RchiOBHm_Chr3g0490331

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000734
Physical Location & Seq
Reverse (-)
36997176 .. 36997721
546 bp
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UTR
Exon/CDS
Intron
PRQ45350

Sequence Viewer

Length: 546 bp
ATGGATGGAAACAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGGGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACTATCAAGAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACTCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCATGGCTCAAGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATCCTAATCCTTGTAAAGCTTGCTCTCACGCCGCAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGATGAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGCATGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

181

Amino Acids

20.19

Weight (kDa)

6.06

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 53 - 167 4.7e-31 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 487
Acc36I ACCTGC 1 cut(s) 487
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 375, 463
AclWI GGATC 2 cut(s) 246, 421
AcoI YGGCCR 1 cut(s) 501
AfaI GTAC 2 cut(s) 70, 519
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 20, 302
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 362, 473
AluI AGCT 2 cut(s) 362, 473
Alw21I GWGCWC 2 cut(s) 37, 527
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 2 cut(s) 246, 421
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 1 cut(s) 501
ApaLI GTGCAC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 236, 443
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 503
Bbv12I GWGCWC 2 cut(s) 37, 527
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 2 cut(s) 236, 443
BfaI CTAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 487
BisI GCNGC 1 cut(s) 375
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 3 cut(s) 178, 236, 443
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 178, 236, 443
BmsI GCATC 1 cut(s) 474
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 236, 443
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 37
BseYI CCCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 503
BsiHKAI GWGCWC 2 cut(s) 37, 527
BsiSI CCGG 3 cut(s) 236, 443, 476
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 37, 527
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 3 cut(s) 238, 331, 426
BspACI CCGC 2 cut(s) 375, 463
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 1 cut(s) 286
BspEI TCCGGA 1 cut(s) 475
BspHI TCATGA 2 cut(s) 48, 73
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 2 cut(s) 246, 421
BspQI GCTCTTC 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 238, 331, 426
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 281, 522
Bst6I CTCTTC 1 cut(s) 532
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 29, 294
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 241, 334, 429
BstMBI GATC 3 cut(s) 238, 331, 426
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 176, 234, 441
BstSLI GKGCMC 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 238, 426
BstYI RGATCY 2 cut(s) 238, 426
BsuRI GGCC 1 cut(s) 503
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 2 cut(s) 48, 73
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 69, 518
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 5 cut(s) 49, 74, 169, 263, 489
CviJI RGCY 6 cut(s) 64, 267, 314, 362, 473, 503
CviKI_1 RGCY 6 cut(s) 64, 267, 314, 362, 473, 503
CviQI GTAC 2 cut(s) 69, 518
DdeI CTNAG 2 cut(s) 29, 294
DpnI GATC 3 cut(s) 240, 333, 428
DpnII GATC 3 cut(s) 238, 331, 426
EaeI YGGCCR 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 532
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 5 cut(s) 52, 77, 172, 266, 492
FaiI YATR 6 cut(s) 50, 75, 170, 264, 423, 490
FatI CATG 5 cut(s) 48, 73, 168, 262, 488
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 375
GsaI CCCAGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 503
HapII CCGG 3 cut(s) 236, 443, 476
Hin1II CATG 5 cut(s) 52, 77, 172, 266, 492
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 2 cut(s) 302, 404
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 3 cut(s) 236, 443, 476
Hpy166II GTNNAC 2 cut(s) 35, 388
Hpy188I TCNGA 3 cut(s) 195, 295, 431
Hpy188III TCNNGA 6 cut(s) 49, 74, 109, 329, 476, 531
Hpy8I GTNNAC 2 cut(s) 35, 388
HpyAV CCTTC 2 cut(s) 200, 217
HpyCH4III ACNGT 2 cut(s) 281, 522
HpyCH4IV ACGT 2 cut(s) 138, 184
HpyCH4V TGCA 5 cut(s) 35, 225, 284, 439, 488
HpyF3I CTNAG 2 cut(s) 29, 294
HpySE526I ACGT 2 cut(s) 138, 184
Hsp92II CATG 5 cut(s) 52, 77, 172, 266, 492
Kpn2I TCCGGA 1 cut(s) 475
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 3 cut(s) 238, 331, 426
LguI GCTCTTC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 478, 493
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 138, 184
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 240, 333, 428
MboI GATC 3 cut(s) 238, 331, 426
MboII GAAGA 2 cut(s) 519, 546
MflI RGATCY 2 cut(s) 238, 426
MhlI GDGCHC 2 cut(s) 37, 527
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 2 cut(s) 55, 434
MluNI TGGCCA 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 4 cut(s) 118, 176, 254, 409
Mox20I TGGCCA 1 cut(s) 503
MroI TCCGGA 1 cut(s) 475
MscI TGGCCA 1 cut(s) 503
MseI TTAA 3 cut(s) 162, 219, 387
Msp20I TGGCCA 1 cut(s) 503
MspI CCGG 3 cut(s) 236, 443, 476
MspR9I CCNGG 3 cut(s) 178, 236, 443
MvaI CCWGG 1 cut(s) 178
NciI CCSGG 2 cut(s) 236, 443
NdeII GATC 3 cut(s) 238, 331, 426
NlaIII CATG 5 cut(s) 52, 77, 172, 266, 492
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 532
PfeI GAWTC 2 cut(s) 302, 404
PkrI GCNGC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 176
PspPI GGNCC 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 402, 434
PsuI RGATCY 2 cut(s) 238, 426
RsaI GTAC 2 cut(s) 70, 519
RsaNI GTAC 2 cut(s) 69, 518
SapI GCTCTTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 162, 219, 387
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 3 cut(s) 238, 331, 426
Sau96I GGNCC 1 cut(s) 199
ScrFI CCNGG 3 cut(s) 178, 236, 443
SduI GDGCHC 2 cut(s) 37, 527
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 55, 434
SsiI CCGC 2 cut(s) 375, 463
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 176, 234, 441
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 281, 522
TaiI ACGT 2 cut(s) 141, 187
TaqI TCGA 2 cut(s) 101, 276
TaqII GACCGA 1 cut(s) 279
TasI AATT 2 cut(s) 55, 434
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 2 cut(s) 302, 404
Tru1I TTAA 3 cut(s) 162, 219, 387
Tru9I TTAA 3 cut(s) 162, 219, 387
TspDTI ATGAA 2 cut(s) 90, 410
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.