Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000053.1

Orthogroup ID

OG0000734

Physical Location & Seq

Genomic Coordinates Forward (+)

18626 .. 19057

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000053.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcctcacatgcatgtgttgaacattggaggtggcctcgtgtccgaaccatctttatttgaagctgcggcgtcagccgtgaaaatcgctgtggagacgtatttttcaaaggaagagctaagcagcttaacggtgatagccgagccaggtcggttttttgcagagaccgctttcacgcttttcaccaacattatcggaagcgcaagagaggggagctcagaaccctacttgaagggttttatacgtgaggaccctagaaccctacttgaatcatgcattgctctgaaatgcatgtccaataacagtgacgacatcgagaagaatccagtcttgaaagtatgtgacaaaggtactggtggtgctcgcacttacagttcgactgtgtttggtccgacgtctgatccggctgacaaggtgttggagggcacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130

Pfam Domains

Protein Families

Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

4.9

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000734)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24730 FvH4_4g24750 FvH4_4g24750 FvH4_4g24751 FvH4_4g27890 FvH4_4g27890
malus_domestica	MD05G1034000.v1.1 MD05G1036600.v1.1
prunus_persica	Prupe.8G044900_v2.0.a1 Prupe.8G047700_v2.0.a1 Prupe.8G048000_v2.0.a1 Prupe.8G048200_v2.0.a1
pyrus_communis	pycom05g02700
rosa_chinensis	RchiOBHm_Chr3g0485801 RchiOBHm_Chr3g0485811 RchiOBHm_Chr3g0485831 RchiOBHm_Chr3g0485901 RchiOBHm_Chr3g0490321 RchiOBHm_Chr3g0490331 RchiOBHm_Chr4g0431831 RchiOBHm_Chr7g0227121
rosa_laevigata	RLG00000001667 RLG00000004654 RLG00000006885 RLG00000023124
rosa_multiflora	Rmu_co8388845.1_g000001 Rmu_sc0001459.1_g000007 Rmu_sc0001527.1_g000018 Rmu_sc0001863.1_g000009 Rmu_sc0002489.1_g000031 Rmu_sc0004876.1_g000007 Rmu_sc0004876.1_g000010 Rmu_sc0012870.1_g000009 Rmu_sc0028785.1_g000001 Rmu_ssc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00232310 Rroxscaffold_6G00393560 Rroxscaffold_6G00393570 Rroxscaffold_6G00396220 Rroxscaffold_6G00396250
rosa_rugosa	Rorug03G0221900 Rorug04G0252500 Rorug07G0240700
rosa_samantha	Rh3AG270800 Rh3AG271000 Rh3AG292400 Rh3AG292500 Rh3BG306600 Rh3CG305100 Rh3CG305300 Rh3CG326600 Rh3CG326700 Rh3DG301100 Rh3DG301300 Rh3DG325700 Rh3DG325800 Rh4AG309400 Rh4BG316700 Rh4CG332000 Rh4DG311600 Rh7AG099200 Rh7AG390600 Rh7BG101000 Rh7BG101100 Rh7BG375500 Rh7CG409600 Rh7DG387900
rosa_wichuraiana	Rw0G002980 Rw3G024130 Rw3G025910 Rw4G026890 Rw7G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	398
AciI	CCGC	2 cut(s)	68, 168
AclWI	GGATC	1 cut(s)	395
AcvI	CACGTG	1 cut(s)	429
AcyI	GRCGYC	2 cut(s)	71, 395
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	22, 62, 108, 232, 269, 334
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	65, 118, 126, 216
AluI	AGCT	4 cut(s)	65, 118, 126, 216
Alw21I	GWGCWC	2 cut(s)	218, 364
Alw26I	GTCTC	2 cut(s)	89, 158
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	65, 123
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	250, 389
AsuHPI	GGTGA	2 cut(s)	145, 175
AvaII	GGWCC	2 cut(s)	250, 389
BaeGI	GKGCMC	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	218, 364
BbvI	GCAGC	2 cut(s)	52, 135
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	2 cut(s)	89, 158
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	3 cut(s)	66, 69, 124
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	3 cut(s)	67, 70, 125
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	2 cut(s)	250, 389
BmgT120I	GGNCC	2 cut(s)	250, 389
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	1 cut(s)	147
BplI	GAGNNNNNCTC	4 cut(s)	21, 53, 200, 232
Bpu1102I	GCTNAGC	1 cut(s)	119
BsaAI	YACGTR	2 cut(s)	245, 429
BsaHI	GRCGYC	2 cut(s)	71, 395
BsaI	GGTCTC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	326, 358
Bse3DI	GCAATG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	326, 358
BseSI	GKGCMC	1 cut(s)	428
BseXI	GCAGC	2 cut(s)	52, 135
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	218, 364
BsiSI	CCGG	1 cut(s)	404
BsmAI	GTCTC	2 cut(s)	89, 158
BsmBI	CGTCTC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	218, 364, 428
Bsp143I	GATC	1 cut(s)	400
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	2 cut(s)	68, 168
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	1 cut(s)	395
BspQI	GCTCTTC	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	326, 358
BssMI	GATC	1 cut(s)	400
BssNI	GRCGYC	2 cut(s)	71, 395
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	4 cut(s)	133, 305, 374, 382
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	2 cut(s)	71, 395
BstBAI	YACGTR	2 cut(s)	245, 429
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	119, 217
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	2 cut(s)	89, 158
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 74, 167
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	3 cut(s)	13, 17, 295
BstSCI	CCNGG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	52, 135
BsuRI	GGCC	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	250, 389
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	4 cut(s)	10, 14, 273, 292
CviJI	RGCY	9 cut(s)	36, 65, 77, 118, 126, 140, 145, 216, 407
CviKI_1	RGCY	9 cut(s)	36, 65, 77, 118, 126, 140, 145, 216, 407
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	119, 217
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	250, 389
Eco53kI	GAGCTC	1 cut(s)	216
Eco72I	CACGTG	1 cut(s)	429
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	145
EcoT22I	ATGCAT	3 cut(s)	15, 278, 293
EcoT38I	GRGCYC	1 cut(s)	218
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	4 cut(s)	13, 17, 276, 295
FaiI	YATR	6 cut(s)	11, 15, 242, 274, 293, 340
FatI	CATG	4 cut(s)	9, 13, 272, 291
Fnu4HI	GCNGC	3 cut(s)	66, 69, 124
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	66, 69, 124
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	3 cut(s)	66, 69, 124
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	404
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	2 cut(s)	71, 395
Hin1II	CATG	4 cut(s)	13, 17, 276, 295
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	269, 322
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	2 cut(s)	145, 175
Hpy188I	TCNGA	6 cut(s)	46, 197, 220, 285, 393, 400
Hpy188III	TCNNGA	2 cut(s)	316, 331
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	4 cut(s)	133, 305, 374, 382
HpyCH4IV	ACGT	4 cut(s)	98, 244, 395, 428
HpyCH4V	TGCA	4 cut(s)	13, 161, 276, 291
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 74, 167
HpyF3I	CTNAG	2 cut(s)	119, 217
HpySE526I	ACGT	4 cut(s)	98, 244, 395, 428
Hsp92I	GRCGYC	2 cut(s)	71, 395
Hsp92II	CATG	4 cut(s)	13, 17, 276, 295
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	400
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	132, 159, 339, 339, 417
Lsp1109I	GCAGC	2 cut(s)	52, 135
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	4 cut(s)	98, 244, 395, 428
MaeIII	GTNAC	2 cut(s)	305, 341
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	125, 331
MhlI	GDGCHC	3 cut(s)	218, 364, 428
MmeI	TCCRAC	2 cut(s)	399, 416
MnlI	CCTC	6 cut(s)	15, 23, 47, 202, 241, 415
Mph1103I	ATGCAT	3 cut(s)	15, 278, 293
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	2 cut(s)	12, 14
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	3 cut(s)	10, 74, 167
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	4 cut(s)	13, 17, 276, 295
NlaIV	GGNNCC	1 cut(s)	252
NmeAIII	GCCGAG	1 cut(s)	166
NmuCI	GTSAC	2 cut(s)	305, 341
NsiI	ATGCAT	3 cut(s)	15, 278, 293
NspI	RCATGY	3 cut(s)	13, 17, 295
PciSI	GCTCTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	269, 322
PkrI	GCNGC	3 cut(s)	67, 70, 125
PmaCI	CACGTG	1 cut(s)	429
PmlI	CACGTG	1 cut(s)	429
Ppu21I	YACGTR	2 cut(s)	245, 429
PpuMI	RGGWCCY	1 cut(s)	250
Psp124BI	GAGCTC	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	145
PspCI	CACGTG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	2 cut(s)	250, 389
PspPPI	RGGWCCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	12, 14
SacI	GAGCTC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	3 cut(s)	66, 69, 124
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	2 cut(s)	250, 389
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	218, 364, 428
SinI	GGWCC	2 cut(s)	250, 389
SmiMI	CAYNNNNRTG	2 cut(s)	12, 14
SsiI	CCGC	2 cut(s)	68, 168
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	4 cut(s)	133, 305, 374, 382
TaiI	ACGT	4 cut(s)	101, 247, 398, 431
TaqI	TCGA	2 cut(s)	315, 377
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	2 cut(s)	269, 322
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	2 cut(s)	305, 341
TseI	GCWGC	2 cut(s)	65, 123
Tsp45I	GTSAC	2 cut(s)	305, 341
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	250, 389
XceI	RCATGY	3 cut(s)	13, 17, 295
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	396
Zsp2I	ATGCAT	3 cut(s)	15, 278, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.