RLG00000023124

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000734
Physical Location & Seq
Reverse (-)
18510308 .. 18511585
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023124

Sequence Viewer

Length: 1278 bp
ATGGAGTCGTGGAATGTAAAGAGCGTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGACCAATAACAGGCCGGGTGATGATGAATATTTCATTCAGAATATCATTTCGACGATCAAGAAACTGCAGCCAAGTGAGGAAGCATTTTACGTGCTGGATTTGGGTCTTGTAAGCAACCTCATGCACACATGGAAACGTAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCACCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTTTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCACATCATCTATACTAATCCTTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAACCACCTATGACTCGGTAGGTGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCTGACGAGAGTGGGTGCAGATTCCCACTGGGTTCCGAGTTCGGAGCTCTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCGCTCAAACTGCAGGACTCAGAGTAGCTGGGGCTTCATTTCACATAGGAAGTGAGTTCTACAATTTTCAAGCATACAAAACAGCCATAGAGGCAGCTAAGGCCGTTTTTCAGGAGGCGGCTATGCTCTCTATGCCTCCCTTGCATGTGTTGGACGTTGGCGGTGGCTTCGTGTCCAAGCCATCGTCCTTTGAAGCTGCGGCAGCAGCCATGAAAACCTCTGTGGAGACCTATTTTTCAGAGGAAGAGCGACGCAGCTTAACGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGACAGACAATACTGGATCAACGAAGGGTTTTATGGGTCCATGAAGCTTGTGAACCCTAAAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTATGTGGCAAAGCTACCGGCGGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCAACGTGTGATTCTGCTGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTCGGCGTGTGGCAGCCACTTCAATGGTTTTGGCTCCGCCAAGATCACCCATCTTTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

426

Amino Acids

46.32

Weight (kDa)

5.68

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 50 - 402 8.4e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 56 - 290 1.3e-64 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccBSI CCGCTC 2 cut(s) 568, 581
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 9 cut(s) 487, 566, 579, 695, 738, 776, 876, 1083, 1251
AclWI GGATC 4 cut(s) 351, 445, 478, 947
AcuI CTGAAG 2 cut(s) 420, 573
AfaI GTAC 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 69, 208
AflIII ACRYGT 1 cut(s) 1121
AgsI TTSAA 7 cut(s) 29, 282, 446, 647, 770, 995, 1237
AjnI CCWGG 1 cut(s) 853
AjuI GAANNNNNNNTTGG 2 cut(s) 1111, 1143
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 3 cut(s) 46, 547, 1090
Alw26I GTCTC 3 cut(s) 567, 797, 866
Alw44I GTGCAC 1 cut(s) 42
AlwI GGATC 4 cut(s) 351, 445, 478, 947
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 2 cut(s) 71, 678
ApaLI GTGCAC 1 cut(s) 42
ApeKI GCWGC 8 cut(s) 127, 395, 671, 773, 779, 782, 831, 1227
AspS9I GGNCC 3 cut(s) 211, 960, 1115
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 7 cut(s) 89, 449, 853, 883, 1163, 1186, 1252
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 3 cut(s) 211, 960, 1115
BaeGI GKGCMC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 547
Bbv12I GWGCWC 3 cut(s) 46, 547, 1090
BbvI GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BccI CCATC 4 cut(s) 766, 1028, 1054, 1272
BceAI ACGGC 2 cut(s) 212, 665
BciT130I CCWGG 1 cut(s) 855
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 567, 797, 866
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 2 cut(s) 125, 588
BglI GCCNNNNNGGC 1 cut(s) 668
Bme1390I CCNGG 2 cut(s) 75, 855
Bme18I GGWCC 3 cut(s) 211, 960, 1115
BmgT120I GGNCC 3 cut(s) 211, 960, 1115
BmiI GGNNCC 4 cut(s) 464, 532, 961, 1249
BmrFI CCNGG 2 cut(s) 75, 855
BmrI ACTGGG 1 cut(s) 536
BmsI GCATC 2 cut(s) 498, 1047
BmtI GCTAGC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 1190
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 151
BsaBI GATNNNNATC 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 797, 866
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 208
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
Bse3DI GCAATG 1 cut(s) 1002
Bse8I GATNNNNATC 1 cut(s) 488
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 488
BseLI CCNNNNNNNGG 2 cut(s) 69, 208
BseMI GCAATG 1 cut(s) 1002
BseMII CTCAG 1 cut(s) 610
BseNI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BseRI GAGGAG 2 cut(s) 245, 560
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 535
BshFI GGCC 2 cut(s) 73, 680
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 3 cut(s) 46, 547, 1090
BsiSI CCGG 3 cut(s) 74, 341, 1080
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 69, 208
BsmAI GTCTC 3 cut(s) 567, 797, 866
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 73, 680
Bso31I GGTCTC 2 cut(s) 797, 866
Bsp1286I GDGCHC 3 cut(s) 46, 547, 1090
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
BspACI CCGC 9 cut(s) 487, 566, 579, 695, 738, 776, 876, 1083, 1251
BspANI GGCC 2 cut(s) 73, 680
BspCNI CTCAG 1 cut(s) 609
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 4 cut(s) 464, 532, 961, 1249
BspMAI CTGCAG 2 cut(s) 129, 592
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 4 cut(s) 351, 445, 478, 947
BspQI GCTCTTC 1 cut(s) 816
BspT107I GGYRCC 1 cut(s) 462
BspTNI GGTCTC 2 cut(s) 797, 866
BsrBI CCGCTC 2 cut(s) 568, 581
BsrDI GCAATG 1 cut(s) 1002
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 5 cut(s) 531, 941, 1052, 1156, 1173
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
Bst6I CTCTTC 1 cut(s) 816
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 376, 1090
BstDEI CTNAG 2 cut(s) 596, 675
BstEII GGTNACC 1 cut(s) 1151
BstKTI GATC 7 cut(s) 52, 117, 346, 453, 486, 942, 1260
BstMAI GTCTC 3 cut(s) 567, 797, 866
BstMBI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 725, 1021
BstPI GGTNACC 1 cut(s) 1151
BstSCI CCNGG 2 cut(s) 73, 853
BstSFI CTRYAG 2 cut(s) 125, 588
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
BstX2I RGATCY 1 cut(s) 450
BstXI CCANNNNNNTGG 2 cut(s) 268, 1238
BstYI RGATCY 1 cut(s) 450
BsuRI GGCC 2 cut(s) 73, 680
BtsIMutI CAGTG 2 cut(s) 524, 1036
Cac8I GCNNGC 2 cut(s) 376, 1090
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 3 cut(s) 211, 960, 1115
CseI GACGC 1 cut(s) 837
Csp6I GTAC 1 cut(s) 391
CviAII CATG 7 cut(s) 181, 189, 722, 787, 964, 1018, 1201
CviQI GTAC 1 cut(s) 391
DdeI CTNAG 2 cut(s) 596, 675
DpnI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1259
DpnII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
Eam1104I CTCTTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 816
EciI GGCGGA 1 cut(s) 1240
Ecl136II GAGCTC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 547
Eco31I GGTCTC 2 cut(s) 797, 866
Eco47I GGWCC 3 cut(s) 211, 960, 1115
Eco53kI GAGCTC 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 420, 573
Eco91I GGTNACC 1 cut(s) 1151
EcoICRI GAGCTC 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 1151
EcoRII CCWGG 1 cut(s) 853
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 1019
EcoT38I GRGCYC 1 cut(s) 547
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 7 cut(s) 184, 192, 725, 790, 967, 1021, 1204
FaqI GGGAC 1 cut(s) 285
FatI CATG 7 cut(s) 180, 188, 721, 786, 963, 1017, 1200
FriOI GRGCYC 1 cut(s) 547
FspBI CTAG 1 cut(s) 375
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 1190
HaeIII GGCC 2 cut(s) 73, 680
HapII CCGG 3 cut(s) 74, 341, 1080
HgaI GACGC 1 cut(s) 837
Hin1II CATG 7 cut(s) 184, 192, 725, 790, 967, 1021, 1204
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 9 cut(s) 5, 250, 314, 428, 519, 594, 995, 1048, 1127
HpaI GTTAAC 1 cut(s) 412
HpaII CCGG 3 cut(s) 74, 341, 1080
HphI GGTGA 7 cut(s) 89, 449, 853, 883, 1163, 1186, 1252
Hpy166II GTNNAC 3 cut(s) 44, 412, 976
Hpy188I TCNGA 8 cut(s) 99, 332, 455, 535, 542, 599, 817, 1011
Hpy188III TCNNGA 8 cut(s) 58, 118, 341, 500, 689, 904, 1042, 1057
Hpy8I GTNNAC 3 cut(s) 44, 412, 976
Hpy99I CGWCG 3 cut(s) 115, 831, 1219
HpyAV CCTTC 2 cut(s) 212, 941
HpyCH4III ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
HpyCH4IV ACGT 5 cut(s) 150, 196, 732, 1121, 1214
HpyF3I CTNAG 2 cut(s) 596, 675
HpySE526I ACGT 5 cut(s) 150, 196, 732, 1121, 1214
Hsp92II CATG 7 cut(s) 184, 192, 725, 790, 967, 1021, 1204
Kpn2I TCCGGA 1 cut(s) 340
KspAI GTTAAC 1 cut(s) 412
Kzo9I GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
LguI GCTCTTC 1 cut(s) 816
LmnI GCTCC 4 cut(s) 502, 542, 573, 1253
Lsp1109I GCAGC 8 cut(s) 139, 382, 683, 760, 791, 794, 843, 1239
LweI GCATC 2 cut(s) 498, 1047
MaeI CTAG 1 cut(s) 375
MaeII ACGT 5 cut(s) 150, 196, 732, 1121, 1214
MaeIII GTNAC 5 cut(s) 58, 197, 889, 1151, 1158
MalI GATC 7 cut(s) 51, 116, 345, 452, 485, 941, 1259
MbiI CCGCTC 2 cut(s) 568, 581
MboI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
MboII GAAGA 3 cut(s) 566, 833, 1057
MflI RGATCY 1 cut(s) 450
MhlI GDGCHC 3 cut(s) 46, 547, 1090
MluCI AATT 3 cut(s) 640, 1180, 1273
MlyI GAGTC 4 cut(s) 14, 323, 422, 588
MmeI TCCRAC 4 cut(s) 238, 708, 1125, 1142
Mph1103I ATGCAT 1 cut(s) 1019
MroI TCCGGA 1 cut(s) 340
MseI TTAA 3 cut(s) 411, 836, 1276
MslI CAYNNNNRTG 2 cut(s) 266, 1236
MspI CCGG 3 cut(s) 74, 341, 1080
MspR9I CCNGG 2 cut(s) 75, 855
MvaI CCWGG 1 cut(s) 855
NciI CCSGG 1 cut(s) 75
NdeII GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 7 cut(s) 184, 192, 725, 790, 967, 1021, 1204
NlaIV GGNNCC 4 cut(s) 464, 532, 961, 1249
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 58, 889, 1151
NsiI ATGCAT 1 cut(s) 1019
NspI RCATGY 2 cut(s) 725, 1021
OliI CACNNNNGTG 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 816
PfeI GAWTC 5 cut(s) 250, 519, 995, 1048, 1127
PleI GAGTC 4 cut(s) 13, 322, 422, 588
PpsI GAGTC 4 cut(s) 13, 322, 422, 588
Ppu21I YACGTR 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 853
PspEI GGTNACC 1 cut(s) 1151
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 4 cut(s) 464, 532, 961, 1249
PspPI GGNCC 3 cut(s) 211, 960, 1115
PstI CTGCAG 2 cut(s) 129, 592
PsuI RGATCY 1 cut(s) 450
RsaI GTAC 1 cut(s) 392
RsaNI GTAC 1 cut(s) 391
RseI CAYNNNNRTG 2 cut(s) 266, 1236
SacI GAGCTC 1 cut(s) 547
SapI GCTCTTC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 411, 836, 1276
Sau3AI GATC 7 cut(s) 49, 114, 343, 450, 483, 939, 1257
Sau96I GGNCC 3 cut(s) 211, 960, 1115
SchI GAGTC 4 cut(s) 14, 323, 422, 588
ScrFI CCNGG 2 cut(s) 75, 855
SduI GDGCHC 3 cut(s) 46, 547, 1090
SfaNI GCATC 2 cut(s) 498, 1047
SfcI CTRYAG 2 cut(s) 125, 588
SinI GGWCC 3 cut(s) 211, 960, 1115
SmiMI CAYNNNNRTG 2 cut(s) 266, 1236
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 640, 1180, 1273
SsiI CCGC 9 cut(s) 487, 566, 579, 695, 738, 776, 876, 1083, 1251
SspI AATATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 375
SstI GAGCTC 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 73, 853
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 5 cut(s) 293, 841, 1031, 1100, 1108
TaiI ACGT 5 cut(s) 153, 199, 735, 1124, 1217
TaqI TCGA 4 cut(s) 110, 288, 1041, 1103
TasI AATT 3 cut(s) 640, 1180, 1273
TauI GCSGC 3 cut(s) 581, 698, 779
TfiI GAWTC 5 cut(s) 250, 519, 995, 1048, 1127
Tru1I TTAA 3 cut(s) 411, 836, 1276
Tru9I TTAA 3 cut(s) 411, 836, 1276
TscAI CASTG 2 cut(s) 531, 1036
TseFI GTSAC 3 cut(s) 58, 889, 1151
TseI GCWGC 8 cut(s) 127, 395, 671, 773, 779, 782, 831, 1227
Tsp45I GTSAC 3 cut(s) 58, 889, 1151
TspDTI ATGAA 5 cut(s) 82, 99, 603, 803, 980
TspRI CASTG 2 cut(s) 531, 1036
VneI GTGCAC 1 cut(s) 42
VpaK11BI GGWCC 3 cut(s) 211, 960, 1115
XceI RCATGY 2 cut(s) 725, 1021
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.