Rh3AG271000

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000734
Physical Location & Seq
Forward (+)
30879158 .. 30880751
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG271000.1

Sequence Viewer

Length: 1290 bp
ATGGAGTCGTGGAATGTAAAGAGCCTTGAAGCCCTACCAAGTGCACTAGATCAGGTCGTGACCAATAGCAGGCTGGGTGATGATGAATATTTCATTCAAAAAATCATTTCGATGATCAAGAAACTACAGCCAAGTGAGGAAGCATTTTACGTGCTGGATTTGGGTCTTGTAAGCAACCTCATGGACACATGGAAACGCAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACATCCGAATCTCCTCGCCACCTTGGTGGCTCAAGGTTCAAGTTTTGATTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCACATCATATATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAATCACTTATGACTCGGTGGGTGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCGGACGAGAGTGGGTGCAATTGGCCACTGGGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCACTCAAACTGCAGGACTCAGAGTAGCTGGGGTTTCATTTCACGTAGGAGGTGAGTCCTACAATTTTCAAGCATACAAAACAGCCTTAGAGGCAGCTAAAGCGGTTTTCCAGGAGGCGGCTAAGCTCTCTATGCCTCCCTTGCATGTGTTGGACATTGGCGGTGGCTTCGTTTCCGAGCCATCGTCCTTTGAAGCTGCGGCAGCAACCGTGAAAACCTCTGTGGAGACCTATTTTTCAGAGGAAGAGCGACGCAGCTTGACCGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGACAGACAATACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCTTGTGAACCCTAAAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTATGTGGCAAAGCTACCGGCGGTGCTCGCACTTACAGTTCGACTTTGTTTGGTCCGACGTGTGATTCAGCGGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTCAGCGTGTAGCAGCCACTTCAATGGTTTTGGCTCCGCCAAGATCACCTATATTCTAACACATGATGATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

429

Amino Acids

46.79

Weight (kDa)

5.33

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 50 - 402 2.2e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 57 - 290 2.6e-66 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 1 cut(s) 568
AccIII TCCGGA 2 cut(s) 340, 499
AclWI GGATC 4 cut(s) 351, 445, 478, 947
AcoI YGGCCR 1 cut(s) 521
AcuI CTGAAG 2 cut(s) 420, 573
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 3 cut(s) 69, 208, 694
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 8 cut(s) 29, 98, 282, 446, 647, 770, 995, 1237
AjiI CACGTC 1 cut(s) 1122
AjnI CCWGG 2 cut(s) 687, 853
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 3 cut(s) 46, 547, 1090
Alw26I GTCTC 3 cut(s) 567, 797, 866
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 4 cut(s) 351, 445, 478, 947
Aor13HI TCCGGA 2 cut(s) 340, 499
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 6 cut(s) 395, 671, 773, 779, 831, 1227
AspS9I GGNCC 3 cut(s) 211, 960, 1115
AsuHPI GGTGA 7 cut(s) 89, 449, 641, 883, 1163, 1186, 1252
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 3 cut(s) 211, 960, 1115
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 1 cut(s) 462
Bbv12I GWGCWC 3 cut(s) 46, 547, 1090
BbvI GCAGC 6 cut(s) 382, 683, 760, 791, 843, 1239
BccI CCATC 3 cut(s) 766, 1028, 1054
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 689, 855
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 567, 797, 866
BfaI CTAG 2 cut(s) 47, 375
BfmI CTRYAG 2 cut(s) 125, 588
BglI GCCNNNNNGGC 1 cut(s) 668
BisI GCNGC 8 cut(s) 396, 672, 696, 774, 777, 780, 832, 1228
BlpI GCTNAGC 1 cut(s) 699
BlsI GCNGC 8 cut(s) 397, 673, 697, 775, 778, 781, 833, 1229
Bme1390I CCNGG 2 cut(s) 689, 855
Bme18I GGWCC 3 cut(s) 211, 960, 1115
BmgBI CACGTC 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 211, 960, 1115
BmiI GGNNCC 4 cut(s) 464, 532, 961, 1249
BmrFI CCNGG 2 cut(s) 689, 855
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 3 cut(s) 498, 957, 1047
BmtI GCTAGC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 1190
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 151, 622
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 797, 866
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 2 cut(s) 340, 499
Bsc4I CCNNNNNNNGG 3 cut(s) 69, 208, 694
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
Bse3DI GCAATG 1 cut(s) 1002
Bse8I GATNNNNATC 1 cut(s) 488
BseAI TCCGGA 2 cut(s) 340, 499
BseBI CCWGG 2 cut(s) 689, 855
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 3 cut(s) 69, 208, 694
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 2 cut(s) 297, 610
BseNI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BseRI GAGGAG 2 cut(s) 245, 560
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 6 cut(s) 382, 683, 760, 791, 843, 1239
BseYI CCCAGC 2 cut(s) 73, 605
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 3 cut(s) 46, 547, 1090
BsiSI CCGG 3 cut(s) 341, 500, 1080
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 69, 208, 694
BsmAI GTCTC 3 cut(s) 567, 797, 866
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 2 cut(s) 797, 866
Bsp1286I GDGCHC 3 cut(s) 46, 547, 1090
Bsp13I TCCGGA 2 cut(s) 340, 499
Bsp143I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
Bsp1720I GCTNAGC 1 cut(s) 699
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 2 cut(s) 298, 609
BspEI TCCGGA 2 cut(s) 340, 499
BspHI TCATGA 1 cut(s) 1286
BspLI GGNNCC 4 cut(s) 464, 532, 961, 1249
BspMAI CTGCAG 1 cut(s) 592
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 4 cut(s) 351, 445, 478, 947
BspQI GCTCTTC 1 cut(s) 816
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 2 cut(s) 797, 866
BsrBI CCGCTC 1 cut(s) 568
BsrDI GCAATG 1 cut(s) 1002
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 689, 855
Bst4CI ACNGT 4 cut(s) 787, 841, 1031, 1100
Bst6I CTCTTC 1 cut(s) 816
BstBAI YACGTR 2 cut(s) 151, 622
BstC8I GCNNGC 3 cut(s) 71, 376, 1090
BstDEI CTNAG 4 cut(s) 306, 596, 664, 699
BstEII GGTNACC 1 cut(s) 1151
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 7 cut(s) 52, 117, 346, 453, 486, 942, 1260
BstMAI GTCTC 3 cut(s) 567, 797, 866
BstMBI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
BstMWI GCNNNNNNNGC 8 cut(s) 375, 668, 677, 709, 718, 779, 875, 1089
BstNI CCWGG 2 cut(s) 689, 855
BstNSI RCATGY 2 cut(s) 725, 1021
BstPI GGTNACC 1 cut(s) 1151
BstSCI CCNGG 2 cut(s) 687, 853
BstSFI CTRYAG 2 cut(s) 125, 588
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 6 cut(s) 382, 683, 760, 791, 843, 1239
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 2 cut(s) 268, 1238
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 1 cut(s) 523
BtrI CACGTC 1 cut(s) 1122
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 524, 1036
Cac8I GCNNGC 3 cut(s) 71, 376, 1090
CciI TCATGA 1 cut(s) 1286
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 3 cut(s) 211, 960, 1115
CseI GACGC 1 cut(s) 837
Csp6I GTAC 1 cut(s) 391
CviAII CATG 8 cut(s) 181, 189, 722, 964, 1018, 1201, 1277, 1287
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 4 cut(s) 306, 596, 664, 699
DpnI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1259
DpnII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
EciI GGCGGA 1 cut(s) 1240
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 2 cut(s) 797, 866
Eco47I GGWCC 3 cut(s) 211, 960, 1115
Eco57I CTGAAG 2 cut(s) 420, 573
Eco91I GGTNACC 1 cut(s) 1151
EcoO65I GGTNACC 1 cut(s) 1151
EcoRII CCWGG 2 cut(s) 687, 853
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 1019
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 8 cut(s) 184, 192, 725, 967, 1021, 1204, 1280, 1290
FaqI GGGAC 1 cut(s) 285
FatI CATG 8 cut(s) 180, 188, 721, 963, 1017, 1200, 1276, 1286
FbaI TGATCA 1 cut(s) 114
Fnu4HI GCNGC 8 cut(s) 396, 672, 696, 774, 777, 780, 832, 1228
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 8 cut(s) 396, 672, 696, 774, 777, 780, 832, 1228
FspBI CTAG 2 cut(s) 47, 375
GluI GCNGC 8 cut(s) 396, 672, 696, 774, 777, 780, 832, 1228
GsaI CCCAGC 2 cut(s) 77, 609
GsuI CTGGAG 1 cut(s) 1190
HaeIII GGCC 1 cut(s) 523
HapII CCGG 3 cut(s) 341, 500, 1080
HgaI GACGC 1 cut(s) 837
Hin1II CATG 8 cut(s) 184, 192, 725, 967, 1021, 1204, 1280, 1290
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 3 cut(s) 341, 500, 1080
HphI GGTGA 7 cut(s) 89, 449, 641, 883, 1163, 1186, 1252
Hpy166II GTNNAC 3 cut(s) 44, 412, 976
Hpy188I TCNGA 9 cut(s) 249, 307, 332, 455, 599, 754, 817, 1011, 1119
Hpy188III TCNNGA 8 cut(s) 58, 118, 341, 500, 904, 1042, 1057, 1287
Hpy8I GTNNAC 3 cut(s) 44, 412, 976
Hpy99I CGWCG 2 cut(s) 831, 1123
HpyAV CCTTC 2 cut(s) 212, 941
HpyCH4III ACNGT 4 cut(s) 787, 841, 1031, 1100
HpyCH4IV ACGT 4 cut(s) 150, 621, 1121, 1214
HpyF10VI GCNNNNNNNGC 8 cut(s) 375, 668, 677, 709, 718, 779, 875, 1089
HpyF3I CTNAG 4 cut(s) 306, 596, 664, 699
HpySE526I ACGT 4 cut(s) 150, 621, 1121, 1214
Hsp92II CATG 8 cut(s) 184, 192, 725, 967, 1021, 1204, 1280, 1290
Kpn2I TCCGGA 2 cut(s) 340, 499
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 3 cut(s) 502, 573, 1253
Lsp1109I GCAGC 6 cut(s) 382, 683, 760, 791, 843, 1239
LweI GCATC 3 cut(s) 498, 957, 1047
MaeI CTAG 2 cut(s) 47, 375
MaeII ACGT 4 cut(s) 150, 621, 1121, 1214
MaeIII GTNAC 4 cut(s) 58, 889, 1151, 1158
MalI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1259
MbiI CCGCTC 1 cut(s) 568
MboI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
MboII GAAGA 3 cut(s) 566, 833, 1057
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 3 cut(s) 46, 547, 1090
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 3 cut(s) 517, 640, 1180
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 5 cut(s) 14, 323, 422, 588, 641
MmeI TCCRAC 4 cut(s) 238, 708, 1125, 1142
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 1019
MroI TCCGGA 2 cut(s) 340, 499
MscI TGGCCA 1 cut(s) 523
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 3 cut(s) 110, 266, 1236
Msp20I TGGCCA 1 cut(s) 523
MspA1I CMGCKG 1 cut(s) 1133
MspI CCGG 3 cut(s) 341, 500, 1080
MspR9I CCNGG 2 cut(s) 689, 855
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 2 cut(s) 689, 855
MwoI GCNNNNNNNGC 8 cut(s) 375, 668, 677, 709, 718, 779, 875, 1089
NdeII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 8 cut(s) 184, 192, 725, 967, 1021, 1204, 1280, 1290
NlaIV GGNNCC 4 cut(s) 464, 532, 961, 1249
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 58, 889, 1151
NsiI ATGCAT 1 cut(s) 1019
NspI RCATGY 2 cut(s) 725, 1021
OliI CACNNNNGTG 1 cut(s) 266
PagI TCATGA 1 cut(s) 1286
PciSI GCTCTTC 1 cut(s) 816
PfeI GAWTC 5 cut(s) 250, 995, 1048, 1127, 1283
PfoI TCCNGGA 1 cut(s) 687
PkrI GCNGC 8 cut(s) 397, 673, 697, 775, 778, 781, 833, 1229
PleI GAGTC 5 cut(s) 13, 322, 422, 588, 640
PpsI GAGTC 5 cut(s) 13, 322, 422, 588, 640
Ppu21I YACGTR 2 cut(s) 151, 622
Psp6I CCWGG 2 cut(s) 687, 853
PspEI GGTNACC 1 cut(s) 1151
PspFI CCCAGC 2 cut(s) 73, 605
PspGI CCWGG 2 cut(s) 687, 853
PspN4I GGNNCC 4 cut(s) 464, 532, 961, 1249
PspPI GGNCC 3 cut(s) 211, 960, 1115
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 3 cut(s) 110, 266, 1236
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 8 cut(s) 396, 672, 696, 774, 777, 780, 832, 1228
Sau3AI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
Sau96I GGNCC 3 cut(s) 211, 960, 1115
SchI GAGTC 5 cut(s) 14, 323, 422, 588, 641
ScrFI CCNGG 2 cut(s) 689, 855
SduI GDGCHC 3 cut(s) 46, 547, 1090
SfaNI GCATC 3 cut(s) 498, 957, 1047
SfcI CTRYAG 2 cut(s) 125, 588
SinI GGWCC 3 cut(s) 211, 960, 1115
SmiMI CAYNNNNRTG 3 cut(s) 110, 266, 1236
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 517, 640, 1180
SspI AATATT 1 cut(s) 89
SspMI CTAG 2 cut(s) 47, 375
StyD4I CCNGG 2 cut(s) 687, 853
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 4 cut(s) 787, 841, 1031, 1100
TaiI ACGT 4 cut(s) 153, 624, 1124, 1217
TaqI TCGA 3 cut(s) 110, 1041, 1103
TasI AATT 3 cut(s) 517, 640, 1180
TauI GCSGC 2 cut(s) 698, 779
TfiI GAWTC 5 cut(s) 250, 995, 1048, 1127, 1283
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 2 cut(s) 531, 1036
TseFI GTSAC 3 cut(s) 58, 889, 1151
TseI GCWGC 6 cut(s) 395, 671, 773, 779, 831, 1227
Tsp45I GTSAC 3 cut(s) 58, 889, 1151
TspDTI ATGAA 4 cut(s) 82, 99, 603, 1275
TspRI CASTG 2 cut(s) 531, 1036
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 211, 960, 1115
XceI RCATGY 2 cut(s) 725, 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 2 cut(s) 47, 375
Zsp2I ATGCAT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.