Rmu_sc0001863.1_g000009

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001863.1
OG0000734
Physical Location & Seq
Reverse (-)
17024 .. 19994
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001863.1_g000009.1.cds

Sequence Viewer

Length: 1458 bp
atgctcccgggcttggctcacgggctgggccgggtttcattctcatcgctcataccttaccctattttaaaaagggtatccggaaactttcaacgtcaactctcattctcacatgcaacgccaagaaactacaagtttctctttttctcttctttcccctactacatcttcttcactccaaaattttggaccagcatggagtccttgcctgaagctctaccaagtgcatcagatcagtttgtgagcaacaacgggctgagtactgatgaatatttccttgagaaaattatttcgacgatcaagaagcagcaaaatgaggaagcattttacgtgctggatttagatgttgtcatcaacctcatggaaacctggaaacgtaaccttccgatggtccaacccttttacgctgttaaatgcaatccacacccggatctcctcgccagcttggtggctcatggctcaagtttcgattgtgcaagtcaatctgagattgagtccattttggctcttggagtttctccggatcgcataatctatgcaaatccctgtaaagctagctctcacatcaagtacgctgccaaagttggtgttaacctaatgactttcgactcggtatatgaagttgaaaagatacaaaaatgccaccccaaatgttctttacttatccgcattaaagctccggacgaaagtgggtgcatgtggactacgagttccaagttcggtgctctccctgaagaagtgtcctcgcttcttcaagccgctcaaactgtaggactcgaagttactggggtgtcatttcacatagggagtaagtcccacaattctcaagcgtacaaaacagctatagaggcggctaaggcggtttttcaggaggcagccaggctctgcatggctcccatgtatgtgttgaacattggcggcggctttgtgtctgagccatcattctttgaagctgcagcatcagccgtgaaaaccgctgtggagacatatttttcagaggaagagcgacgcagcttaacagtgatagccgagccaggtcggttttttgtagagacagctttcacgcttgtcaccaacatcatcgggaagcgtgtgagaggggaggtcagacactactggatcaacgaagggttttatgggtccatgatgcgtgcggaccctagaaccctacttgaatcgtgcattgctctgaaatgcatgtccaataacagtgatggcaacgagaagaatccagtcataatggtacctggcaaaagaactggtagtgctcgcacttatatttcaactgtgtttggtccaacgtgtgatccggttgacaaggtgttggggggtgagcagctaccagaacttgaggtgaatgattggctggtgtttcagaatatgggtgcttatacgtcggcatgtagcaacaactttaatggttttggctcaagcaagatcacctaccttactaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

485

Amino Acids

53.69

Weight (kDa)

6.53

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1243
AccB1I GGYRCC 1 cut(s) 1243
AccBSI CCGCTC 1 cut(s) 761
AccIII TCCGGA 3 cut(s) 80, 520, 679
AciI CCGC 8 cut(s) 667, 759, 851, 860, 918, 921, 975, 1154
AclWI GGATC 4 cut(s) 438, 531, 1127, 1301
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 2 cut(s) 231, 753
AfaI GTAC 4 cut(s) 262, 572, 833, 1245
AfiI CCNNNNNNNGG 2 cut(s) 13, 388
AflIII ACRYGT 1 cut(s) 1301
AgsI TTSAA 7 cut(s) 92, 626, 755, 910, 950, 1175, 1284
AjnI CCWGG 4 cut(s) 368, 878, 1033, 1246
AloI GAACNNNNNNTCC 2 cut(s) 694, 726
Alw21I GWGCWC 2 cut(s) 727, 1270
Alw26I GTCTC 2 cut(s) 977, 1046
AlwI GGATC 4 cut(s) 438, 531, 1127, 1301
AlwNI CAGNNNCTG 1 cut(s) 885
Ama87I CYCGRG 1 cut(s) 7
Aor13HI TCCGGA 3 cut(s) 80, 520, 679
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 7 cut(s) 307, 575, 875, 953, 956, 1011, 1336
ApoI RAATTY 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 1243
AspS9I GGNCC 6 cut(s) 28, 189, 391, 1140, 1156, 1295
AsuC2I CCSGG 4 cut(s) 8, 9, 32, 428
AsuHPI GGTGA 4 cut(s) 1063, 1343, 1366, 1432
AsuNHI GCTAGC 1 cut(s) 554
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 5 cut(s) 189, 391, 1140, 1156, 1295
BanI GGYRCC 1 cut(s) 1243
Bbv12I GWGCWC 2 cut(s) 727, 1270
BbvI GCAGC 7 cut(s) 319, 562, 887, 940, 968, 1023, 1348
BccI CCATC 3 cut(s) 382, 946, 1208
BceAI ACGGC 1 cut(s) 950
BciT130I CCWGG 4 cut(s) 370, 880, 1035, 1248
BciVI GTATCC 1 cut(s) 88
BcnI CCSGG 4 cut(s) 8, 9, 32, 428
BcoDI GTCTC 2 cut(s) 977, 1046
BfaI CTAG 2 cut(s) 555, 1161
BfmI CTRYAG 3 cut(s) 768, 843, 954
BfuI GTATCC 1 cut(s) 88
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 8 cut(s) 8, 9, 32, 370, 428, 880, 1035, 1248
Bme18I GGWCC 5 cut(s) 189, 391, 1140, 1156, 1295
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 6 cut(s) 28, 189, 391, 1140, 1156, 1295
BmiI GGNNCC 4 cut(s) 894, 1141, 1158, 1245
BmrFI CCNGG 8 cut(s) 8, 9, 32, 370, 428, 880, 1035, 1248
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 3 cut(s) 236, 968, 1137
BmtI GCTAGC 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 795
Bpu10I CCTNAGC 1 cut(s) 855
BpuEI CTTGAG 5 cut(s) 299, 445, 810, 1370, 1414
BpuMI CCSGG 4 cut(s) 8, 9, 32, 428
BsaAI YACGTR 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 4 cut(s) 80, 520, 679, 1309
Bsc4I CCNNNNNNNGG 2 cut(s) 13, 388
Bse1I ACTGG 4 cut(s) 790, 1121, 1232, 1264
Bse3DI GCAATG 1 cut(s) 1182
BseAI TCCGGA 3 cut(s) 80, 520, 679
BseBI CCWGG 4 cut(s) 370, 880, 1035, 1248
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 13, 388
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 3 cut(s) 248, 477, 924
BseNI ACTGG 4 cut(s) 790, 1121, 1232, 1264
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 7 cut(s) 319, 562, 887, 940, 968, 1023, 1348
BseYI CCCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 1243
BsiHKAI GWGCWC 2 cut(s) 727, 1270
BsiHKCI CYCGRG 1 cut(s) 7
BsiSI CCGG 7 cut(s) 8, 31, 81, 428, 521, 680, 1310
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 2 cut(s) 13, 388
BsmAI GTCTC 2 cut(s) 977, 1046
BsmFI GGGAC 1 cut(s) 799
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 7
Bsp1286I GDGCHC 2 cut(s) 727, 1270
Bsp13I TCCGGA 3 cut(s) 80, 520, 679
Bsp143I GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
BspACI CCGC 8 cut(s) 667, 759, 851, 860, 918, 921, 975, 1154
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 3 cut(s) 249, 478, 925
BspEI TCCGGA 3 cut(s) 80, 520, 679
BspLI GGNNCC 4 cut(s) 894, 1141, 1158, 1245
BspMAI CTGCAG 1 cut(s) 958
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 4 cut(s) 438, 531, 1127, 1301
BspQI GCTCTTC 1 cut(s) 996
BspT107I GGYRCC 1 cut(s) 1243
BsrBI CCGCTC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 1182
BsrI ACTGG 4 cut(s) 790, 1121, 1232, 1264
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
Bst2UI CCWGG 4 cut(s) 370, 880, 1035, 1248
Bst4CI ACNGT 4 cut(s) 769, 1021, 1211, 1288
Bst6I CTCTTC 2 cut(s) 154, 996
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 4 cut(s) 442, 556, 1152, 1270
BstDEI CTNAG 4 cut(s) 257, 486, 855, 933
BstKTI GATC 7 cut(s) 235, 300, 433, 526, 1122, 1309, 1440
BstMAI GTCTC 2 cut(s) 977, 1046
BstMBI GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
BstMWI GCNNNNNNNGC 3 cut(s) 848, 857, 962
BstNI CCWGG 4 cut(s) 370, 880, 1035, 1248
BstNSI RCATGY 4 cut(s) 116, 700, 1201, 1404
BstSCI CCNGG 8 cut(s) 6, 7, 30, 368, 426, 878, 1033, 1246
BstSFI CTRYAG 3 cut(s) 768, 843, 954
BstV1I GCAGC 7 cut(s) 319, 562, 887, 940, 968, 1023, 1348
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 2 cut(s) 186, 448
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 30
BtsIMutI CAGTG 2 cut(s) 1026, 1216
Cac8I GCNNGC 4 cut(s) 442, 556, 1152, 1270
CaiI CAGNNNCTG 1 cut(s) 885
Cfr13I GGNCC 6 cut(s) 28, 189, 391, 1140, 1156, 1295
Cfr9I CCCGGG 1 cut(s) 7
CseI GACGC 1 cut(s) 1017
Csp6I GTAC 4 cut(s) 261, 571, 832, 1244
CviQI GTAC 4 cut(s) 261, 571, 832, 1244
DdeI CTNAG 4 cut(s) 257, 486, 855, 933
DpnI GATC 7 cut(s) 234, 299, 432, 525, 1121, 1308, 1439
DpnII GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
DraI TTTAAA 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 154, 996
EarI CTCTTC 2 cut(s) 154, 996
Eco47I GGWCC 5 cut(s) 189, 391, 1140, 1156, 1295
Eco57I CTGAAG 2 cut(s) 231, 753
Eco88I CYCGRG 1 cut(s) 7
EcoRII CCWGG 4 cut(s) 368, 878, 1033, 1246
EcoT22I ATGCAT 1 cut(s) 1199
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 1 cut(s) 799
FspBI CTAG 2 cut(s) 555, 1161
GsaI CCCAGC 1 cut(s) 29
HaeIII GGCC 1 cut(s) 30
HapII CCGG 7 cut(s) 8, 31, 81, 428, 521, 680, 1310
HgaI GACGC 1 cut(s) 1017
HincII GTYRAC 3 cut(s) 98, 592, 1315
HindII GTYRAC 3 cut(s) 98, 592, 1315
HinfI GANTC 6 cut(s) 200, 494, 608, 774, 1175, 1228
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 7 cut(s) 8, 31, 81, 428, 521, 680, 1310
HphI GGTGA 4 cut(s) 1063, 1343, 1366, 1432
Hpy166II GTNNAC 4 cut(s) 98, 592, 702, 1315
Hpy188I TCNGA 8 cut(s) 232, 387, 487, 934, 997, 1109, 1191, 1377
Hpy188III TCNNGA 6 cut(s) 81, 301, 521, 680, 869, 1084
Hpy8I GTNNAC 4 cut(s) 98, 592, 702, 1315
Hpy99I CGWCG 3 cut(s) 298, 1011, 1399
HpyAV CCTTC 2 cut(s) 392, 1121
HpyCH4III ACNGT 4 cut(s) 769, 1021, 1211, 1288
HpyCH4IV ACGT 5 cut(s) 94, 330, 376, 1301, 1394
HpyF10VI GCNNNNNNNGC 3 cut(s) 848, 857, 962
HpyF3I CTNAG 4 cut(s) 257, 486, 855, 933
HpySE526I ACGT 5 cut(s) 94, 330, 376, 1301, 1394
Kpn2I TCCGGA 3 cut(s) 80, 520, 679
KpnI GGTACC 1 cut(s) 1247
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
LguI GCTCTTC 1 cut(s) 996
LmnI GCTCC 3 cut(s) 9, 682, 898
Lsp1109I GCAGC 7 cut(s) 319, 562, 887, 940, 968, 1023, 1348
LweI GCATC 3 cut(s) 236, 968, 1137
MaeI CTAG 2 cut(s) 555, 1161
MaeII ACGT 5 cut(s) 94, 330, 376, 1301, 1394
MaeIII GTNAC 3 cut(s) 377, 781, 1069
MalI GATC 7 cut(s) 234, 299, 432, 525, 1121, 1308, 1439
MbiI CCGCTC 1 cut(s) 761
MboI GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
MboII GAAGA 7 cut(s) 141, 160, 163, 743, 746, 1013, 1237
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 727, 1270
MluCI AATT 3 cut(s) 182, 285, 820
MlyI GAGTC 4 cut(s) 209, 503, 602, 768
MmeI TCCRAC 2 cut(s) 418, 1322
Mph1103I ATGCAT 1 cut(s) 1199
MroI TCCGGA 3 cut(s) 80, 520, 679
MseI TTAA 6 cut(s) 68, 411, 591, 672, 1016, 1416
MslI CAYNNNNRTG 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 7 cut(s) 8, 31, 81, 428, 521, 680, 1310
MspR9I CCNGG 8 cut(s) 8, 9, 32, 370, 428, 880, 1035, 1248
MvaI CCWGG 4 cut(s) 370, 880, 1035, 1248
MwoI GCNNNNNNNGC 3 cut(s) 848, 857, 962
NciI CCSGG 4 cut(s) 8, 9, 32, 428
NdeII GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
NheI GCTAGC 1 cut(s) 554
NlaIV GGNNCC 4 cut(s) 894, 1141, 1158, 1245
NmeAIII GCCGAG 1 cut(s) 1054
NmuCI GTSAC 1 cut(s) 1069
NsiI ATGCAT 1 cut(s) 1199
NspI RCATGY 4 cut(s) 116, 700, 1201, 1404
PciSI GCTCTTC 1 cut(s) 996
PfeI GAWTC 2 cut(s) 1175, 1228
PleI GAGTC 4 cut(s) 208, 502, 602, 768
PpsI GAGTC 4 cut(s) 208, 502, 602, 768
Ppu21I YACGTR 1 cut(s) 331
Psp6I CCWGG 4 cut(s) 368, 878, 1033, 1246
PspFI CCCAGC 1 cut(s) 25
PspGI CCWGG 4 cut(s) 368, 878, 1033, 1246
PspN4I GGNNCC 4 cut(s) 894, 1141, 1158, 1245
PspPI GGNCC 6 cut(s) 28, 189, 391, 1140, 1156, 1295
PstI CTGCAG 1 cut(s) 958
PstNI CAGNNNCTG 1 cut(s) 885
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 4 cut(s) 262, 572, 833, 1245
RsaNI GTAC 4 cut(s) 261, 571, 832, 1244
RseI CAYNNNNRTG 1 cut(s) 902
SapI GCTCTTC 1 cut(s) 996
SaqAI TTAA 6 cut(s) 68, 411, 591, 672, 1016, 1416
Sau3AI GATC 7 cut(s) 232, 297, 430, 523, 1119, 1306, 1437
Sau96I GGNCC 6 cut(s) 28, 189, 391, 1140, 1156, 1295
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 4 cut(s) 209, 503, 602, 768
ScrFI CCNGG 8 cut(s) 8, 9, 32, 370, 428, 880, 1035, 1248
SduI GDGCHC 2 cut(s) 727, 1270
SfaNI GCATC 3 cut(s) 236, 968, 1137
SfcI CTRYAG 3 cut(s) 768, 843, 954
SinI GGWCC 5 cut(s) 189, 391, 1140, 1156, 1295
SmaI CCCGGG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 902
SmlI CTYRAG 5 cut(s) 278, 460, 825, 1349, 1429
SmoI CTYRAG 5 cut(s) 278, 460, 825, 1349, 1429
Sse9I AATT 3 cut(s) 182, 285, 820
SsiI CCGC 8 cut(s) 667, 759, 851, 860, 918, 921, 975, 1154
SspI AATATT 1 cut(s) 272
SspMI CTAG 2 cut(s) 555, 1161
StyD4I CCNGG 8 cut(s) 6, 7, 30, 368, 426, 878, 1033, 1246
TaaI ACNGT 4 cut(s) 769, 1021, 1211, 1288
TaiI ACGT 5 cut(s) 97, 333, 379, 1304, 1397
TaqI TCGA 4 cut(s) 293, 468, 606, 777
TasI AATT 3 cut(s) 182, 285, 820
TatI WGTACW 1 cut(s) 260
TauI GCSGC 4 cut(s) 761, 854, 921, 924
TfiI GAWTC 2 cut(s) 1175, 1228
Tru1I TTAA 6 cut(s) 68, 411, 591, 672, 1016, 1416
Tru9I TTAA 6 cut(s) 68, 411, 591, 672, 1016, 1416
TscAI CASTG 2 cut(s) 1026, 1216
TseFI GTSAC 1 cut(s) 1069
TseI GCWGC 7 cut(s) 307, 575, 875, 953, 956, 1011, 1336
Tsp45I GTSAC 1 cut(s) 1069
TspDTI ATGAA 3 cut(s) 27, 282, 633
TspMI CCCGGG 1 cut(s) 7
TspRI CASTG 2 cut(s) 1026, 1216
VpaK11BI GGWCC 5 cut(s) 189, 391, 1140, 1156, 1295
XapI RAATTY 1 cut(s) 182
XceI RCATGY 4 cut(s) 116, 700, 1201, 1404
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmaI CCCGGG 1 cut(s) 7
XspI CTAG 2 cut(s) 555, 1161
ZrmI AGTACT 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.