RLG00000001667

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000734
Physical Location & Seq
Reverse (-)
18955317 .. 18956850
1534 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001667

Sequence Viewer

Length: 1263 bp
ATGGAGTCCTTGCCTGAAGCTCTACTAAGTGCACCACATCAGTTTGTGAGCAACAACGGGCTGAGTACTGATGAATATTTCCTTGAGAAAATTATTTCGACGATCAAGAACCAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCAATGGTCCAACCCTTTTACGCTGTTAAATGCAATCCACACCCAGATCTCCTCGCCAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCTGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTTCGGATCGCATAATCTATGCAAATCCCTGTAAAGCTAGCTCTCACATCAAGTACGCTGCCAAAGTTGGCGTTAATCTAATGACTTTCGACTCAGTATATGAAGTTGAAAAGATAAAAAAATACCACCCTAACTGTTCTTTACTTATCCGCATCAAAGCTCCGGACGAAAGTGGGTGCATGTGGACAACGAGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCCTCGCTTCTCCAAGCCGCTCAAATTGTAGGACTCGAAGTTGCAGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCGTACAGAACAGCTATAGAGGCAGCTAAGGCAGTTTTTCAGGAGGCGGCCAGGCTCTGCATGGCTCCCATGTATGTGTTAAACATTGGCGGCGGCTTCGTGTCTGAGCCATCGTTATTTGAAGATGCAGCGTCAGCCGTGAAAACCGCTGTGGAGACATATTTTTCAGAGGAAGAGCGACGCAACTTAACAGTGATAGCCGAGCCAGGTCGGTTTTTTGTAGAGACAGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACACTACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCGTGCGGACCCTAGAACCCTACTTGAATCGTGCATTGCTCTAAAATGCATGTCCAATAACAGTGATGGCGACGAGAAAAATCCAGCCATAATGGTACGTGGCAAAAGTACTTGTGGTGCTCGCACTTATATTTCGATTGTGTTTGGTCCAACGTGTGATCCGGTTGACAAGGTGTTGGGCGGTGAGCAGCTACCAGAACTTGAGGTGAATGATTGGCTAGTGTTTCAGAATATGGGTGCTTATACGTCGGCATGTAGCAACAACTTTAATGGTTTTGGCTCAGGCAAGATCACCTACCTTACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

421

Amino Acids

46.16

Weight (kDa)

5.33

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 397 6.9e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 52 - 285 4.2e-70 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 8 cut(s) 472, 564, 680, 723, 726, 780, 959, 1134
AclWI GGATC 3 cut(s) 336, 932, 1106
AcoI YGGCCR 1 cut(s) 681
AcuI CTGAAG 2 cut(s) 36, 558
AfaI GTAC 5 cut(s) 67, 377, 638, 1050, 1063
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 1106
AgsI TTSAA 3 cut(s) 431, 755, 980
AjnI CCWGG 3 cut(s) 173, 683, 838
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
AluBI AGCT 9 cut(s) 20, 249, 359, 363, 482, 647, 659, 863, 1144
AluI AGCT 9 cut(s) 20, 249, 359, 363, 482, 647, 659, 863, 1144
Alw21I GWGCWC 3 cut(s) 34, 532, 1075
Alw26I GTCTC 2 cut(s) 782, 851
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 3 cut(s) 336, 932, 1106
AlwNI CAGNNNCTG 1 cut(s) 690
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 1 cut(s) 681
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 4 cut(s) 380, 656, 761, 1141
AspS9I GGNCC 4 cut(s) 196, 945, 961, 1100
AsuHPI GGTGA 4 cut(s) 868, 1148, 1171, 1237
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 4 cut(s) 196, 945, 961, 1100
BaeGI GKGCMC 1 cut(s) 34
Bbv12I GWGCWC 3 cut(s) 34, 532, 1075
BbvI GCAGC 4 cut(s) 367, 668, 773, 1153
BccI CCATC 2 cut(s) 751, 1013
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 3 cut(s) 175, 685, 840
BcoDI GTCTC 2 cut(s) 782, 851
BfaI CTAG 3 cut(s) 360, 966, 1172
BfmI CTRYAG 1 cut(s) 648
BglII AGATCT 1 cut(s) 235
BisI GCNGC 8 cut(s) 381, 564, 657, 681, 724, 727, 762, 1142
BlsI GCNGC 8 cut(s) 382, 565, 658, 682, 725, 728, 763, 1143
BmcAI AGTACT 2 cut(s) 67, 1063
Bme1390I CCNGG 3 cut(s) 175, 685, 840
Bme18I GGWCC 4 cut(s) 196, 945, 961, 1100
BmgT120I GGNCC 4 cut(s) 196, 945, 961, 1100
BmiI GGNNCC 3 cut(s) 699, 946, 963
BmrFI CCNGG 3 cut(s) 175, 685, 840
BmsI GCATC 3 cut(s) 483, 748, 942
BmtI GCTAGC 1 cut(s) 363
Bpu10I CCTNAGC 2 cut(s) 660, 1234
BpuEI CTTGAG 4 cut(s) 104, 250, 615, 1175
BsaAI YACGTR 2 cut(s) 136, 1052
BsaWI WCCGGW 2 cut(s) 484, 1114
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 3 cut(s) 175, 685, 840
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 5 cut(s) 53, 282, 429, 729, 1248
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 4 cut(s) 367, 668, 773, 1153
BshFI GGCC 1 cut(s) 683
BsiHKAI GWGCWC 3 cut(s) 34, 532, 1075
BsiSI CCGG 2 cut(s) 485, 1115
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 782, 851
BsmFI GGGAC 1 cut(s) 604
BsnI GGCC 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 34, 532, 1075
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
BspACI CCGC 8 cut(s) 472, 564, 680, 723, 726, 780, 959, 1134
BspANI GGCC 1 cut(s) 683
BspCNI CTCAG 5 cut(s) 54, 283, 428, 730, 1247
BspEI TCCGGA 1 cut(s) 484
BspLI GGNNCC 3 cut(s) 699, 946, 963
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 3 cut(s) 336, 932, 1106
BspQI GCTCTTC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 1 cut(s) 926
BssMI GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
Bst2UI CCWGG 3 cut(s) 175, 685, 840
Bst4CI ACNGT 3 cut(s) 458, 826, 1016
Bst6I CTCTTC 1 cut(s) 801
BstBAI YACGTR 2 cut(s) 136, 1052
BstC8I GCNNGC 4 cut(s) 247, 361, 957, 1075
BstDEI CTNAG 7 cut(s) 26, 62, 291, 415, 660, 738, 1234
BstKTI GATC 6 cut(s) 105, 238, 331, 927, 1114, 1245
BstMAI GTCTC 2 cut(s) 782, 851
BstMBI GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
BstMWI GCNNNNNNNGC 3 cut(s) 653, 662, 767
BstNI CCWGG 3 cut(s) 175, 685, 840
BstNSI RCATGY 3 cut(s) 505, 1006, 1209
BstSCI CCNGG 3 cut(s) 173, 683, 838
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 34
BstV1I GCAGC 4 cut(s) 367, 668, 773, 1153
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 683
BtsIMutI CAGTG 2 cut(s) 831, 1021
Cac8I GCNNGC 4 cut(s) 247, 361, 957, 1075
CaiI CAGNNNCTG 1 cut(s) 690
Cfr13I GGNCC 4 cut(s) 196, 945, 961, 1100
CseI GACGC 2 cut(s) 753, 822
Csp6I GTAC 5 cut(s) 66, 376, 637, 1049, 1062
CviAII CATG 8 cut(s) 166, 260, 502, 694, 703, 949, 1003, 1206
CviQI GTAC 5 cut(s) 66, 376, 637, 1049, 1062
DdeI CTNAG 7 cut(s) 26, 62, 291, 415, 660, 738, 1234
DpnI GATC 6 cut(s) 104, 237, 330, 926, 1113, 1244
DpnII GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco47I GGWCC 4 cut(s) 196, 945, 961, 1100
Eco57I CTGAAG 2 cut(s) 36, 558
EcoRII CCWGG 3 cut(s) 173, 683, 838
EcoT22I ATGCAT 1 cut(s) 1004
FaeI CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
FaqI GGGAC 1 cut(s) 604
FatI CATG 8 cut(s) 165, 259, 501, 693, 702, 948, 1002, 1205
Fnu4HI GCNGC 8 cut(s) 381, 564, 657, 681, 724, 727, 762, 1142
Fsp4HI GCNGC 8 cut(s) 381, 564, 657, 681, 724, 727, 762, 1142
FspBI CTAG 3 cut(s) 360, 966, 1172
GluI GCNGC 8 cut(s) 381, 564, 657, 681, 724, 727, 762, 1142
HaeIII GGCC 1 cut(s) 683
HapII CCGG 2 cut(s) 485, 1115
HgaI GACGC 2 cut(s) 753, 822
Hin1II CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
HincII GTYRAC 1 cut(s) 1120
HindII GTYRAC 1 cut(s) 1120
HinfI GANTC 5 cut(s) 5, 299, 413, 579, 980
HpaII CCGG 2 cut(s) 485, 1115
HphI GGTGA 4 cut(s) 868, 1148, 1171, 1237
Hpy166II GTNNAC 3 cut(s) 32, 507, 1120
Hpy188I TCNGA 6 cut(s) 292, 328, 739, 802, 914, 1182
Hpy188III TCNNGA 4 cut(s) 106, 485, 674, 889
Hpy8I GTNNAC 3 cut(s) 32, 507, 1120
Hpy99I CGWCG 4 cut(s) 103, 816, 1028, 1204
HpyAV CCTTC 2 cut(s) 197, 926
HpyCH4III ACNGT 3 cut(s) 458, 826, 1016
HpyCH4IV ACGT 5 cut(s) 135, 181, 1051, 1106, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 662, 767
HpyF3I CTNAG 7 cut(s) 26, 62, 291, 415, 660, 738, 1234
HpySE526I ACGT 5 cut(s) 135, 181, 1051, 1106, 1199
Hsp92II CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
Kpn2I TCCGGA 1 cut(s) 484
Kzo9I GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 487, 703
Lsp1109I GCAGC 4 cut(s) 367, 668, 773, 1153
LweI GCATC 3 cut(s) 483, 748, 942
MaeI CTAG 3 cut(s) 360, 966, 1172
MaeII ACGT 5 cut(s) 135, 181, 1051, 1106, 1199
MaeIII GTNAC 2 cut(s) 182, 874
MalI GATC 6 cut(s) 104, 237, 330, 926, 1113, 1244
MbiI CCGCTC 1 cut(s) 566
MboI GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
MboII GAAGA 4 cut(s) 315, 551, 767, 818
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 34, 532, 1075
MluCI AATT 3 cut(s) 90, 570, 625
MlyI GAGTC 4 cut(s) 14, 308, 407, 573
MmeI TCCRAC 2 cut(s) 223, 1127
Mph1103I ATGCAT 1 cut(s) 1004
MroI TCCGGA 1 cut(s) 484
MseI TTAA 5 cut(s) 216, 396, 713, 821, 1221
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 2 cut(s) 485, 1115
MspR9I CCNGG 3 cut(s) 175, 685, 840
MvaI CCWGG 3 cut(s) 175, 685, 840
MwoI GCNNNNNNNGC 3 cut(s) 653, 662, 767
NdeII GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
NlaIV GGNNCC 3 cut(s) 699, 946, 963
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 874
NsiI ATGCAT 1 cut(s) 1004
NspI RCATGY 3 cut(s) 505, 1006, 1209
PciSI GCTCTTC 1 cut(s) 801
PfeI GAWTC 1 cut(s) 980
PkrI GCNGC 8 cut(s) 382, 565, 658, 682, 725, 728, 763, 1143
PleI GAGTC 4 cut(s) 13, 307, 407, 573
PpsI GAGTC 4 cut(s) 13, 307, 407, 573
Ppu21I YACGTR 2 cut(s) 136, 1052
Psp6I CCWGG 3 cut(s) 173, 683, 838
PspGI CCWGG 3 cut(s) 173, 683, 838
PspN4I GGNNCC 3 cut(s) 699, 946, 963
PspPI GGNCC 4 cut(s) 196, 945, 961, 1100
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 5 cut(s) 67, 377, 638, 1050, 1063
RsaNI GTAC 5 cut(s) 66, 376, 637, 1049, 1062
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 5 cut(s) 216, 396, 713, 821, 1221
SatI GCNGC 8 cut(s) 381, 564, 657, 681, 724, 727, 762, 1142
Sau3AI GATC 6 cut(s) 102, 235, 328, 924, 1111, 1242
Sau96I GGNCC 4 cut(s) 196, 945, 961, 1100
ScaI AGTACT 2 cut(s) 67, 1063
SchI GAGTC 4 cut(s) 14, 308, 407, 573
ScrFI CCNGG 3 cut(s) 175, 685, 840
SduI GDGCHC 3 cut(s) 34, 532, 1075
SfaNI GCATC 3 cut(s) 483, 748, 942
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 4 cut(s) 196, 945, 961, 1100
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 4 cut(s) 83, 265, 630, 1154
SmoI CTYRAG 4 cut(s) 83, 265, 630, 1154
Sse9I AATT 3 cut(s) 90, 570, 625
SsiI CCGC 8 cut(s) 472, 564, 680, 723, 726, 780, 959, 1134
SspI AATATT 1 cut(s) 77
SspMI CTAG 3 cut(s) 360, 966, 1172
StyD4I CCNGG 3 cut(s) 173, 683, 838
TaaI ACNGT 3 cut(s) 458, 826, 1016
TaiI ACGT 5 cut(s) 138, 184, 1054, 1109, 1202
TaqI TCGA 5 cut(s) 98, 273, 411, 582, 1088
TasI AATT 3 cut(s) 90, 570, 625
TatI WGTACW 2 cut(s) 65, 1061
TauI GCSGC 4 cut(s) 566, 683, 726, 729
TfiI GAWTC 1 cut(s) 980
Tru1I TTAA 5 cut(s) 216, 396, 713, 821, 1221
Tru9I TTAA 5 cut(s) 216, 396, 713, 821, 1221
TscAI CASTG 2 cut(s) 831, 1021
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 4 cut(s) 380, 656, 761, 1141
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 2 cut(s) 87, 438
TspRI CASTG 2 cut(s) 831, 1021
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 4 cut(s) 196, 945, 961, 1100
XceI RCATGY 3 cut(s) 505, 1006, 1209
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XspI CTAG 3 cut(s) 360, 966, 1172
ZrmI AGTACT 2 cut(s) 67, 1063
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.