Rh3BG306600

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000734
Physical Location & Seq
Forward (+)
30961151 .. 30962754
1604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG306600.1

Sequence Viewer

Length: 1278 bp
ATGGAGTCGTGGAATGTAAAGAGTCTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGATCAATAACAGGCTGGGTGATGATGAATATTTCATTCAGAAAATCATTTCGATGATCAAGAAACTGCAGCCAAGTGAGGAAGCTTTTTACGTGCTGGATTTGGGACTTGTAAGCAACCTCATGGACACATGGAAACGTAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCGCCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCACATCATCTATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAACCACTTATGACTCGGTGGGTGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCGGACGAGAGTGGGTGCAATTGGCCACTGGGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCGCTCAAACTGCAGGACTCAGAGTAGTTGGGGTTTCATTTCACGTAGGAGGTGAGTCCTACAATTTTCAAGCATACAAAACAGCCTTAGAGGCAGCTAAGGCGGTTTTCCAGGAGGCGGCTAAGCTCTCTATGCCTCCCTTGCATGTGTTGGACATTGGCGGTGGCTTCCTGTCCAAGCCATCGTCCTTTGAAGCTGCGGCAGCAGCTGTGAAAACCTCTGTGGAGACTTATTTTTCAGAGGAGGAGCGACGCAGCTTGACGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAAGACAGACAATACTGGATCAACGAAGGGTTTTATGGTTCCATGATGCTTGCGGACCCTAAAACCCTACTTGAATCGTGCATTGCTTTGAAATGCATGTCCAATAACAGTGACGGCATCGAGAAAAATCCAGTCTTGATGGTATGTGGCAAAACTACCGGCGGTGCTCGCGCTTACAGTTCGACTGTGTTTGGTCCGACGTGTGATTCGGCTGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTTGGCGCGTAGCAGCCACTTCCATGGTTTTGGCTCCGCCAAGATCACCTATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

425

Amino Acids

46.36

Weight (kDa)

5.72

Isoelectric Point (pI)

47.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 50 - 402 2.5e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 57 - 290 2.9e-66 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 2 cut(s) 568, 581
AccII CGCG 2 cut(s) 1092, 1222
AccIII TCCGGA 2 cut(s) 340, 499
AclWI GGATC 4 cut(s) 351, 445, 478, 947
AcoI YGGCCR 1 cut(s) 521
AcuI CTGAAG 2 cut(s) 420, 573
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 208, 694
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 29, 282, 446, 647, 770, 995, 1012
AjiI CACGTC 1 cut(s) 1122
AjnI CCWGG 2 cut(s) 687, 853
Alw21I GWGCWC 3 cut(s) 46, 547, 1090
Alw26I GTCTC 3 cut(s) 567, 797, 866
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 4 cut(s) 351, 445, 478, 947
AlwNI CAGNNNCTG 1 cut(s) 785
Aor13HI TCCGGA 2 cut(s) 340, 499
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 8 cut(s) 127, 395, 671, 773, 779, 782, 831, 1227
ArsI GACNNNNNNTTYG 2 cut(s) 1111, 1143
AspLEI GCGC 2 cut(s) 1094, 1222
AspS9I GGNCC 3 cut(s) 211, 976, 1115
AsuHPI GGTGA 8 cut(s) 89, 449, 641, 853, 883, 1163, 1186, 1252
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 3 cut(s) 211, 976, 1115
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 930
Bbv12I GWGCWC 3 cut(s) 46, 547, 1090
BbvI GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BccI CCATC 2 cut(s) 766, 1054
BceAI ACGGC 2 cut(s) 212, 1051
BciT130I CCWGG 2 cut(s) 689, 855
BclI TGATCA 2 cut(s) 60, 114
BcoDI GTCTC 3 cut(s) 567, 797, 866
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 2 cut(s) 125, 588
BglI GCCNNNNNGGC 2 cut(s) 269, 668
BlpI GCTNAGC 1 cut(s) 699
Bme1390I CCNGG 2 cut(s) 689, 855
Bme18I GGWCC 3 cut(s) 211, 976, 1115
BmgBI CACGTC 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 211, 976, 1115
BmiI GGNNCC 5 cut(s) 464, 532, 961, 978, 1249
BmrFI CCNGG 2 cut(s) 689, 855
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 3 cut(s) 498, 957, 1047
BmtI GCTAGC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 930
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 151, 622
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 264, 1237
BsaWI WCCGGW 2 cut(s) 340, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 694
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
Bse3DI GCAATG 1 cut(s) 1002
Bse8I GATNNNNATC 1 cut(s) 488
BseAI TCCGGA 2 cut(s) 340, 499
BseBI CCWGG 2 cut(s) 689, 855
BseDI CCNNGG 2 cut(s) 264, 1237
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 208, 694
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 297, 610
BseNI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BseRI GAGGAG 4 cut(s) 245, 560, 833, 836
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BseYI CCCAGC 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 1092, 1222
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 3 cut(s) 46, 547, 1090
BsiSI CCGG 3 cut(s) 341, 500, 1080
BslFI GGGAC 2 cut(s) 177, 285
BslI CCNNNNNNNGG 2 cut(s) 208, 694
BsmAI GTCTC 3 cut(s) 567, 797, 866
BsmFI GGGAC 2 cut(s) 177, 285
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 866
Bsp1286I GDGCHC 3 cut(s) 46, 547, 1090
Bsp13I TCCGGA 2 cut(s) 340, 499
Bsp143I GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 1 cut(s) 1237
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 2 cut(s) 298, 609
BspEI TCCGGA 2 cut(s) 340, 499
BspFNI CGCG 2 cut(s) 1092, 1222
BspLI GGNNCC 5 cut(s) 464, 532, 961, 978, 1249
BspMAI CTGCAG 2 cut(s) 129, 592
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 4 cut(s) 351, 445, 478, 947
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 866
BsrBI CCGCTC 2 cut(s) 568, 581
BsrDI GCAATG 1 cut(s) 1002
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 2 cut(s) 264, 1237
BssMI GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
BssT1I CCWWGG 2 cut(s) 264, 1237
Bst2UI CCWGG 2 cut(s) 689, 855
Bst4CI ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
BstBAI YACGTR 2 cut(s) 151, 622
BstC8I GCNNGC 3 cut(s) 376, 972, 1090
BstDEI CTNAG 5 cut(s) 306, 596, 664, 675, 699
BstDSI CCRYGG 1 cut(s) 1237
BstEII GGTNACC 1 cut(s) 1151
BstFNI CGCG 2 cut(s) 1092, 1222
BstHHI GCGC 2 cut(s) 1094, 1222
BstKTI GATC 8 cut(s) 52, 63, 117, 346, 453, 486, 942, 1260
BstMAI GTCTC 3 cut(s) 567, 797, 866
BstMBI GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
BstNI CCWGG 2 cut(s) 689, 855
BstNSI RCATGY 2 cut(s) 725, 1021
BstPI GGTNACC 1 cut(s) 1151
BstSCI CCNGG 2 cut(s) 687, 853
BstSFI CTRYAG 2 cut(s) 125, 588
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 2 cut(s) 1092, 1222
BstV1I GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 2 cut(s) 1238, 1244
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 1237
BtrI CACGTC 1 cut(s) 1122
BtsIMutI CAGTG 2 cut(s) 524, 1036
Cac8I GCNNGC 3 cut(s) 376, 972, 1090
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 2 cut(s) 1094, 1222
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 3 cut(s) 211, 976, 1115
CseI GACGC 1 cut(s) 837
Csp6I GTAC 1 cut(s) 391
CviAII CATG 7 cut(s) 181, 189, 722, 964, 1018, 1201, 1238
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 5 cut(s) 306, 596, 664, 675, 699
DpnI GATC 8 cut(s) 51, 62, 116, 345, 452, 485, 941, 1259
DpnII GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
EaeI YGGCCR 1 cut(s) 521
EciI GGCGGA 1 cut(s) 1240
Eco130I CCWWGG 2 cut(s) 264, 1237
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 3 cut(s) 211, 976, 1115
Eco57I CTGAAG 2 cut(s) 420, 573
Eco91I GGTNACC 1 cut(s) 1151
EcoO65I GGTNACC 1 cut(s) 1151
EcoRII CCWGG 2 cut(s) 687, 853
EcoT14I CCWWGG 2 cut(s) 264, 1237
EcoT22I ATGCAT 1 cut(s) 1019
ErhI CCWWGG 2 cut(s) 264, 1237
FaeI CATG 7 cut(s) 184, 192, 725, 967, 1021, 1204, 1241
FaqI GGGAC 2 cut(s) 177, 285
FatI CATG 7 cut(s) 180, 188, 721, 963, 1017, 1200, 1237
FbaI TGATCA 2 cut(s) 60, 114
FspBI CTAG 1 cut(s) 375
GlaI GCGC 2 cut(s) 1093, 1221
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 1190
HaeIII GGCC 1 cut(s) 523
HapII CCGG 3 cut(s) 341, 500, 1080
HgaI GACGC 1 cut(s) 837
HhaI GCGC 2 cut(s) 1094, 1222
Hin1II CATG 7 cut(s) 184, 192, 725, 967, 1021, 1204, 1241
Hin6I GCGC 2 cut(s) 1092, 1220
HinP1I GCGC 2 cut(s) 1092, 1220
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 9 cut(s) 5, 22, 250, 314, 428, 594, 632, 995, 1127
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 3 cut(s) 341, 500, 1080
HphI GGTGA 8 cut(s) 89, 449, 641, 853, 883, 1163, 1186, 1252
Hpy166II GTNNAC 2 cut(s) 44, 412
Hpy188I TCNGA 7 cut(s) 99, 307, 332, 455, 599, 817, 1119
Hpy188III TCNNGA 8 cut(s) 26, 58, 118, 341, 500, 904, 1042, 1057
Hpy8I GTNNAC 2 cut(s) 44, 412
Hpy99I CGWCG 2 cut(s) 831, 1123
HpyAV CCTTC 2 cut(s) 212, 941
HpyCH4III ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
HpyCH4IV ACGT 5 cut(s) 150, 196, 621, 1121, 1214
HpyF3I CTNAG 5 cut(s) 306, 596, 664, 675, 699
HpySE526I ACGT 5 cut(s) 150, 196, 621, 1121, 1214
Hsp92II CATG 7 cut(s) 184, 192, 725, 967, 1021, 1204, 1241
HspAI GCGC 2 cut(s) 1092, 1220
Kpn2I TCCGGA 2 cut(s) 340, 499
Ksp22I TGATCA 2 cut(s) 60, 114
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
LmnI GCTCC 4 cut(s) 502, 573, 823, 1253
Lsp1109I GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
LweI GCATC 3 cut(s) 498, 957, 1047
MaeI CTAG 1 cut(s) 375
MaeII ACGT 5 cut(s) 150, 196, 621, 1121, 1214
MaeIII GTNAC 5 cut(s) 197, 889, 1031, 1151, 1158
MalI GATC 8 cut(s) 51, 62, 116, 345, 452, 485, 941, 1259
MbiI CCGCTC 2 cut(s) 568, 581
MboI GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
MboII GAAGA 2 cut(s) 566, 935
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 3 cut(s) 46, 547, 1090
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 4 cut(s) 517, 640, 1180, 1273
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 6 cut(s) 14, 31, 323, 422, 588, 641
MmeI TCCRAC 4 cut(s) 238, 708, 1125, 1142
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 1019
MroI TCCGGA 2 cut(s) 340, 499
MscI TGGCCA 1 cut(s) 523
MseI TTAA 2 cut(s) 411, 1276
MslI CAYNNNNRTG 2 cut(s) 110, 1236
Msp20I TGGCCA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 3 cut(s) 341, 500, 1080
MspR9I CCNGG 2 cut(s) 689, 855
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 2 cut(s) 689, 855
MvnI CGCG 2 cut(s) 1092, 1222
NcoI CCATGG 1 cut(s) 1237
NdeII GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 7 cut(s) 184, 192, 725, 967, 1021, 1204, 1241
NlaIV GGNNCC 5 cut(s) 464, 532, 961, 978, 1249
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 889, 1031, 1151
NsiI ATGCAT 1 cut(s) 1019
NspI RCATGY 2 cut(s) 725, 1021
PfeI GAWTC 3 cut(s) 250, 995, 1127
PfoI TCCNGGA 1 cut(s) 687
PleI GAGTC 6 cut(s) 13, 30, 322, 422, 588, 640
PpsI GAGTC 6 cut(s) 13, 30, 322, 422, 588, 640
Ppu21I YACGTR 2 cut(s) 151, 622
Psp6I CCWGG 2 cut(s) 687, 853
PspEI GGTNACC 1 cut(s) 1151
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 2 cut(s) 687, 853
PspN4I GGNNCC 5 cut(s) 464, 532, 961, 978, 1249
PspPI GGNCC 3 cut(s) 211, 976, 1115
PstI CTGCAG 2 cut(s) 129, 592
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 450
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 110, 1236
SaqAI TTAA 2 cut(s) 411, 1276
Sau3AI GATC 8 cut(s) 49, 60, 114, 343, 450, 483, 939, 1257
Sau96I GGNCC 3 cut(s) 211, 976, 1115
SchI GAGTC 6 cut(s) 14, 31, 323, 422, 588, 641
ScrFI CCNGG 2 cut(s) 689, 855
SduI GDGCHC 3 cut(s) 46, 547, 1090
SfaNI GCATC 3 cut(s) 498, 957, 1047
SfcI CTRYAG 2 cut(s) 125, 588
SinI GGWCC 3 cut(s) 211, 976, 1115
SmiMI CAYNNNNRTG 2 cut(s) 110, 1236
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 4 cut(s) 517, 640, 1180, 1273
SspI AATATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 687, 853
StyI CCWWGG 2 cut(s) 264, 1237
TaaI ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
TaiI ACGT 5 cut(s) 153, 199, 624, 1124, 1217
TaqI TCGA 4 cut(s) 110, 288, 1041, 1103
TasI AATT 4 cut(s) 517, 640, 1180, 1273
TauI GCSGC 4 cut(s) 263, 581, 698, 779
TfiI GAWTC 3 cut(s) 250, 995, 1127
Tru1I TTAA 2 cut(s) 411, 1276
Tru9I TTAA 2 cut(s) 411, 1276
TscAI CASTG 2 cut(s) 531, 1036
TseFI GTSAC 3 cut(s) 889, 1031, 1151
TseI GCWGC 8 cut(s) 127, 395, 671, 773, 779, 782, 831, 1227
Tsp45I GTSAC 3 cut(s) 889, 1031, 1151
TspDTI ATGAA 3 cut(s) 82, 99, 603
TspRI CASTG 2 cut(s) 531, 1036
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 211, 976, 1115
XceI RCATGY 2 cut(s) 725, 1021
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.