Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000734

Physical Location & Seq

Genomic Coordinates Reverse (-)

17978770 .. 17983496

Gene Structure 4727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAGCAAACACACCCCACACTCACTACAAGGCGGAAGACCAAAACTAAAAGTACTTCTACATCTAAGCTACAATAGCAACAAAGCCTCTCGCTTCAATGATGGACCAACATGGAGTCCTTGCCGAAGCTCTACCAAGTGCAACGGATCGGTTTGTGAGCAACAACGGCCGAGTACCGATGAATATATCCTTGAGAAAATTATTTCGACGATCAAGAAGCAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTTTACGCCGTTAAATGCAATCCACACCGGATCTCCTCGCTAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCCGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130

Pfam Domains

Protein Families

Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

147

Amino Acids

17.02

Weight (kDa)

9.44

Isoelectric Point (pI)

55.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000734)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g24730 FvH4_4g24750 FvH4_4g24750 FvH4_4g24751 FvH4_4g27890 FvH4_4g27890
malus_domestica	MD05G1034000.v1.1 MD05G1036600.v1.1
prunus_persica	Prupe.8G044900_v2.0.a1 Prupe.8G047700_v2.0.a1 Prupe.8G048000_v2.0.a1 Prupe.8G048200_v2.0.a1
pyrus_communis	pycom05g02700
rosa_chinensis	RchiOBHm_Chr3g0485801 RchiOBHm_Chr3g0485811 RchiOBHm_Chr3g0485831 RchiOBHm_Chr3g0485901 RchiOBHm_Chr3g0490321 RchiOBHm_Chr3g0490331 RchiOBHm_Chr4g0431831 RchiOBHm_Chr7g0227121
rosa_laevigata	RLG00000001667 RLG00000004654 RLG00000006885 RLG00000023124
rosa_multiflora	Rmu_co8388845.1_g000001 Rmu_sc0001459.1_g000007 Rmu_sc0001527.1_g000018 Rmu_sc0001863.1_g000009 Rmu_sc0002489.1_g000031 Rmu_sc0004876.1_g000007 Rmu_sc0004876.1_g000010 Rmu_sc0012870.1_g000009 Rmu_sc0028785.1_g000001 Rmu_ssc0000053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00232310 Rroxscaffold_6G00393560 Rroxscaffold_6G00393570 Rroxscaffold_6G00396220 Rroxscaffold_6G00396250
rosa_rugosa	Rorug03G0221900 Rorug04G0252500 Rorug07G0240700
rosa_samantha	Rh3AG270800 Rh3AG271000 Rh3AG292400 Rh3AG292500 Rh3BG306600 Rh3CG305100 Rh3CG305300 Rh3CG326600 Rh3CG326700 Rh3DG301100 Rh3DG301300 Rh3DG325700 Rh3DG325800 Rh4AG309400 Rh4BG316700 Rh4CG332000 Rh4DG311600 Rh7AG099200 Rh7AG390600 Rh7BG101000 Rh7BG101100 Rh7BG375500 Rh7CG409600 Rh7DG387900
rosa_wichuraiana	Rw0G002980 Rw3G024130 Rw3G025910 Rw4G026890 Rw7G032670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	432
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	3 cut(s)	154, 350, 443
AcoI	YGGCCR	1 cut(s)	167
AfaI	GTAC	2 cut(s)	54, 175
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	69, 129, 356
AluI	AGCT	3 cut(s)	69, 129, 356
AlwI	GGATC	3 cut(s)	154, 350, 443
Aor13HI	TCCGGA	1 cut(s)	432
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	104, 304
AsuNHI	GCTAGC	1 cut(s)	352
AvaII	GGWCC	2 cut(s)	104, 304
BbsI	GAAGAC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	2 cut(s)	95, 295
BceAI	ACGGC	2 cut(s)	182, 305
BciT130I	CCWGG	1 cut(s)	283
BfaI	CTAG	1 cut(s)	353
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BmcAI	AGTACT	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	104, 304
BmgT120I	GGNCC	2 cut(s)	104, 304
BmrFI	CCNGG	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	43
BpuEI	CTTGAG	2 cut(s)	212, 357
BsaAI	YACGTR	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	339, 432
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseAI	TCCGGA	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	167
BseXI	GCAGC	1 cut(s)	232
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	169
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	340, 433
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	1 cut(s)	169
Bsp13I	TCCGGA	1 cut(s)	432
Bsp143I	GATC	4 cut(s)	146, 210, 342, 435
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	1 cut(s)	169
BspEI	TCCGGA	1 cut(s)	432
BspOI	GCTAGC	1 cut(s)	356
BspPI	GGATC	3 cut(s)	154, 350, 443
BssMI	GATC	4 cut(s)	146, 210, 342, 435
Bst2UI	CCWGG	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	149, 213, 345, 438
BstMBI	GATC	4 cut(s)	146, 210, 342, 435
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 166
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	232
BstV2I	GAAGAC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BstZI	CGGCCG	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	104, 304
Csp6I	GTAC	2 cut(s)	53, 174
CviAII	CATG	3 cut(s)	111, 274, 367
CviJI	RGCY	8 cut(s)	69, 86, 129, 169, 356, 364, 371, 418
CviKI_1	RGCY	8 cut(s)	69, 86, 129, 169, 356, 364, 371, 418
CviQI	GTAC	2 cut(s)	53, 174
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	4 cut(s)	148, 212, 344, 437
DpnII	GATC	4 cut(s)	146, 210, 342, 435
EaeI	YGGCCR	1 cut(s)	167
EagI	CGGCCG	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	48
EclXI	CGGCCG	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	104, 304
Eco52I	CGGCCG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	281
FaeI	CATG	3 cut(s)	114, 277, 370
FaiI	YATR	5 cut(s)	112, 186, 275, 368, 442
FatI	CATG	3 cut(s)	110, 273, 366
Fnu4HI	GCNGC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	340, 433
Hin1II	CATG	3 cut(s)	114, 277, 370
HinfI	GANTC	2 cut(s)	115, 406
HpaII	CCGG	2 cut(s)	340, 433
Hpy188I	TCNGA	2 cut(s)	300, 399
Hpy188III	TCNNGA	2 cut(s)	214, 433
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	2 cut(s)	243, 289
HpyCH4V	TGCA	3 cut(s)	141, 330, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 166
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	2 cut(s)	243, 289
Hsp92II	CATG	3 cut(s)	114, 277, 370
Kpn2I	TCCGGA	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	146, 210, 342, 435
LpnPI	CCDG	4 cut(s)	233, 268, 295, 353
Lsp1109I	GCAGC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	2 cut(s)	243, 289
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	4 cut(s)	148, 212, 344, 437
MboI	GATC	4 cut(s)	146, 210, 342, 435
MboII	GAAGA	1 cut(s)	48
MflI	RGATCY	1 cut(s)	342
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	124, 415
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	97, 223, 281, 358
MroI	TCCGGA	1 cut(s)	432
MseI	TTAA	1 cut(s)	324
MspI	CCGG	2 cut(s)	340, 433
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MwoI	GCNNNNNNNGC	2 cut(s)	75, 166
NdeII	GATC	4 cut(s)	146, 210, 342, 435
NheI	GCTAGC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	114, 277, 370
NmeAIII	GCCGAG	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	2 cut(s)	123, 414
PpsI	GAGTC	2 cut(s)	123, 414
Ppu21I	YACGTR	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	104, 304
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	2 cut(s)	54, 175
RsaNI	GTAC	2 cut(s)	53, 174
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	4 cut(s)	146, 210, 342, 435
Sau96I	GGNCC	2 cut(s)	104, 304
ScaI	AGTACT	1 cut(s)	54
SchI	GAGTC	2 cut(s)	124, 415
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	8 cut(s)	71, 131, 246, 273, 284, 292, 297, 358
SinI	GGWCC	2 cut(s)	104, 304
SmlI	CTYRAG	2 cut(s)	191, 372
SmoI	CTYRAG	2 cut(s)	191, 372
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	1 cut(s)	281
TaiI	ACGT	2 cut(s)	246, 292
TaqI	TCGA	2 cut(s)	206, 380
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	159
VpaK11BI	GGWCC	2 cut(s)	104, 304
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.