Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000734

Physical Location & Seq

Genomic Coordinates Forward (+)

7521529 .. 7521975

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG101000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACTCACCTATACAAGAGGACCGTGCTTTCCCTGAAGAAGTGTCCCCGCTTCTCCAAGCCGCTCAAACTGCAGGACTCAAAGTTGCTGGGGTGTCATTTCACATGTTGAGTAAGTCCCACAATTCTCAAGCATACAAAACAGCCATAGAGGCAGCTAAGGCGGTTTTTCAGGAGGGGGCCAGGCTCTGCATGCCTCGCATGCATGTGTTGAACATTGGAGGTGGCTTCGTGTCCGAACCATCTTTATTTGAAGCTGCGGCGTCAGCCGTGAAAATCGCTGTGGAGACGTATTTTTCAAAGGAAGAGCTAAGCAGCTTAACGGTGATAGCCGACCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTTTCACCAACATTATCGGGAAGCGCAAGAGAGGGGAGCTCAGAAAATACTGGATCAACGAAGGGTTTTATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130

Pfam Domains

Protein Families

Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

6.84

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Orn_Arg_deC_N	PF02784	13 - 118	2.1e-20	Pyridoxal-dependent decarboxylase, pyridoxal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000734)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24730 FvH4_4g24750 FvH4_4g24750 FvH4_4g24751 FvH4_4g27890 FvH4_4g27890
malus_domestica	MD05G1034000.v1.1 MD05G1036600.v1.1
prunus_persica	Prupe.8G044900_v2.0.a1 Prupe.8G047700_v2.0.a1 Prupe.8G048000_v2.0.a1 Prupe.8G048200_v2.0.a1
pyrus_communis	pycom05g02700
rosa_chinensis	RchiOBHm_Chr3g0485801 RchiOBHm_Chr3g0485811 RchiOBHm_Chr3g0485831 RchiOBHm_Chr3g0485901 RchiOBHm_Chr3g0490321 RchiOBHm_Chr3g0490331 RchiOBHm_Chr4g0431831 RchiOBHm_Chr7g0227121
rosa_laevigata	RLG00000001667 RLG00000004654 RLG00000006885 RLG00000023124
rosa_multiflora	Rmu_co8388845.1_g000001 Rmu_sc0001459.1_g000007 Rmu_sc0001527.1_g000018 Rmu_sc0001863.1_g000009 Rmu_sc0002489.1_g000031 Rmu_sc0004876.1_g000007 Rmu_sc0004876.1_g000010 Rmu_sc0012870.1_g000009 Rmu_sc0028785.1_g000001 Rmu_ssc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00232310 Rroxscaffold_6G00393560 Rroxscaffold_6G00393570 Rroxscaffold_6G00396220 Rroxscaffold_6G00396250
rosa_rugosa	Rorug03G0221900 Rorug04G0252500 Rorug07G0240700
rosa_samantha	Rh3AG270800 Rh3AG271000 Rh3AG292400 Rh3AG292500 Rh3BG306600 Rh3CG305100 Rh3CG305300 Rh3CG326600 Rh3CG326700 Rh3DG301100 Rh3DG301300 Rh3DG325700 Rh3DG325800 Rh4AG309400 Rh4BG316700 Rh4CG332000 Rh4DG311600 Rh7AG099200 Rh7AG390600 Rh7BG101000 Rh7BG101100 Rh7BG375500 Rh7CG409600 Rh7DG387900
rosa_wichuraiana	Rw0G002980 Rw3G024130 Rw3G025910 Rw4G026890 Rw7G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	65
AciI	CCGC	5 cut(s)	50, 63, 164, 260, 360
AclWI	GGATC	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	214, 254, 300
AjnI	CCWGG	2 cut(s)	182, 337
AluBI	AGCT	5 cut(s)	158, 257, 310, 318, 409
AluI	AGCT	5 cut(s)	158, 257, 310, 318, 409
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	2 cut(s)	281, 350
AlwI	GGATC	1 cut(s)	431
AlwNI	CAGNNNCTG	1 cut(s)	189
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	3 cut(s)	155, 257, 315
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	22, 180
AsuHPI	GGTGA	2 cut(s)	337, 367
AvaII	GGWCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	167, 244, 327
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	184, 339
BcoDI	GTCTC	2 cut(s)	281, 350
BfmI	CTRYAG	1 cut(s)	72
BglI	GCCNNNNNGGC	1 cut(s)	152
BisI	GCNGC	5 cut(s)	63, 156, 258, 261, 316
BlpI	GCTNAGC	1 cut(s)	311
BlsI	GCNGC	5 cut(s)	64, 157, 259, 262, 317
Bme1390I	CCNGG	2 cut(s)	184, 339
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	2 cut(s)	22, 180
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	2 cut(s)	184, 339
BoxI	GACNNNNGTC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	393, 425
Bpu10I	CCTNAGC	1 cut(s)	159
Bpu1102I	GCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	184, 339
BseDI	CCNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	167, 244, 327
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	411
BslFI	GGGAC	2 cut(s)	31, 103
BsmAI	GTCTC	2 cut(s)	281, 350
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	2 cut(s)	31, 103
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	350
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	423
Bsp1720I	GCTNAGC	1 cut(s)	311
BspACI	CCGC	5 cut(s)	50, 63, 164, 260, 360
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	431
BspQI	GCTCTTC	1 cut(s)	300
BspTNI	GGTCTC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	423
BssNI	GRCGYC	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	184, 339
Bst4CI	ACNGT	2 cut(s)	26, 325
Bst6I	CTCTTC	1 cut(s)	300
BstACI	GRCGYC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	444
BstC8I	GCNNGC	2 cut(s)	194, 203
BstDEI	CTNAG	3 cut(s)	159, 311, 410
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	1 cut(s)	426
BstMAI	GTCTC	2 cut(s)	281, 350
BstMBI	GATC	1 cut(s)	423
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 152, 161, 193, 198, 202, 266, 359
BstNI	CCWGG	2 cut(s)	184, 339
BstNSI	RCATGY	4 cut(s)	109, 196, 205, 209
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	182, 337
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	167, 244, 327
BsuRI	GGCC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	194, 203
CaiI	CAGNNNCTG	1 cut(s)	189
CfoI	GCGC	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	22, 180
CseI	GACGC	1 cut(s)	252
CviAII	CATG	4 cut(s)	106, 193, 202, 206
DdeI	CTNAG	3 cut(s)	159, 311, 410
DpnI	GATC	1 cut(s)	425
DpnII	GATC	1 cut(s)	423
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	409
EcoRII	CCWGG	2 cut(s)	182, 337
EcoT22I	ATGCAT	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	4 cut(s)	109, 196, 205, 209
FaiI	YATR	8 cut(s)	14, 107, 136, 149, 194, 203, 207, 441
FaqI	GGGAC	2 cut(s)	31, 103
FatI	CATG	4 cut(s)	105, 192, 201, 205
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	5 cut(s)	63, 156, 258, 261, 316
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	5 cut(s)	63, 156, 258, 261, 316
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	5 cut(s)	63, 156, 258, 261, 316
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	182
HgaI	GACGC	1 cut(s)	252
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	4 cut(s)	109, 196, 205, 209
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	5, 78
HphI	GGTGA	2 cut(s)	337, 367
Hpy188I	TCNGA	2 cut(s)	238, 413
Hpy188III	TCNNGA	2 cut(s)	173, 388
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	2 cut(s)	26, 325
HpyCH4IV	ACGT	2 cut(s)	290, 443
HpyCH4V	TGCA	4 cut(s)	74, 192, 205, 353
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 152, 161, 193, 198, 202, 266, 359
HpyF3I	CTNAG	3 cut(s)	159, 311, 410
HpySE526I	ACGT	2 cut(s)	290, 443
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	4 cut(s)	109, 196, 205, 209
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	1 cut(s)	423
LguI	GCTCTTC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	48, 60, 75, 158, 169, 196, 324, 351, 406
Lsp1109I	GCAGC	3 cut(s)	167, 244, 327
MaeII	ACGT	2 cut(s)	290, 443
MalI	GATC	1 cut(s)	425
MbiI	CCGCTC	1 cut(s)	65
MboI	GATC	1 cut(s)	423
MboII	GAAGA	2 cut(s)	50, 317
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	13, 145, 169, 207, 215, 395
Mph1103I	ATGCAT	1 cut(s)	207
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	2 cut(s)	184, 339
MvaI	CCWGG	2 cut(s)	184, 339
MwoI	GCNNNNNNNGC	8 cut(s)	71, 152, 161, 193, 198, 202, 266, 359
NdeII	GATC	1 cut(s)	423
NlaIII	CATG	4 cut(s)	109, 196, 205, 209
NlaIV	GGNNCC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	207
NspI	RCATGY	4 cut(s)	109, 196, 205, 209
PaeI	GCATGC	2 cut(s)	196, 205
PciI	ACATGT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	300
PkrI	GCNGC	5 cut(s)	64, 157, 259, 262, 317
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Ppu21I	YACGTR	1 cut(s)	444
PscI	ACATGT	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	182, 337
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	182, 337
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	22, 180
PstI	CTGCAG	1 cut(s)	76
PstNI	CAGNNNCTG	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	411
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	5 cut(s)	63, 156, 258, 261, 316
Sau3AI	GATC	1 cut(s)	423
Sau96I	GGNCC	2 cut(s)	22, 180
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	184, 339
SduI	GDGCHC	1 cut(s)	411
SfcI	CTRYAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SphI	GCATGC	2 cut(s)	196, 205
Sse9I	AATT	1 cut(s)	124
SsiI	CCGC	5 cut(s)	50, 63, 164, 260, 360
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	182, 337
TaaI	ACNGT	2 cut(s)	26, 325
TaiI	ACGT	2 cut(s)	293, 446
TasI	AATT	1 cut(s)	124
TauI	GCSGC	2 cut(s)	65, 263
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	3 cut(s)	155, 257, 315
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	4 cut(s)	109, 196, 205, 209
Zsp2I	ATGCAT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.