FvH4_4g24751

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000734
Physical Location & Seq
Reverse (-)
26776626 .. 26778557
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24751.t1

Sequence Viewer

Length: 1260 bp
ATGGAGGCCTTGCTCGAATCTCTACTAAGTGCACCGGATCAGTTCTTGAGCAGTAACGGATTGAAGATTGATGAATGTTTCTCTGAGAAGATCATTTCGACAATCAAGAATCATCAAAGTGAGGAAGCATTTTACATGCTGGATTTGGGTGTTGTCGCAAACCTCATGGATACCTGGAAACGAAATCTTCCAATGGTCCAACCCTTCTACGCTGTTAAGTGCAATACACATCCGGATCTCCTCGCCACCATGGTGGCTCATGGCTCCAGTTTCGACTGTGCAAGTCGGTCCGAGATTGAATCCATTTTGGCTCTGGGGGTTTCTCCGGATCACATTATCTATGCTAATCCCTGTAAAGCTAGCTCTCACATCAAGTACGCTGCTAAAGTTGGCGTTAACCTAACCACTGTCGACTCACTGGATGAGATTGAGAAGATCCGGAAATTGCACCCAAAAGGTTCTTTACTGATCCGCATTAAAGCTCCGGACGAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTACCTCAACTCCTCCAAGCCGCTCAAACTGCAGGACTCAAAGTTTCCGGGGTGGCATTTCACATAGGGAGCAAATCCCGCAATTCTCAGGCATACAAAACAGCCATACAGGCAGCTAAGGCGGTTTTTCAAGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAATATTGGCGGTGGCTTCGTCTCCGATGCATTGTGCTTTGAAGCTGCGGCAGAAGCCGTGAAAACTGCCGTGCACAGGTATTTTTCAGAAGAGGAGCGACGCAGCTTAACTGTGATTGCCGAGCCCGGTCGGTTCTTTGCAGAGACGGCTTTCACGCTTGCCACCAATATCATCGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGCTCAACGAAGGGTTCCATGGCTCCATGATGCGTGTGGATCGCGCTGCGCTAGTTCGATCCTGCATTTCTCTTAAATGCATGTCCAATAACAATGGTAACGACAATGAGAAGAACCCAGGCATGATGGTAATGCATGACGGTGGTGCTCGCACTTTCAGTTCGATTGTGTTTGGTCCGACGTGCGATCCGATTGACAAGGTGTCGGAGGGTCACCAATTACCTGAACTAGAGGTGAATGATTGGTTGGTGTTTCGGAATATGGGTGCTTATACCTTATCGTGTAGCAACAACTTCAATGGTTTTAGCTCAGCCAAGATCACCTACCTTACTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

420

Amino Acids

46.05

Weight (kDa)

6.51

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 52 - 285 8.3e-68 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 197 - 396 1.9e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 492
AccBSI CCGCTC 1 cut(s) 566
AccI GTMKAC 1 cut(s) 411
AccII CGCG 1 cut(s) 966
AccIII TCCGGA 4 cut(s) 232, 325, 438, 484
AciI CCGC 7 cut(s) 472, 564, 622, 665, 680, 723, 761
AclWI GGATC 8 cut(s) 45, 243, 336, 430, 463, 969, 975, 1103
AcoI YGGCCR 1 cut(s) 506
AfaI GTAC 3 cut(s) 377, 524, 546
AfiI CCNNNNNNNGG 1 cut(s) 789
AgsI TTSAA 6 cut(s) 64, 299, 674, 715, 755, 1219
AhdI GACNNNNNGTC 1 cut(s) 1123
AjiI CACGTC 1 cut(s) 1104
AjnI CCWGG 2 cut(s) 173, 1039
AjuI GAANNNNNNNTTGG 2 cut(s) 1151, 1183
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 7 cut(s) 359, 363, 482, 659, 758, 819, 1230
AluI AGCT 7 cut(s) 359, 363, 482, 659, 758, 819, 1230
Alw21I GWGCWC 4 cut(s) 34, 532, 789, 1072
Alw26I GTCTC 2 cut(s) 739, 851
Alw44I GTGCAC 2 cut(s) 30, 785
AlwI GGATC 8 cut(s) 45, 243, 336, 430, 463, 969, 975, 1103
Aor13HI TCCGGA 4 cut(s) 232, 325, 438, 484
AoxI GGCC 2 cut(s) 6, 506
ApaLI GTGCAC 2 cut(s) 30, 785
ApeKI GCWGC 5 cut(s) 380, 656, 758, 816, 968
AspLEI GCGC 2 cut(s) 968, 973
AspS9I GGNCC 3 cut(s) 196, 288, 1097
AsuC2I CCSGG 2 cut(s) 592, 840
AsuHPI GGTGA 3 cut(s) 1127, 1168, 1234
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 3 cut(s) 196, 288, 1097
BaeGI GKGCMC 2 cut(s) 34, 789
BalI TGGCCA 1 cut(s) 508
BanII GRGCYC 1 cut(s) 840
Bbv12I GWGCWC 4 cut(s) 34, 532, 789, 1072
BbvI GCAGC 5 cut(s) 367, 668, 745, 828, 955
BccI CCATC 1 cut(s) 1042
BceAI ACGGC 3 cut(s) 755, 767, 876
BciT130I CCWGG 2 cut(s) 175, 1041
BciVI GTATCC 1 cut(s) 163
BcnI CCSGG 2 cut(s) 592, 840
BcoDI GTCTC 2 cut(s) 739, 851
BfaI CTAG 3 cut(s) 360, 974, 1151
BfmI CTRYAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 492
BfuI GTATCC 1 cut(s) 163
BglI GCCNNNNNGGC 1 cut(s) 653
BisI GCNGC 7 cut(s) 381, 564, 657, 759, 762, 817, 969
BlpI GCTNAGC 1 cut(s) 1231
BlsI GCNGC 7 cut(s) 382, 565, 658, 760, 763, 818, 970
Bme1390I CCNGG 4 cut(s) 175, 592, 840, 1041
Bme18I GGWCC 3 cut(s) 196, 288, 1097
BmeRI GACNNNNNGTC 1 cut(s) 1123
BmgBI CACGTC 1 cut(s) 1104
BmgT120I GGNCC 3 cut(s) 196, 288, 1097
BmiI GGNNCC 3 cut(s) 265, 938, 946
BmrFI CCNGG 4 cut(s) 175, 592, 840, 1041
BmsI GCATC 2 cut(s) 730, 942
BmtI GCTAGC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 660
Bpu1102I GCTNAGC 1 cut(s) 1231
BpuEI CTTGAG 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 592, 840
BsaJI CCNNGG 4 cut(s) 249, 591, 940, 1039
BsaWI WCCGGW 5 cut(s) 34, 232, 325, 438, 484
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 789
Bse1I ACTGG 3 cut(s) 267, 423, 926
BseAI TCCGGA 4 cut(s) 232, 325, 438, 484
BseBI CCWGG 2 cut(s) 175, 1041
BseDI CCNNGG 4 cut(s) 249, 591, 940, 1039
BseGI GGATG 2 cut(s) 229, 427
BseLI CCNNNNNNNGG 1 cut(s) 789
BseMII CTCAG 3 cut(s) 75, 644, 1245
BseNI ACTGG 3 cut(s) 267, 423, 926
BseRI GAGGAG 3 cut(s) 230, 545, 821
BseSI GKGCMC 2 cut(s) 34, 789
BseXI GCAGC 5 cut(s) 367, 668, 745, 828, 955
Bsh1236I CGCG 1 cut(s) 966
Bsh1285I CGRYCG 1 cut(s) 844
BshFI GGCC 2 cut(s) 8, 508
BsiEI CGRYCG 1 cut(s) 844
BsiHKAI GWGCWC 4 cut(s) 34, 532, 789, 1072
BsiSI CCGG 7 cut(s) 35, 233, 326, 439, 485, 591, 840
BslI CCNNNNNNNGG 1 cut(s) 789
BsmAI GTCTC 2 cut(s) 739, 851
BsmBI CGTCTC 2 cut(s) 739, 851
BsnI GGCC 2 cut(s) 8, 508
Bsp1286I GDGCHC 5 cut(s) 34, 532, 789, 840, 1072
Bsp13I TCCGGA 4 cut(s) 232, 325, 438, 484
Bsp1720I GCTNAGC 1 cut(s) 1231
Bsp19I CCATGG 2 cut(s) 249, 940
BspACI CCGC 7 cut(s) 472, 564, 622, 665, 680, 723, 761
BspANI GGCC 2 cut(s) 8, 508
BspCNI CTCAG 3 cut(s) 76, 643, 1244
BspEI TCCGGA 4 cut(s) 232, 325, 438, 484
BspFNI CGCG 1 cut(s) 966
BspLI GGNNCC 3 cut(s) 265, 938, 946
BspMAI CTGCAG 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 492
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 8 cut(s) 45, 243, 336, 430, 463, 969, 975, 1103
BspQI GCTCTTC 1 cut(s) 537
BsrBI CCGCTC 1 cut(s) 566
BsrI ACTGG 3 cut(s) 267, 423, 926
BssECI CCNNGG 4 cut(s) 249, 591, 940, 1039
BssT1I CCWWGG 2 cut(s) 249, 940
Bst2UI CCWGG 2 cut(s) 175, 1041
Bst4CI ACNGT 5 cut(s) 278, 409, 527, 826, 1064
Bst6I CTCTTC 2 cut(s) 537, 798
BstC8I GCNNGC 4 cut(s) 361, 695, 873, 1072
BstDEI CTNAG 5 cut(s) 26, 84, 630, 660, 1231
BstDSI CCRYGG 2 cut(s) 249, 940
BstEII GGTNACC 1 cut(s) 1133
BstF5I GGATG 2 cut(s) 229, 427
BstFNI CGCG 1 cut(s) 966
BstHHI GCGC 2 cut(s) 968, 973
BstMAI GTCTC 2 cut(s) 739, 851
BstMCI CGRYCG 1 cut(s) 844
BstMWI GCNNNNNNNGC 8 cut(s) 572, 621, 653, 662, 694, 703, 767, 860
BstNI CCWGG 2 cut(s) 175, 1041
BstNSI RCATGY 4 cut(s) 139, 697, 710, 1006
BstPI GGTNACC 1 cut(s) 1133
BstSCI CCNGG 4 cut(s) 173, 590, 838, 1039
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 2 cut(s) 34, 789
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 5 cut(s) 367, 668, 745, 828, 955
BstX2I RGATCY 2 cut(s) 235, 435
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 2 cut(s) 235, 435
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 2 cut(s) 8, 508
BtgI CCRYGG 2 cut(s) 249, 940
BtrI CACGTC 1 cut(s) 1104
BtsCI GGATG 2 cut(s) 229, 427
BtsIMutI CAGTG 2 cut(s) 405, 416
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 4 cut(s) 361, 695, 873, 1072
CfoI GCGC 2 cut(s) 968, 973
Cfr13I GGNCC 3 cut(s) 196, 288, 1097
CpoI CGGWCCG 1 cut(s) 288
CseI GACGC 1 cut(s) 822
Csp6I GTAC 3 cut(s) 376, 523, 545
CspI CGGWCCG 1 cut(s) 288
CviQI GTAC 3 cut(s) 376, 523, 545
DdeI CTNAG 5 cut(s) 26, 84, 630, 660, 1231
DriI GACNNNNNGTC 1 cut(s) 1123
EaeI YGGCCR 1 cut(s) 506
Eam1104I CTCTTC 2 cut(s) 537, 798
Eam1105I GACNNNNNGTC 1 cut(s) 1123
EarI CTCTTC 2 cut(s) 537, 798
EciI GGCGGA 1 cut(s) 695
Eco130I CCWWGG 2 cut(s) 249, 940
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 840
Eco47I GGWCC 3 cut(s) 196, 288, 1097
Eco91I GGTNACC 1 cut(s) 1133
EcoO65I GGTNACC 1 cut(s) 1133
EcoRII CCWGG 2 cut(s) 173, 1039
EcoT14I CCWWGG 2 cut(s) 249, 940
EcoT22I ATGCAT 4 cut(s) 708, 745, 1004, 1059
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 2 cut(s) 249, 940
Esp3I CGTCTC 2 cut(s) 739, 851
FauI CCCGC 1 cut(s) 629
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 7 cut(s) 381, 564, 657, 759, 762, 817, 969
FokI GGATG 2 cut(s) 216, 434
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 7 cut(s) 381, 564, 657, 759, 762, 817, 969
FspBI CTAG 3 cut(s) 360, 974, 1151
GlaI GCGC 2 cut(s) 967, 972
GluI GCNGC 7 cut(s) 381, 564, 657, 759, 762, 817, 969
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 2 cut(s) 8, 508
HapII CCGG 7 cut(s) 35, 233, 326, 439, 485, 591, 840
HgaI GACGC 1 cut(s) 822
HhaI GCGC 2 cut(s) 968, 973
Hin6I GCGC 2 cut(s) 966, 971
HinP1I GCGC 2 cut(s) 966, 971
HincII GTYRAC 2 cut(s) 397, 412
HindII GTYRAC 2 cut(s) 397, 412
HinfI GANTC 5 cut(s) 17, 109, 299, 413, 579
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 7 cut(s) 35, 233, 326, 439, 485, 591, 840
HphI GGTGA 3 cut(s) 1127, 1168, 1234
Hpy166II GTNNAC 4 cut(s) 32, 397, 412, 787
Hpy188I TCNGA 9 cut(s) 85, 292, 739, 802, 914, 1101, 1113, 1129, 1179
Hpy188III TCNNGA 9 cut(s) 46, 106, 233, 326, 439, 485, 536, 674, 889
Hpy8I GTNNAC 4 cut(s) 32, 397, 412, 787
Hpy99I CGWCG 2 cut(s) 816, 1105
HpyAV CCTTC 2 cut(s) 214, 926
HpyCH4III ACNGT 5 cut(s) 278, 409, 527, 826, 1064
HpyCH4IV ACGT 1 cut(s) 1103
HpyF10VI GCNNNNNNNGC 8 cut(s) 572, 621, 653, 662, 694, 703, 767, 860
HpyF3I CTNAG 5 cut(s) 26, 84, 630, 660, 1231
HpySE526I ACGT 1 cut(s) 1103
HspAI GCGC 2 cut(s) 966, 971
Kpn2I TCCGGA 4 cut(s) 232, 325, 438, 484
KspAI GTTAAC 1 cut(s) 397
LguI GCTCTTC 1 cut(s) 537
LmnI GCTCC 6 cut(s) 269, 487, 498, 612, 808, 950
Lsp1109I GCAGC 5 cut(s) 367, 668, 745, 828, 955
LweI GCATC 2 cut(s) 730, 942
MaeI CTAG 3 cut(s) 360, 974, 1151
MaeII ACGT 1 cut(s) 1103
MaeIII GTNAC 3 cut(s) 53, 1019, 1133
MbiI CCGCTC 1 cut(s) 566
MboII GAAGA 8 cut(s) 76, 100, 179, 445, 524, 551, 815, 1045
MflI RGATCY 2 cut(s) 235, 435
MhlI GDGCHC 5 cut(s) 34, 532, 789, 840, 1072
MlsI TGGCCA 1 cut(s) 508
MluCI AATT 3 cut(s) 443, 625, 1139
MluNI TGGCCA 1 cut(s) 508
MlyI GAGTC 2 cut(s) 407, 573
MmeI TCCRAC 3 cut(s) 223, 1107, 1124
Mox20I TGGCCA 1 cut(s) 508
Mph1103I ATGCAT 4 cut(s) 708, 745, 1004, 1059
MroI TCCGGA 4 cut(s) 232, 325, 438, 484
MscI TGGCCA 1 cut(s) 508
MseI TTAA 5 cut(s) 216, 396, 477, 821, 996
MslI CAYNNNNRTG 4 cut(s) 117, 251, 707, 1062
Msp20I TGGCCA 1 cut(s) 508
MspI CCGG 7 cut(s) 35, 233, 326, 439, 485, 591, 840
MspR9I CCNGG 4 cut(s) 175, 592, 840, 1041
MteI GCGCNGCGC 1 cut(s) 969
MvaI CCWGG 2 cut(s) 175, 1041
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 8 cut(s) 572, 621, 653, 662, 694, 703, 767, 860
NciI CCSGG 2 cut(s) 592, 840
NcoI CCATGG 2 cut(s) 249, 940
NheI GCTAGC 1 cut(s) 359
NlaIV GGNNCC 3 cut(s) 265, 938, 946
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 1133
NsiI ATGCAT 4 cut(s) 708, 745, 1004, 1059
NspI RCATGY 4 cut(s) 139, 697, 710, 1006
OliI CACNNNNGTG 1 cut(s) 251
PaeI GCATGC 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 492
PceI AGGCCT 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 1109
PfeI GAWTC 3 cut(s) 17, 109, 299
PkrI GCNGC 7 cut(s) 382, 565, 658, 760, 763, 818, 970
PleI GAGTC 2 cut(s) 407, 573
PpsI GAGTC 2 cut(s) 407, 573
Psp6I CCWGG 2 cut(s) 173, 1039
PspEI GGTNACC 1 cut(s) 1133
PspGI CCWGG 2 cut(s) 173, 1039
PspN4I GGNNCC 3 cut(s) 265, 938, 946
PspPI GGNCC 3 cut(s) 196, 288, 1097
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 235, 435
RsaI GTAC 3 cut(s) 377, 524, 546
RsaNI GTAC 3 cut(s) 376, 523, 545
RseI CAYNNNNRTG 4 cut(s) 117, 251, 707, 1062
Rsr2I CGGWCCG 1 cut(s) 288
RsrII CGGWCCG 1 cut(s) 288
SalI GTCGAC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 537
SaqAI TTAA 5 cut(s) 216, 396, 477, 821, 996
SatI GCNGC 7 cut(s) 381, 564, 657, 759, 762, 817, 969
Sau96I GGNCC 3 cut(s) 196, 288, 1097
SchI GAGTC 2 cut(s) 407, 573
ScrFI CCNGG 4 cut(s) 175, 592, 840, 1041
SduI GDGCHC 5 cut(s) 34, 532, 789, 840, 1072
SfaNI GCATC 2 cut(s) 730, 942
SfcI CTRYAG 1 cut(s) 573
SinI GGWCC 3 cut(s) 196, 288, 1097
SmiMI CAYNNNNRTG 4 cut(s) 117, 251, 707, 1062
SmlI CTYRAG 1 cut(s) 46
SmoI CTYRAG 1 cut(s) 46
SphI GCATGC 1 cut(s) 697
Sse9I AATT 3 cut(s) 443, 625, 1139
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 7 cut(s) 472, 564, 622, 665, 680, 723, 761
SspI AATATT 1 cut(s) 718
SspMI CTAG 3 cut(s) 360, 974, 1151
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 173, 590, 838, 1039
StyI CCWWGG 2 cut(s) 249, 940
TaaI ACNGT 5 cut(s) 278, 409, 527, 826, 1064
TaiI ACGT 1 cut(s) 1106
TaqI TCGA 6 cut(s) 15, 98, 273, 411, 979, 1085
TaqII GACCGA 1 cut(s) 276
TasI AATT 3 cut(s) 443, 625, 1139
TauI GCSGC 2 cut(s) 566, 764
TfiI GAWTC 3 cut(s) 17, 109, 299
Tru1I TTAA 5 cut(s) 216, 396, 477, 821, 996
Tru9I TTAA 5 cut(s) 216, 396, 477, 821, 996
TscAI CASTG 2 cut(s) 412, 423
TseFI GTSAC 1 cut(s) 1133
TseI GCWGC 5 cut(s) 380, 656, 758, 816, 968
Tsp45I GTSAC 1 cut(s) 1133
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 2 cut(s) 412, 423
VneI GTGCAC 2 cut(s) 30, 785
VpaK11BI GGWCC 3 cut(s) 196, 288, 1097
XceI RCATGY 4 cut(s) 139, 697, 710, 1006
XcmI CCANNNNNNNNNTGG 2 cut(s) 310, 955
XmiI GTMKAC 1 cut(s) 411
XspI CTAG 3 cut(s) 360, 974, 1151
Zsp2I ATGCAT 4 cut(s) 708, 745, 1004, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.