Rh4DG311600

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000734
Physical Location & Seq
Reverse (-)
53425381 .. 53427142
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG311600.1

Sequence Viewer

Length: 1119 bp
ATGGATGTAAACAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGAGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACGATCAAGAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACATAACCTTCCGATGGTCCAACCCTTCTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCAAGGCTCAAGTTTCGACTGTGCAAGTTGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATGCTAATCCTTGTAAAGCTTGCTCTCACATCAAGTATGCTGCCGCAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGACGAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTATGGTGCTCTTCCCGAAGAAGTGCCTAAGCTCCTCCAAGCCGCTCAAACTAAAGGACTCAAAGTTGTTGGGGTATCATTTCATATAGGGAGTAAGTCCCACAATTATCAGGCATATAAAACAGCAATACAGGCAGCTAAGGCGGTTTTTCAGGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCGATGCATTGTGCTTTGAAGCTGCGGCATCAGCCGTGAAAACTGCCGTGGACAAGTACTTTTCAAAGGAGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTTAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATGTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTGTGGTATGTGGTAAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

372

Amino Acids

41.32

Weight (kDa)

7.15

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 53 - 286 2.9e-69 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 423
AccII CGCG 1 cut(s) 960
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
AclWI GGATC 4 cut(s) 246, 433, 935, 972
AcoI YGGCCR 2 cut(s) 509, 834
AfaI GTAC 3 cut(s) 70, 797, 970
AfeI AGCGCT 1 cut(s) 975
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 1113
AgsI TTSAA 6 cut(s) 20, 302, 718, 758, 804, 983
AjiI CACGTC 1 cut(s) 1114
AjnI CCWGG 2 cut(s) 176, 1042
AluBI AGCT 5 cut(s) 362, 485, 556, 662, 761
AluI AGCT 5 cut(s) 362, 485, 556, 662, 761
Alw21I GWGCWC 3 cut(s) 37, 535, 1082
Alw26I GTCTC 1 cut(s) 854
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 4 cut(s) 246, 433, 935, 972
Aor13HI TCCGGA 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 975
AoxI GGCC 2 cut(s) 509, 834
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 383, 659, 761
AspLEI GCGC 2 cut(s) 960, 976
AspS9I GGNCC 2 cut(s) 199, 1107
AsuC2I CCSGG 3 cut(s) 236, 455, 843
AvaII GGWCC 2 cut(s) 199, 1107
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 843
Bbv12I GWGCWC 3 cut(s) 37, 535, 1082
BbvI GCAGC 3 cut(s) 370, 671, 748
BccI CCATC 2 cut(s) 190, 826
BceAI ACGGC 3 cut(s) 758, 770, 879
BciT130I CCWGG 2 cut(s) 178, 1044
BcnI CCSGG 3 cut(s) 236, 455, 843
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 2 cut(s) 86, 977
BfoI RGCGCY 1 cut(s) 977
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 6 cut(s) 384, 387, 567, 660, 762, 765
BlsI GCNGC 6 cut(s) 385, 388, 568, 661, 763, 766
BmcAI AGTACT 2 cut(s) 70, 797
Bme1390I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
Bme18I GGWCC 2 cut(s) 199, 1107
BmgBI CACGTC 1 cut(s) 1114
BmgT120I GGNCC 2 cut(s) 199, 1107
BmiI GGNNCC 2 cut(s) 941, 949
BmrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
BmsI GCATC 4 cut(s) 486, 733, 776, 945
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 2 cut(s) 552, 663
BpuEI CTTGAG 2 cut(s) 246, 253
BpuMI CCSGG 3 cut(s) 236, 455, 843
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 252, 786, 943, 1042
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 929
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 2 cut(s) 178, 1044
BseDI CCNNGG 4 cut(s) 252, 786, 943, 1042
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 56, 285
BseNI ACTGG 1 cut(s) 929
BseRI GAGGAG 3 cut(s) 233, 548, 824
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 370, 671, 748
Bsh1236I CGCG 1 cut(s) 960
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 2 cut(s) 511, 836
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 3 cut(s) 37, 535, 1082
BsiSI CCGG 4 cut(s) 236, 455, 488, 843
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 607
BsnI GGCC 2 cut(s) 511, 836
Bsp1286I GDGCHC 4 cut(s) 37, 535, 843, 1082
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 6 cut(s) 105, 238, 331, 438, 927, 964
Bsp19I CCATGG 1 cut(s) 943
BspACI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
BspANI GGCC 2 cut(s) 511, 836
BspCNI CTCAG 2 cut(s) 57, 286
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 2 cut(s) 941, 949
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 4 cut(s) 246, 433, 935, 972
BspQI GCTCTTC 1 cut(s) 540
BsrBI CCGCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 4 cut(s) 252, 786, 943, 1042
BssMI GATC 6 cut(s) 105, 238, 331, 438, 927, 964
BssT1I CCWWGG 2 cut(s) 252, 943
Bst2UI CCWGG 2 cut(s) 178, 1044
Bst4CI ACNGT 3 cut(s) 281, 1019, 1092
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 364, 698, 876, 1082
BstDEI CTNAG 5 cut(s) 29, 65, 294, 552, 663
BstDSI CCRYGG 2 cut(s) 786, 943
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 2 cut(s) 960, 976
BstKTI GATC 6 cut(s) 108, 241, 334, 441, 930, 967
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 6 cut(s) 105, 238, 331, 438, 927, 964
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
BstNI CCWGG 2 cut(s) 178, 1044
BstNSI RCATGY 3 cut(s) 700, 713, 1009
BstSCI CCNGG 5 cut(s) 176, 234, 453, 841, 1042
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 370, 671, 748
BstX2I RGATCY 2 cut(s) 238, 438
BstYI RGATCY 2 cut(s) 238, 438
BsuRI GGCC 2 cut(s) 511, 836
BtgI CCRYGG 2 cut(s) 786, 943
BtrI CACGTC 1 cut(s) 1114
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 4 cut(s) 364, 698, 876, 1082
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 2 cut(s) 960, 976
Cfr13I GGNCC 2 cut(s) 199, 1107
Csp6I GTAC 3 cut(s) 69, 796, 969
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 9 cut(s) 49, 74, 169, 697, 706, 710, 944, 952, 1006
CviQI GTAC 3 cut(s) 69, 796, 969
DdeI CTNAG 5 cut(s) 29, 65, 294, 552, 663
DpnI GATC 6 cut(s) 107, 240, 333, 440, 929, 966
DpnII GATC 6 cut(s) 105, 238, 331, 438, 927, 964
EaeI YGGCCR 2 cut(s) 509, 834
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 698
Eco130I CCWWGG 2 cut(s) 252, 943
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 2 cut(s) 199, 1107
Eco47III AGCGCT 1 cut(s) 975
EcoRII CCWGG 2 cut(s) 176, 1042
EcoT14I CCWWGG 2 cut(s) 252, 943
EcoT22I ATGCAT 3 cut(s) 711, 748, 1007
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 252, 943
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
FaqI GGGAC 1 cut(s) 607
FatI CATG 9 cut(s) 48, 73, 168, 696, 705, 709, 943, 951, 1005
FblI GTMKAC 1 cut(s) 423
Fnu4HI GCNGC 6 cut(s) 384, 387, 567, 660, 762, 765
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 6 cut(s) 384, 387, 567, 660, 762, 765
FspBI CTAG 2 cut(s) 86, 977
GlaI GCGC 2 cut(s) 959, 975
GluI GCNGC 6 cut(s) 384, 387, 567, 660, 762, 765
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 2 cut(s) 511, 836
HapII CCGG 4 cut(s) 236, 455, 488, 843
HhaI GCGC 2 cut(s) 960, 976
Hin1II CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
Hin6I GCGC 2 cut(s) 958, 974
HinP1I GCGC 2 cut(s) 958, 974
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 4 cut(s) 302, 416, 582, 983
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 4 cut(s) 236, 455, 488, 843
Hpy166II GTNNAC 5 cut(s) 10, 35, 400, 424, 790
Hpy188I TCNGA 6 cut(s) 195, 295, 443, 742, 999, 1111
Hpy188III TCNNGA 7 cut(s) 49, 74, 109, 329, 488, 539, 677
Hpy8I GTNNAC 5 cut(s) 10, 35, 400, 424, 790
Hpy99I CGWCG 2 cut(s) 106, 1115
HpyAV CCTTC 3 cut(s) 200, 217, 929
HpyCH4III ACNGT 3 cut(s) 281, 1019, 1092
HpyCH4IV ACGT 2 cut(s) 138, 1113
HpyCH4V TGCA 9 cut(s) 35, 225, 284, 451, 696, 709, 746, 990, 1005
HpyF10VI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
HpyF3I CTNAG 5 cut(s) 29, 65, 294, 552, 663
HpySE526I ACGT 2 cut(s) 138, 1113
Hsp92II CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
HspAI GCGC 2 cut(s) 958, 974
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 6 cut(s) 105, 238, 331, 438, 927, 964
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 5 cut(s) 490, 501, 561, 811, 953
Lsp1109I GCAGC 3 cut(s) 370, 671, 748
LweI GCATC 4 cut(s) 486, 733, 776, 945
MaeI CTAG 2 cut(s) 86, 977
MaeII ACGT 2 cut(s) 138, 1113
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 6 cut(s) 107, 240, 333, 440, 929, 966
MbiI CCGCTC 1 cut(s) 569
MboI GATC 6 cut(s) 105, 238, 331, 438, 927, 964
MboII GAAGA 3 cut(s) 527, 554, 1048
MflI RGATCY 2 cut(s) 238, 438
MhlI GDGCHC 4 cut(s) 37, 535, 843, 1082
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 3 cut(s) 55, 446, 628
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 1 cut(s) 226
Mox20I TGGCCA 1 cut(s) 511
Mph1103I ATGCAT 3 cut(s) 711, 748, 1007
MroI TCCGGA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 511
MseI TTAA 4 cut(s) 162, 219, 399, 824
MslI CAYNNNNRTG 1 cut(s) 710
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 4 cut(s) 236, 455, 488, 843
MspR9I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
MvaI CCWGG 2 cut(s) 178, 1044
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
NciI CCSGG 3 cut(s) 236, 455, 843
NcoI CCATGG 1 cut(s) 943
NdeII GATC 6 cut(s) 105, 238, 331, 438, 927, 964
NlaIII CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
NlaIV GGNNCC 2 cut(s) 941, 949
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 1 cut(s) 1022
NsiI ATGCAT 3 cut(s) 711, 748, 1007
NspI RCATGY 3 cut(s) 700, 713, 1009
PaeI GCATGC 1 cut(s) 700
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 302, 416, 983
PkrI GCNGC 6 cut(s) 385, 388, 568, 661, 763, 766
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 176, 1042
PspGI CCWGG 2 cut(s) 176, 1042
PspN4I GGNNCC 2 cut(s) 941, 949
PspPI GGNCC 2 cut(s) 199, 1107
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PsuI RGATCY 2 cut(s) 238, 438
RsaI GTAC 3 cut(s) 70, 797, 970
RsaNI GTAC 3 cut(s) 69, 796, 969
RseI CAYNNNNRTG 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 162, 219, 399, 824
SatI GCNGC 6 cut(s) 384, 387, 567, 660, 762, 765
Sau3AI GATC 6 cut(s) 105, 238, 331, 438, 927, 964
Sau96I GGNCC 2 cut(s) 199, 1107
ScaI AGTACT 2 cut(s) 70, 797
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
SduI GDGCHC 4 cut(s) 37, 535, 843, 1082
SfaNI GCATC 4 cut(s) 486, 733, 776, 945
SinI GGWCC 2 cut(s) 199, 1107
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 2 cut(s) 261, 268
SmoI CTYRAG 2 cut(s) 261, 268
SphI GCATGC 1 cut(s) 700
Sse9I AATT 3 cut(s) 55, 446, 628
SsiI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 977
StyD4I CCNGG 5 cut(s) 176, 234, 453, 841, 1042
StyI CCWWGG 2 cut(s) 252, 943
TaaI ACNGT 3 cut(s) 281, 1019, 1092
TaiI ACGT 2 cut(s) 141, 1116
TaqI TCGA 3 cut(s) 101, 276, 1095
TasI AATT 3 cut(s) 55, 446, 628
TatI WGTACW 2 cut(s) 68, 795
TauI GCSGC 3 cut(s) 389, 569, 767
TfiI GAWTC 3 cut(s) 302, 416, 983
Tru1I TTAA 4 cut(s) 162, 219, 399, 824
Tru9I TTAA 4 cut(s) 162, 219, 399, 824
TseFI GTSAC 1 cut(s) 1022
TseI GCWGC 3 cut(s) 383, 659, 761
Tsp45I GTSAC 1 cut(s) 1022
TspDTI ATGAA 3 cut(s) 90, 422, 596
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 199, 1107
XceI RCATGY 3 cut(s) 700, 713, 1009
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 958
XmiI GTMKAC 1 cut(s) 423
XspI CTAG 2 cut(s) 86, 977
ZrmI AGTACT 2 cut(s) 70, 797
Zsp2I ATGCAT 3 cut(s) 711, 748, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.