Rw3G025910

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000734
Physical Location & Seq
Reverse (-)
34993173 .. 34994442
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025910.1

Sequence Viewer

Length: 1128 bp
ATGGATGGAAACAGCGTTGAACCCCGACTGAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGAGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACTATCACGAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACTCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCATGGCACAAGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATCCTAATCCTTGTAAAGCTTGCTCTCACAACAAGTATGCTGCCGCAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGATGAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGCATGGGAGCAGGTGGCCAAGGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGCAGTCAAGCGGTTTTTCAGGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCCATGCATTGTGCTTTGTAGCTGCGGCAACAGCCGTGAAAACTGCCGTGGAAAAGTACTTTTCAAAAGTGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATTTCCGATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTAAGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTATTTGGTCCGACGTGTGATCCCATTGACAAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCGCAGCCAAGATCACCTACCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

375

Amino Acids

41.47

Weight (kDa)

7.11

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 344 8.2e-07 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 53 - 171 1e-34 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_Arg_deC_N PF02784 183 - 250 4.2e-07 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccII CGCG 1 cut(s) 852
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 7 cut(s) 387, 475, 560, 575, 618, 656, 749
AclWI GGATC 5 cut(s) 246, 433, 827, 864, 1004
AcoI YGGCCR 2 cut(s) 513, 726
AfaI GTAC 4 cut(s) 70, 531, 689, 862
AfeI AGCGCT 1 cut(s) 867
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 1004
AgsI TTSAA 5 cut(s) 20, 302, 610, 696, 875
AjiI CACGTC 1 cut(s) 1005
AjnI CCWGG 2 cut(s) 176, 934
AluBI AGCT 3 cut(s) 362, 485, 653
AluI AGCT 3 cut(s) 362, 485, 653
Alw21I GWGCWC 3 cut(s) 37, 539, 973
Alw26I GTCTC 1 cut(s) 746
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 5 cut(s) 246, 433, 827, 864, 1004
Aor13HI TCCGGA 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 867
AoxI GGCC 2 cut(s) 513, 726
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 383, 653, 1100
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspLEI GCGC 3 cut(s) 852, 868, 1100
AspS9I GGNCC 2 cut(s) 199, 998
AsuC2I CCSGG 3 cut(s) 236, 455, 735
AsuHPI GGTGA 2 cut(s) 1036, 1102
AvaII GGWCC 2 cut(s) 199, 998
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 515
BanII GRGCYC 1 cut(s) 735
Bbv12I GWGCWC 3 cut(s) 37, 539, 973
BbvI GCAGC 3 cut(s) 370, 640, 1112
BccI CCATC 2 cut(s) 190, 718
BceAI ACGGC 3 cut(s) 650, 662, 771
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 2 cut(s) 178, 936
BcnI CCSGG 3 cut(s) 236, 455, 735
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 2 cut(s) 86, 869
BfmI CTRYAG 1 cut(s) 1072
BfoI RGCGCY 1 cut(s) 869
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 5 cut(s) 384, 387, 654, 657, 1101
BlsI GCNGC 5 cut(s) 385, 388, 655, 658, 1102
BmcAI AGTACT 2 cut(s) 70, 689
Bme1390I CCNGG 5 cut(s) 178, 236, 455, 735, 936
Bme18I GGWCC 2 cut(s) 199, 998
BmgBI CACGTC 1 cut(s) 1005
BmgT120I GGNCC 2 cut(s) 199, 998
BmiI GGNNCC 2 cut(s) 833, 841
BmrFI CCNGG 5 cut(s) 178, 236, 455, 735, 936
BmsI GCATC 2 cut(s) 486, 837
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 3 cut(s) 236, 455, 735
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 252, 516, 678, 835, 934
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 821
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 2 cut(s) 178, 936
BseDI CCNNGG 5 cut(s) 252, 516, 678, 835, 934
BseGI GGATG 2 cut(s) 10, 1067
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 3 cut(s) 20, 56, 285
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 370, 640, 1112
Bsh1236I CGCG 1 cut(s) 852
Bsh1285I CGRYCG 1 cut(s) 739
BshFI GGCC 2 cut(s) 515, 728
BsiEI CGRYCG 1 cut(s) 739
BsiHKAI GWGCWC 3 cut(s) 37, 539, 973
BsiSI CCGG 4 cut(s) 236, 455, 488, 735
BslFI GGGAC 1 cut(s) 616
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 746
BsmBI CGTCTC 1 cut(s) 746
BsmFI GGGAC 1 cut(s) 616
BsnI GGCC 2 cut(s) 515, 728
Bsp1286I GDGCHC 4 cut(s) 37, 539, 735, 973
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 7 cut(s) 387, 475, 560, 575, 618, 656, 749
BspANI GGCC 2 cut(s) 515, 728
BspCNI CTCAG 3 cut(s) 21, 57, 286
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 852
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 2 cut(s) 833, 841
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 5 cut(s) 246, 433, 827, 864, 1004
BspQI GCTCTTC 1 cut(s) 544
BsrI ACTGG 1 cut(s) 821
BssECI CCNNGG 5 cut(s) 252, 516, 678, 835, 934
BssMI GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
BssT1I CCWWGG 3 cut(s) 252, 516, 835
Bst2UI CCWGG 2 cut(s) 178, 936
Bst4CI ACNGT 4 cut(s) 281, 534, 911, 983
Bst6I CTCTTC 1 cut(s) 544
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 364, 590, 768, 973
BstDEI CTNAG 3 cut(s) 29, 65, 294
BstDSI CCRYGG 2 cut(s) 678, 835
BstF5I GGATG 2 cut(s) 10, 1067
BstFNI CGCG 1 cut(s) 852
BstH2I RGCGCY 1 cut(s) 869
BstHHI GCGC 3 cut(s) 852, 868, 1100
BstKTI GATC 7 cut(s) 241, 334, 441, 822, 859, 1012, 1110
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
BstMCI CGRYCG 1 cut(s) 739
BstMWI GCNNNNNNNGC 4 cut(s) 589, 598, 662, 755
BstNI CCWGG 2 cut(s) 178, 936
BstNSI RCATGY 2 cut(s) 592, 605
BstSCI CCNGG 5 cut(s) 176, 234, 453, 733, 934
BstSFI CTRYAG 1 cut(s) 1072
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 852
BstV1I GCAGC 3 cut(s) 370, 640, 1112
BstX2I RGATCY 2 cut(s) 238, 438
BstYI RGATCY 2 cut(s) 238, 438
BsuRI GGCC 2 cut(s) 515, 728
BtgI CCRYGG 2 cut(s) 678, 835
BtrI CACGTC 1 cut(s) 1005
BtsCI GGATG 2 cut(s) 10, 1067
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 4 cut(s) 364, 590, 768, 973
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 3 cut(s) 852, 868, 1100
Cfr13I GGNCC 2 cut(s) 199, 998
Csp6I GTAC 4 cut(s) 69, 530, 688, 861
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviQI GTAC 4 cut(s) 69, 530, 688, 861
DdeI CTNAG 3 cut(s) 29, 65, 294
DpnI GATC 7 cut(s) 240, 333, 440, 821, 858, 1011, 1109
DpnII GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
EaeI YGGCCR 2 cut(s) 513, 726
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
EciI GGCGGA 1 cut(s) 590
Eco130I CCWWGG 3 cut(s) 252, 516, 835
Eco24I GRGCYC 1 cut(s) 735
Eco47I GGWCC 2 cut(s) 199, 998
Eco47III AGCGCT 1 cut(s) 867
EcoRII CCWGG 2 cut(s) 176, 934
EcoT14I CCWWGG 3 cut(s) 252, 516, 835
EcoT22I ATGCAT 3 cut(s) 603, 640, 899
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 3 cut(s) 252, 516, 835
Esp3I CGTCTC 1 cut(s) 746
FaqI GGGAC 1 cut(s) 616
Fnu4HI GCNGC 5 cut(s) 384, 387, 654, 657, 1101
FokI GGATG 2 cut(s) 17, 1054
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 5 cut(s) 384, 387, 654, 657, 1101
FspBI CTAG 2 cut(s) 86, 869
GlaI GCGC 3 cut(s) 851, 867, 1099
GluI GCNGC 5 cut(s) 384, 387, 654, 657, 1101
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 869
HaeIII GGCC 2 cut(s) 515, 728
HapII CCGG 4 cut(s) 236, 455, 488, 735
HhaI GCGC 3 cut(s) 852, 868, 1100
Hin6I GCGC 3 cut(s) 850, 866, 1098
HinP1I GCGC 3 cut(s) 850, 866, 1098
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 302, 416, 875
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 4 cut(s) 236, 455, 488, 735
HphI GGTGA 2 cut(s) 1036, 1102
Hpy166II GTNNAC 2 cut(s) 35, 400
Hpy188I TCNGA 8 cut(s) 195, 295, 443, 809, 891, 904, 1002, 1047
Hpy188III TCNNGA 7 cut(s) 49, 74, 109, 329, 488, 543, 569
Hpy8I GTNNAC 2 cut(s) 35, 400
Hpy99I CGWCG 1 cut(s) 1006
HpyAV CCTTC 3 cut(s) 200, 217, 821
HpyCH4III ACNGT 4 cut(s) 281, 534, 911, 983
HpyCH4IV ACGT 4 cut(s) 138, 184, 1004, 1064
HpyF10VI GCNNNNNNNGC 4 cut(s) 589, 598, 662, 755
HpyF3I CTNAG 3 cut(s) 29, 65, 294
HpySE526I ACGT 4 cut(s) 138, 184, 1004, 1064
HspAI GCGC 3 cut(s) 850, 866, 1098
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
LguI GCTCTTC 1 cut(s) 544
LmnI GCTCC 4 cut(s) 490, 505, 703, 845
Lsp1109I GCAGC 3 cut(s) 370, 640, 1112
LweI GCATC 2 cut(s) 486, 837
MaeI CTAG 2 cut(s) 86, 869
MaeII ACGT 4 cut(s) 138, 184, 1004, 1064
MaeIII GTNAC 2 cut(s) 185, 914
MalI GATC 7 cut(s) 240, 333, 440, 821, 858, 1011, 1109
MboI GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
MboII GAAGA 3 cut(s) 531, 558, 940
MflI RGATCY 2 cut(s) 238, 438
MhlI GDGCHC 4 cut(s) 37, 539, 735, 973
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 3 cut(s) 55, 446, 1123
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 2 cut(s) 226, 1025
MnlI CCTC 8 cut(s) 118, 176, 254, 421, 565, 603, 791, 796
Mox20I TGGCCA 1 cut(s) 515
Mph1103I ATGCAT 3 cut(s) 603, 640, 899
MroI TCCGGA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 515
MseI TTAA 6 cut(s) 162, 219, 399, 716, 1086, 1126
MslI CAYNNNNRTG 1 cut(s) 602
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 4 cut(s) 236, 455, 488, 735
MspR9I CCNGG 5 cut(s) 178, 236, 455, 735, 936
MvaI CCWGG 2 cut(s) 178, 936
MvnI CGCG 1 cut(s) 852
MwoI GCNNNNNNNGC 4 cut(s) 589, 598, 662, 755
NciI CCSGG 3 cut(s) 236, 455, 735
NcoI CCATGG 1 cut(s) 835
NdeII GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
NlaIV GGNNCC 2 cut(s) 833, 841
NmeAIII GCCGAG 1 cut(s) 754
NmuCI GTSAC 1 cut(s) 914
NsiI ATGCAT 3 cut(s) 603, 640, 899
NspI RCATGY 2 cut(s) 592, 605
PaeI GCATGC 1 cut(s) 592
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PfeI GAWTC 3 cut(s) 302, 416, 875
PkrI GCNGC 5 cut(s) 385, 388, 655, 658, 1102
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 176, 934
PspGI CCWGG 2 cut(s) 176, 934
PspN4I GGNNCC 2 cut(s) 833, 841
PspPI GGNCC 2 cut(s) 199, 998
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PsuI RGATCY 2 cut(s) 238, 438
RsaI GTAC 4 cut(s) 70, 531, 689, 862
RsaNI GTAC 4 cut(s) 69, 530, 688, 861
RseI CAYNNNNRTG 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 544
SaqAI TTAA 6 cut(s) 162, 219, 399, 716, 1086, 1126
SatI GCNGC 5 cut(s) 384, 387, 654, 657, 1101
Sau3AI GATC 7 cut(s) 238, 331, 438, 819, 856, 1009, 1107
Sau96I GGNCC 2 cut(s) 199, 998
ScaI AGTACT 2 cut(s) 70, 689
ScrFI CCNGG 5 cut(s) 178, 236, 455, 735, 936
SduI GDGCHC 4 cut(s) 37, 539, 735, 973
SfaNI GCATC 2 cut(s) 486, 837
SfcI CTRYAG 1 cut(s) 1072
SinI GGWCC 2 cut(s) 199, 998
SmiMI CAYNNNNRTG 1 cut(s) 602
SphI GCATGC 1 cut(s) 592
Sse9I AATT 3 cut(s) 55, 446, 1123
SsiI CCGC 7 cut(s) 387, 475, 560, 575, 618, 656, 749
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 869
StyD4I CCNGG 5 cut(s) 176, 234, 453, 733, 934
StyI CCWWGG 3 cut(s) 252, 516, 835
TaaI ACNGT 4 cut(s) 281, 534, 911, 983
TaiI ACGT 4 cut(s) 141, 187, 1007, 1067
TaqI TCGA 3 cut(s) 101, 276, 986
TaqII GACCGA 1 cut(s) 279
TasI AATT 3 cut(s) 55, 446, 1123
TatI WGTACW 2 cut(s) 68, 687
TauI GCSGC 2 cut(s) 389, 659
TfiI GAWTC 3 cut(s) 302, 416, 875
Tru1I TTAA 6 cut(s) 162, 219, 399, 716, 1086, 1126
Tru9I TTAA 6 cut(s) 162, 219, 399, 716, 1086, 1126
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 3 cut(s) 383, 653, 1100
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 2 cut(s) 90, 422
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 199, 998
XceI RCATGY 2 cut(s) 592, 605
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 850
XspI CTAG 2 cut(s) 86, 869
ZrmI AGTACT 2 cut(s) 70, 689
Zsp2I ATGCAT 3 cut(s) 603, 640, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.