCTCCTAAATTTGTTAGAGTGGTATGGCTGCCCCCACCCTCTCCTTGGATTAAAATCAACATAGATGGGTCCTTTCATAATCATCAGCAAGCTGGGTTCAATGGAATAATCAGGGATCATGACCGGGCTTTTTTTCTTGCATTTGCTTCGAAGTTTAATGTTCCTAGTACTCTGGACGCTGAGGTTCTAGCCTTTATTGAAGCATTCAGCCATACTGTATGCTTGGCAATACTTGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

176

Amino Acids

19.95

Weight (kDa)

8.95

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AciI CCGC 2 cut(s) 5, 124
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 1 cut(s) 296
AfaI GTAC 2 cut(s) 151, 457
AfiI CCNNNNNNNGG 1 cut(s) 333
AgsI TTSAA 4 cut(s) 70, 256, 388, 488
AluBI AGCT 4 cut(s) 28, 55, 211, 380
AluI AGCT 4 cut(s) 28, 55, 211, 380
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 1 cut(s) 411
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 357
AsuC2I CCSGG 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 292
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 303
BccI CCATC 3 cut(s) 82, 137, 347
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 3 cut(s) 212, 453, 476
BisI GCNGC 2 cut(s) 5, 317
BlpI GCTNAGC 1 cut(s) 207
BlsI GCNGC 2 cut(s) 6, 318
BmcAI AGTACT 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 358
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 413
BsaBI GATNNNNATC 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 1 cut(s) 332
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 341
BseDI CCNNGG 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMII CTCAG 1 cut(s) 459
BseXI GCAGC 1 cut(s) 303
BseYI CCCAGC 1 cut(s) 380
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 412
BslI CCNNNNNNNGG 1 cut(s) 333
BsmAI GTCTC 1 cut(s) 274
BsmI GAATGC 1 cut(s) 491
BsnI GGCC 1 cut(s) 14
Bso31I GGTCTC 1 cut(s) 274
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 403
Bsp1720I GCTNAGC 1 cut(s) 207
BspACI CCGC 2 cut(s) 5, 124
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 1 cut(s) 358
BspPI GGATC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 403
BssT1I CCWWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 3 cut(s) 134, 207, 468
BstKTI GATC 1 cut(s) 406
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 303
Bsu36I CCTNAGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 357
CseI GACGC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 150, 456
CspCI CAANNNNNGTGG 1 cut(s) 504
CviAII CATG 3 cut(s) 85, 172, 407
CviQI GTAC 2 cut(s) 150, 456
DdeI CTNAG 3 cut(s) 134, 207, 468
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 332
Eco147I AGGCCT 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 332
FaeI CATG 3 cut(s) 88, 175, 410
FatI CATG 3 cut(s) 84, 171, 406
Fnu4HI GCNGC 2 cut(s) 5, 317
Fsp4HI GCNGC 2 cut(s) 5, 317
FspBI CTAG 3 cut(s) 212, 453, 476
GluI GCNGC 2 cut(s) 5, 317
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 412
HgaI GACGC 1 cut(s) 473
Hin1II CATG 3 cut(s) 88, 175, 410
HinfI GANTC 1 cut(s) 168
HpaII CCGG 1 cut(s) 412
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 407, 461
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 22, 84, 96, 175, 428
HpyF3I CTNAG 3 cut(s) 134, 207, 468
Hsp92II CATG 3 cut(s) 88, 175, 410
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 4 cut(s) 366, 385, 425, 446
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 16
MaeI CTAG 3 cut(s) 212, 453, 476
MalI GATC 1 cut(s) 405
MbiI CCGCTC 1 cut(s) 124
MboI GATC 1 cut(s) 403
MboII GAAGA 2 cut(s) 219, 222
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 4 cut(s) 30, 187, 249, 296
MnlI CCTC 4 cut(s) 25, 73, 337, 463
MseI TTAA 5 cut(s) 186, 194, 263, 339, 444
MspI CCGG 1 cut(s) 412
MspR9I CCNGG 1 cut(s) 413
Mva1269I GAATGC 1 cut(s) 491
NciI CCSGG 1 cut(s) 413
NdeII GATC 1 cut(s) 403
NlaIII CATG 3 cut(s) 88, 175, 410
NlaIV GGNNCC 1 cut(s) 358
NspV TTCGAA 1 cut(s) 437
PagI TCATGA 1 cut(s) 406
PceI AGGCCT 1 cut(s) 14
PctI GAATGC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 2 cut(s) 6, 318
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 1 cut(s) 357
PspPPI RGGWCCY 1 cut(s) 357
RsaI GTAC 2 cut(s) 151, 457
RsaNI GTAC 2 cut(s) 150, 456
SaqAI TTAA 5 cut(s) 186, 194, 263, 339, 444
SatI GCNGC 2 cut(s) 5, 317
Sau3AI GATC 1 cut(s) 403
Sau96I GGNCC 1 cut(s) 357
ScaI AGTACT 1 cut(s) 457
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 1 cut(s) 292
SetI ASST 8 cut(s) 30, 57, 102, 140, 213, 286, 382, 474
SfaNI GCATC 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 357
Sse9I AATT 4 cut(s) 30, 187, 249, 296
SseBI AGGCCT 1 cut(s) 14
SsiI CCGC 2 cut(s) 5, 124
SspI AATATT 1 cut(s) 259
SspMI CTAG 3 cut(s) 212, 453, 476
StuI AGGCCT 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 332
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 437
TasI AATT 4 cut(s) 30, 187, 249, 296
TatI WGTACW 1 cut(s) 455
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 5 cut(s) 186, 194, 263, 339, 444
Tru9I TTAA 5 cut(s) 186, 194, 263, 339, 444
TseI GCWGC 1 cut(s) 316
TspDTI ATGAA 4 cut(s) 24, 160, 180, 353
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 3 cut(s) 212, 453, 476
ZrmI AGTACT 1 cut(s) 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.