Rh3CG305300

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000734
Physical Location & Seq
Forward (+)
31824502 .. 31825824
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG305300.1

Sequence Viewer

Length: 1275 bp
ATGGAGTCGTGGAATGTAGAGAGTCTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGACCAATAACAGGCTGGGTGATGATGAATATTTCATTCAGAAAATCATTTCGATGATCAAGAAACTGCAGCCAAGTGAGGAAGCATTTTACGTGCTGGATTTGGGTCTTGTAAGCAACCTCATGGACACATGGAAACGTAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCACCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTTGGAGTTTCTCCGGATCACATCATCTATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAACCACTTATGACTCAGTGGGTGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCGGACGAGAGTGGGTGCAATTGGCCACTGGGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCGCTCAAACTGCTGGACTCAGAGTAGTTGGGGTTTCATTTCACGTAGGAGGTGAGTCCTACAATTTTCAAGCATACAAAACAGCCTTAGAGGCAGCTAAGGCGGTTTTCCAGGAGGCTGCTAAGCTCTCTATGCCTCCCTTGCATGTGTTGGACATTGGCGGTGGCTTCTTGTCCAAGCCATCGTCCTTTGAAGCTGCGGCAGCAGCCGTGAAAACCTCTGTGGAGACTTATTTTTCAGAGGAGGAGCGACGCAGCTTGACGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACAATACTGGATCAACGAAGGGTCTTATGGGTCCATGATGCTTGCCCCTAAAACCCTACTTGAATCGTGCATTGCTCTGAGATGCATGTCCAATAACAGTGAGGGCATCGAGAAGAATCCAGTCTTGATGGTCTGTGGCAAAGCTACTGGCTGTGCTCGCACTTATAGTTCGACTGTGTTTGGTCCGACGTGTGATTCGGCTGACAAGGTGTTGGATGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTTGGCGCGTAGCAGCCACTTCCATGGTTTTGGCTCCGCCAAGATCACCTATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

424

Amino Acids

46.26

Weight (kDa)

5.72

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 50 - 401 6e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 57 - 290 1.6e-66 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 2 cut(s) 568, 581
AccII CGCG 1 cut(s) 1219
AccIII TCCGGA 2 cut(s) 340, 499
AciI CCGC 8 cut(s) 487, 566, 579, 680, 738, 776, 876, 1248
AclWI GGATC 4 cut(s) 351, 445, 478, 947
AcoI YGGCCR 1 cut(s) 521
AcuI CTGAAG 2 cut(s) 420, 573
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 69, 208
AflIII ACRYGT 1 cut(s) 1118
AgsI TTSAA 6 cut(s) 29, 282, 446, 647, 770, 992
AjiI CACGTC 1 cut(s) 1119
AjnI CCWGG 2 cut(s) 687, 853
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 9 cut(s) 326, 374, 378, 497, 674, 703, 773, 834, 1073
AluI AGCT 9 cut(s) 326, 374, 378, 497, 674, 703, 773, 834, 1073
Alw21I GWGCWC 3 cut(s) 46, 547, 1087
Alw26I GTCTC 3 cut(s) 567, 797, 866
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 4 cut(s) 351, 445, 478, 947
Aor13HI TCCGGA 2 cut(s) 340, 499
AoxI GGCC 1 cut(s) 521
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 9 cut(s) 127, 395, 671, 695, 773, 779, 782, 831, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 1108, 1140
AspLEI GCGC 1 cut(s) 1219
AspS9I GGNCC 3 cut(s) 211, 960, 1112
AsuHPI GGTGA 8 cut(s) 89, 449, 641, 853, 883, 1160, 1183, 1249
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 3 cut(s) 211, 960, 1112
BaeGI GKGCMC 1 cut(s) 46
BalI TGGCCA 1 cut(s) 523
BanI GGYRCC 1 cut(s) 462
Bbv12I GWGCWC 3 cut(s) 46, 547, 1087
BbvI GCAGC 9 cut(s) 139, 382, 682, 683, 760, 791, 794, 843, 1236
BccI CCATC 3 cut(s) 766, 1051, 1139
BceAI ACGGC 2 cut(s) 212, 770
BciT130I CCWGG 2 cut(s) 689, 855
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 3 cut(s) 567, 797, 866
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 125
BglI GCCNNNNNGGC 1 cut(s) 668
BlpI GCTNAGC 1 cut(s) 699
Bme1390I CCNGG 2 cut(s) 689, 855
Bme18I GGWCC 3 cut(s) 211, 960, 1112
BmgBI CACGTC 1 cut(s) 1119
BmgT120I GGNCC 3 cut(s) 211, 960, 1112
BmiI GGNNCC 4 cut(s) 464, 532, 961, 1246
BmrFI CCNGG 2 cut(s) 689, 855
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 4 cut(s) 498, 957, 1001, 1044
BmtI GCTAGC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 1187
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 258
BsaAI YACGTR 2 cut(s) 151, 622
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 866
BsaJI CCNNGG 2 cut(s) 264, 1234
BsaWI WCCGGW 2 cut(s) 340, 499
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 208
Bse1I ACTGG 6 cut(s) 531, 941, 1049, 1081, 1153, 1170
Bse3DI GCAATG 1 cut(s) 999
Bse8I GATNNNNATC 1 cut(s) 488
BseAI TCCGGA 2 cut(s) 340, 499
BseBI CCWGG 2 cut(s) 689, 855
BseDI CCNNGG 2 cut(s) 264, 1234
BseGI GGATG 1 cut(s) 1150
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 69, 208
BseMI GCAATG 1 cut(s) 999
BseMII CTCAG 4 cut(s) 297, 444, 610, 998
BseNI ACTGG 6 cut(s) 531, 941, 1049, 1081, 1153, 1170
BseRI GAGGAG 4 cut(s) 245, 560, 833, 836
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 9 cut(s) 139, 382, 682, 683, 760, 791, 794, 843, 1236
BseYI CCCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 1219
BshFI GGCC 1 cut(s) 523
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 3 cut(s) 46, 547, 1087
BsiSI CCGG 2 cut(s) 341, 500
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 69, 208
BsmAI GTCTC 3 cut(s) 567, 797, 866
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 523
Bso31I GGTCTC 1 cut(s) 866
Bsp1286I GDGCHC 3 cut(s) 46, 547, 1087
Bsp13I TCCGGA 2 cut(s) 340, 499
Bsp143I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
Bsp1720I GCTNAGC 1 cut(s) 699
Bsp19I CCATGG 1 cut(s) 1234
BspACI CCGC 8 cut(s) 487, 566, 579, 680, 738, 776, 876, 1248
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 4 cut(s) 298, 443, 609, 999
BspEI TCCGGA 2 cut(s) 340, 499
BspFNI CGCG 1 cut(s) 1219
BspLI GGNNCC 4 cut(s) 464, 532, 961, 1246
BspMAI CTGCAG 1 cut(s) 129
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 4 cut(s) 351, 445, 478, 947
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 1 cut(s) 866
BsrBI CCGCTC 2 cut(s) 568, 581
BsrDI GCAATG 1 cut(s) 999
BsrI ACTGG 6 cut(s) 531, 941, 1049, 1081, 1153, 1170
BssECI CCNNGG 2 cut(s) 264, 1234
BssMI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
BssT1I CCWWGG 2 cut(s) 264, 1234
Bst2UI CCWGG 2 cut(s) 689, 855
Bst4CI ACNGT 4 cut(s) 293, 841, 1028, 1105
BstBAI YACGTR 2 cut(s) 151, 622
BstC8I GCNNGC 3 cut(s) 376, 972, 1087
BstDEI CTNAG 7 cut(s) 306, 430, 596, 664, 675, 699, 1007
BstDSI CCRYGG 1 cut(s) 1234
BstEII GGTNACC 1 cut(s) 1148
BstF5I GGATG 1 cut(s) 1150
BstFNI CGCG 1 cut(s) 1219
BstHHI GCGC 1 cut(s) 1219
BstKTI GATC 7 cut(s) 52, 117, 346, 453, 486, 942, 1257
BstMAI GTCTC 3 cut(s) 567, 797, 866
BstMBI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
BstNI CCWGG 2 cut(s) 689, 855
BstNSI RCATGY 2 cut(s) 725, 1018
BstPI GGTNACC 1 cut(s) 1148
BstSCI CCNGG 2 cut(s) 687, 853
BstSFI CTRYAG 1 cut(s) 125
BstSLI GKGCMC 1 cut(s) 46
BstUI CGCG 1 cut(s) 1219
BstV1I GCAGC 9 cut(s) 139, 382, 682, 683, 760, 791, 794, 843, 1236
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 3 cut(s) 268, 1235, 1241
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 1234
BtrI CACGTC 1 cut(s) 1119
BtsCI GGATG 1 cut(s) 1150
BtsIMutI CAGTG 3 cut(s) 438, 524, 1033
Cac8I GCNNGC 3 cut(s) 376, 972, 1087
CfoI GCGC 1 cut(s) 1219
Cfr13I GGNCC 3 cut(s) 211, 960, 1112
CseI GACGC 1 cut(s) 837
Csp6I GTAC 1 cut(s) 391
CviAII CATG 7 cut(s) 181, 189, 722, 964, 1015, 1198, 1235
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 7 cut(s) 306, 430, 596, 664, 675, 699, 1007
DpnI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1256
DpnII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
EaeI YGGCCR 1 cut(s) 521
EciI GGCGGA 1 cut(s) 1237
Eco130I CCWWGG 2 cut(s) 264, 1234
Eco31I GGTCTC 1 cut(s) 866
Eco47I GGWCC 3 cut(s) 211, 960, 1112
Eco57I CTGAAG 2 cut(s) 420, 573
Eco91I GGTNACC 1 cut(s) 1148
EcoO65I GGTNACC 1 cut(s) 1148
EcoRII CCWGG 2 cut(s) 687, 853
EcoT14I CCWWGG 2 cut(s) 264, 1234
EcoT22I ATGCAT 1 cut(s) 1016
ErhI CCWWGG 2 cut(s) 264, 1234
FaeI CATG 7 cut(s) 184, 192, 725, 967, 1018, 1201, 1238
FaqI GGGAC 1 cut(s) 285
FatI CATG 7 cut(s) 180, 188, 721, 963, 1014, 1197, 1234
FbaI TGATCA 1 cut(s) 114
FokI GGATG 1 cut(s) 1157
FspBI CTAG 1 cut(s) 375
GlaI GCGC 1 cut(s) 1218
GsaI CCCAGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 1187
HaeIII GGCC 1 cut(s) 523
HapII CCGG 2 cut(s) 341, 500
HgaI GACGC 1 cut(s) 837
HhaI GCGC 1 cut(s) 1219
Hin1II CATG 7 cut(s) 184, 192, 725, 967, 1018, 1201, 1238
Hin6I GCGC 1 cut(s) 1217
HinP1I GCGC 1 cut(s) 1217
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 2 cut(s) 341, 500
HphI GGTGA 8 cut(s) 89, 449, 641, 853, 883, 1160, 1183, 1249
Hpy166II GTNNAC 2 cut(s) 44, 412
Hpy188I TCNGA 8 cut(s) 99, 307, 455, 599, 817, 929, 1008, 1116
Hpy188III TCNNGA 8 cut(s) 26, 58, 118, 341, 500, 904, 1039, 1054
Hpy8I GTNNAC 2 cut(s) 44, 412
Hpy99I CGWCG 2 cut(s) 831, 1120
HpyAV CCTTC 2 cut(s) 212, 941
HpyCH4III ACNGT 4 cut(s) 293, 841, 1028, 1105
HpyCH4IV ACGT 5 cut(s) 150, 196, 621, 1118, 1211
HpyF3I CTNAG 7 cut(s) 306, 430, 596, 664, 675, 699, 1007
HpySE526I ACGT 5 cut(s) 150, 196, 621, 1118, 1211
Hsp92II CATG 7 cut(s) 184, 192, 725, 967, 1018, 1201, 1238
HspAI GCGC 1 cut(s) 1217
Kpn2I TCCGGA 2 cut(s) 340, 499
Ksp22I TGATCA 1 cut(s) 114
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
LmnI GCTCC 4 cut(s) 502, 573, 823, 1250
Lsp1109I GCAGC 9 cut(s) 139, 382, 682, 683, 760, 791, 794, 843, 1236
LweI GCATC 4 cut(s) 498, 957, 1001, 1044
MaeI CTAG 1 cut(s) 375
MaeII ACGT 5 cut(s) 150, 196, 621, 1118, 1211
MaeIII GTNAC 5 cut(s) 58, 197, 889, 1148, 1155
MalI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1256
MbiI CCGCTC 2 cut(s) 568, 581
MboI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
MboII GAAGA 2 cut(s) 566, 1054
MfeI CAATTG 1 cut(s) 517
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 3 cut(s) 46, 547, 1087
MlsI TGGCCA 1 cut(s) 523
MluCI AATT 4 cut(s) 517, 640, 1177, 1270
MluNI TGGCCA 1 cut(s) 523
MlyI GAGTC 6 cut(s) 14, 31, 323, 422, 588, 641
MmeI TCCRAC 4 cut(s) 238, 708, 1122, 1139
Mox20I TGGCCA 1 cut(s) 523
Mph1103I ATGCAT 1 cut(s) 1016
MroI TCCGGA 2 cut(s) 340, 499
MscI TGGCCA 1 cut(s) 523
MseI TTAA 2 cut(s) 411, 1273
MslI CAYNNNNRTG 3 cut(s) 110, 266, 1233
Msp20I TGGCCA 1 cut(s) 523
MspI CCGG 2 cut(s) 341, 500
MspR9I CCNGG 2 cut(s) 689, 855
MunI CAATTG 1 cut(s) 517
MvaI CCWGG 2 cut(s) 689, 855
MvnI CGCG 1 cut(s) 1219
NcoI CCATGG 1 cut(s) 1234
NdeII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 7 cut(s) 184, 192, 725, 967, 1018, 1201, 1238
NlaIV GGNNCC 4 cut(s) 464, 532, 961, 1246
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 58, 889, 1148
NsiI ATGCAT 1 cut(s) 1016
NspI RCATGY 2 cut(s) 725, 1018
OliI CACNNNNGTG 1 cut(s) 266
PfeI GAWTC 4 cut(s) 250, 992, 1045, 1124
PfoI TCCNGGA 1 cut(s) 687
PleI GAGTC 6 cut(s) 13, 30, 322, 422, 588, 640
PpsI GAGTC 6 cut(s) 13, 30, 322, 422, 588, 640
Ppu21I YACGTR 2 cut(s) 151, 622
Psp6I CCWGG 2 cut(s) 687, 853
PspEI GGTNACC 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 2 cut(s) 687, 853
PspN4I GGNNCC 4 cut(s) 464, 532, 961, 1246
PspPI GGNCC 3 cut(s) 211, 960, 1112
PstI CTGCAG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 3 cut(s) 110, 266, 1233
SaqAI TTAA 2 cut(s) 411, 1273
Sau3AI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1254
Sau96I GGNCC 3 cut(s) 211, 960, 1112
SchI GAGTC 6 cut(s) 14, 31, 323, 422, 588, 641
ScrFI CCNGG 2 cut(s) 689, 855
SduI GDGCHC 3 cut(s) 46, 547, 1087
SfaNI GCATC 4 cut(s) 498, 957, 1001, 1044
SfcI CTRYAG 1 cut(s) 125
SinI GGWCC 3 cut(s) 211, 960, 1112
SmiMI CAYNNNNRTG 3 cut(s) 110, 266, 1233
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 4 cut(s) 517, 640, 1177, 1270
SsiI CCGC 8 cut(s) 487, 566, 579, 680, 738, 776, 876, 1248
SspI AATATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 687, 853
StyI CCWWGG 2 cut(s) 264, 1234
TaaI ACNGT 4 cut(s) 293, 841, 1028, 1105
TaiI ACGT 5 cut(s) 153, 199, 624, 1121, 1214
TaqI TCGA 4 cut(s) 110, 288, 1038, 1100
TasI AATT 4 cut(s) 517, 640, 1177, 1270
TauI GCSGC 2 cut(s) 581, 779
TfiI GAWTC 4 cut(s) 250, 992, 1045, 1124
Tru1I TTAA 2 cut(s) 411, 1273
Tru9I TTAA 2 cut(s) 411, 1273
TscAI CASTG 3 cut(s) 438, 531, 1033
TseFI GTSAC 3 cut(s) 58, 889, 1148
TseI GCWGC 9 cut(s) 127, 395, 671, 695, 773, 779, 782, 831, 1224
Tsp45I GTSAC 3 cut(s) 58, 889, 1148
TspDTI ATGAA 3 cut(s) 82, 99, 603
TspRI CASTG 3 cut(s) 438, 531, 1033
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 211, 960, 1112
XceI RCATGY 2 cut(s) 725, 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 70
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.