Prupe.8G044900_v2.0.a1

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000734
Physical Location & Seq
Reverse (-)
4656120 .. 4657391
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G044900.1

Sequence Viewer

Length: 1272 bp
ATGGCATTGATCCTGCCAAGCATTCCCAGCCTTACCACCTTTAGCAGCCTACAAGTCAAGTTGGCTGCAAGCCAAGCGAAAGGTGATCAGCATGTTCCAGCTGACATACCTAGGCACCAACTTACCACCCTCATCAGATCCATCATCAACAAACAAGACGAACACGGACCATTTTACATTGTAGATTTGGGGGTTCTTGTCAGCCTCATGGAAAAATGGAACCATTGCCTTCCCAATGTTCAGCCCTTCTTTGCTGTCAAGTGTAACCATGAGCCTGCATTCATTGCTGCATTGGCAACACTTGGTGCAAGCTTTGATTGCGCCAGCAAGGCCGAGATTGAGGCCGTCTTTGCTCATGGCGTAAGCCCCACTAGAATTGTTTATGCCAATCCATGCAAGGGTGAGTACCATTTAAGGTACGCAGCTGGAGTCGGAGTCGATCTTGCAACCTTCGACTCCATGGACGAAGTTGATAAGATCAAAAGGTGCCACCCGAAATGTTCCTTGTTGCTTCGGATTGCTGTACCGAATGACAAGAGCTCGTGGCGTTCATTTGGGACCAAATTTGGTGCGTTGCGTGAGGAGGTTGCACCGCTCGTCAGACACGCACACAAACTAGGGTTAAGAGTGGTGGGAATTTCGTTCCATGTGGGATCAAAAGCGTCTGAATCTCAAGTGTACCGTGGAGCAATAGCTGCAGCTAGAGCTGCATTTGATGTGGCTGATGAGCTCAAAATGCCCAAAATGCATGTGCTTGATATTGGTGGTGGGTTCAAAGCAAATCAACTGTTTGATGAAATAGCCGAGACCATAAATGTTGCCATCAAAGACTACTTTTCTGATCATCAGTCAGATTCTGATCTGACGGTGATGGCTGAGCCAGGAAGGTTCTTTGCTGAAACTGCATTCACAATGGTTGCAAATGTGATGGGGAAGAGAGTGAGGGGAGAGAAAAGAGAGTATTGGATTAGTGATGGAATTTATGGGTCATTTAATCTTCCAGCATACGACAAATCCTCTATGCAAATCTCACCGCTCCAAATTCTAAGTCCTCACCAAAATCAAGTGACATATTCATCAACAGTTTTTGGGCCAACTTGTGATTCATTGGACACAGTTGTTGGTGACTGCATGCTGCCTGAATTAAAGTTGAATGATTATCTTGTGTTCCACAACATGGGCGCCTACACAACTTCTGCTGGAACCAACTTCAATGGCTTCTGCATTTCTGCTATTCCCACGTACCTGGCATTTACAAGTGCTAATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

424

Amino Acids

46.31

Weight (kDa)

6.43

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 114, 486, 1181
AccB7I CCANNNNNTGG 1 cut(s) 1177
AccBSI CCGCTC 2 cut(s) 595, 1036
AciI CCGC 2 cut(s) 593, 1034
AclWI GGATC 3 cut(s) 4, 132, 661
AcsI RAATTY 4 cut(s) 563, 636, 978, 1041
AcyI GRCGYC 1 cut(s) 1182
AdeI CACNNNGTG 1 cut(s) 305
AfaI GTAC 5 cut(s) 407, 419, 525, 680, 1244
AfiI CCNNNNNNNGG 2 cut(s) 398, 1177
AgsI TTSAA 3 cut(s) 775, 1153, 1213
AjnI CCWGG 2 cut(s) 880, 1245
AjuI GAANNNNNNNTTGG 2 cut(s) 1087, 1119
AluBI AGCT 8 cut(s) 101, 312, 425, 540, 695, 701, 707, 730
AluI AGCT 8 cut(s) 101, 312, 425, 540, 695, 701, 707, 730
Alw21I GWGCWC 2 cut(s) 542, 732
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 3 cut(s) 4, 132, 661
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 3 cut(s) 330, 342, 1091
ApeKI GCWGC 8 cut(s) 45, 65, 287, 422, 695, 698, 707, 1135
ApoI RAATTY 4 cut(s) 563, 636, 978, 1041
ArsI GACNNNNNNTTYG 2 cut(s) 1033, 1065
AspA2I CCTAGG 1 cut(s) 110
AspLEI GCGC 2 cut(s) 323, 1184
AspS9I GGNCC 3 cut(s) 167, 558, 1091
AsuHPI GGTGA 6 cut(s) 95, 413, 880, 1023, 1046, 1136
AvaII GGWCC 2 cut(s) 167, 558
AvrII CCTAGG 1 cut(s) 110
BanI GGYRCC 3 cut(s) 114, 486, 1181
BanII GRGCYC 2 cut(s) 542, 732
BauI CACGAG 1 cut(s) 541
Bbv12I GWGCWC 2 cut(s) 542, 732
BbvI GCAGC 8 cut(s) 52, 57, 274, 434, 682, 694, 710, 1122
BccI CCATC 5 cut(s) 149, 830, 865, 922, 968
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 882, 1247
BclI TGATCA 2 cut(s) 85, 841
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 4 cut(s) 111, 372, 617, 702
BfmI CTRYAG 1 cut(s) 696
BfoI RGCGCY 1 cut(s) 1185
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 8 cut(s) 46, 66, 288, 423, 696, 699, 708, 1136
BlnI CCTAGG 1 cut(s) 110
BlpI GCTNAGC 1 cut(s) 876
BlsI GCNGC 8 cut(s) 47, 67, 289, 424, 697, 700, 709, 1137
Bme1390I CCNGG 2 cut(s) 882, 1247
Bme18I GGWCC 2 cut(s) 167, 558
BmgT120I GGNCC 3 cut(s) 167, 558, 1091
BmiI GGNNCC 6 cut(s) 116, 221, 488, 559, 1183, 1204
BmrFI CCNGG 2 cut(s) 882, 1247
BpmI CTGGAG 1 cut(s) 447
Bpu1102I GCTNAGC 1 cut(s) 876
BpuEI CTTGAG 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 1242
BsaBI GATNNNNATC 1 cut(s) 858
BsaHI GRCGYC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 3 cut(s) 110, 459, 682
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 1177
Bse3DI GCAATG 2 cut(s) 223, 282
Bse8I GATNNNNATC 1 cut(s) 858
BseBI CCWGG 2 cut(s) 882, 1247
BseDI CCNNGG 3 cut(s) 110, 459, 682
BseJI GATNNNNATC 1 cut(s) 858
BseLI CCNNNNNNNGG 2 cut(s) 398, 1177
BseMI GCAATG 2 cut(s) 223, 282
BseMII CTCAG 1 cut(s) 867
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 8 cut(s) 52, 57, 274, 434, 682, 694, 710, 1122
BseYI CCCAGC 1 cut(s) 26
BshFI GGCC 3 cut(s) 332, 344, 1093
BshNI GGYRCC 3 cut(s) 114, 486, 1181
BsiHKAI GWGCWC 2 cut(s) 542, 732
BslFI GGGAC 1 cut(s) 571
BslI CCNNNNNNNGG 2 cut(s) 398, 1177
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 1 cut(s) 571
BsmI GAATGC 3 cut(s) 21, 278, 905
BsnI GGCC 3 cut(s) 332, 344, 1093
Bso31I GGTCTC 1 cut(s) 800
Bsp1286I GDGCHC 2 cut(s) 542, 732
Bsp143I GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
Bsp1720I GCTNAGC 1 cut(s) 876
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 593, 1034
BspANI GGCC 3 cut(s) 332, 344, 1093
BspCNI CTCAG 1 cut(s) 868
BspLI GGNNCC 6 cut(s) 116, 221, 488, 559, 1183, 1204
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 3 cut(s) 4, 132, 661
BspT107I GGYRCC 3 cut(s) 114, 486, 1181
BspTNI GGTCTC 1 cut(s) 800
BsrBI CCGCTC 2 cut(s) 595, 1036
BsrDI GCAATG 2 cut(s) 223, 282
BssECI CCNNGG 3 cut(s) 110, 459, 682
BssMI GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
BssNI GRCGYC 1 cut(s) 1182
BssSI CACGAG 1 cut(s) 541
BssT1I CCWWGG 2 cut(s) 110, 459
Bst2BI CACGAG 1 cut(s) 541
Bst2UI CCWGG 2 cut(s) 882, 1247
Bst4CI ACNGT 5 cut(s) 683, 789, 868, 1084, 1117
Bst6I CTCTTC 1 cut(s) 929
BstACI GRCGYC 1 cut(s) 1182
BstAPI GCANNNNNTGC 2 cut(s) 284, 695
BstBAI YACGTR 1 cut(s) 1242
BstC8I GCNNGC 5 cut(s) 70, 276, 310, 325, 1133
BstDEI CTNAG 2 cut(s) 876, 1046
BstDSI CCRYGG 2 cut(s) 459, 682
BstH2I RGCGCY 1 cut(s) 1185
BstHHI GCGC 2 cut(s) 323, 1184
BstKTI GATC 8 cut(s) 12, 88, 140, 442, 480, 656, 844, 862
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
BstNI CCWGG 2 cut(s) 882, 1247
BstNSI RCATGY 3 cut(s) 95, 752, 1135
BstSCI CCNGG 2 cut(s) 880, 1245
BstSFI CTRYAG 1 cut(s) 696
BstV1I GCAGC 8 cut(s) 52, 57, 274, 434, 682, 694, 710, 1122
BstX2I RGATCY 1 cut(s) 137
BstXI CCANNNNNNTGG 1 cut(s) 1246
BstYI RGATCY 1 cut(s) 137
BsuRI GGCC 3 cut(s) 332, 344, 1093
BtgI CCRYGG 2 cut(s) 459, 682
Cac8I GCNNGC 5 cut(s) 70, 276, 310, 325, 1133
CaiI CAGNNNCTG 1 cut(s) 857
CfoI GCGC 2 cut(s) 323, 1184
Cfr13I GGNCC 3 cut(s) 167, 558, 1091
CseI GACGC 1 cut(s) 651
Csp6I GTAC 5 cut(s) 406, 418, 524, 679, 1243
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 5 cut(s) 406, 418, 524, 679, 1243
DdeI CTNAG 2 cut(s) 876, 1046
DinI GGCGCC 1 cut(s) 1183
DpnI GATC 8 cut(s) 11, 87, 139, 441, 479, 655, 843, 861
DpnII GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
DraIII CACNNNGTG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 929
EarI CTCTTC 1 cut(s) 929
Ecl136II GAGCTC 2 cut(s) 540, 730
Eco130I CCWWGG 2 cut(s) 110, 459
Eco24I GRGCYC 2 cut(s) 542, 732
Eco31I GGTCTC 1 cut(s) 800
Eco47I GGWCC 2 cut(s) 167, 558
Eco53kI GAGCTC 2 cut(s) 540, 730
EcoICRI GAGCTC 2 cut(s) 540, 730
EcoRII CCWGG 2 cut(s) 880, 1245
EcoT14I CCWWGG 2 cut(s) 110, 459
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 2 cut(s) 542, 732
EgeI GGCGCC 1 cut(s) 1183
EheI GGCGCC 1 cut(s) 1183
ErhI CCWWGG 2 cut(s) 110, 459
FaqI GGGAC 1 cut(s) 571
FbaI TGATCA 2 cut(s) 85, 841
Fnu4HI GCNGC 8 cut(s) 46, 66, 288, 423, 696, 699, 708, 1136
FriOI GRGCYC 2 cut(s) 542, 732
Fsp4HI GCNGC 8 cut(s) 46, 66, 288, 423, 696, 699, 708, 1136
FspBI CTAG 4 cut(s) 111, 372, 617, 702
GlaI GCGC 2 cut(s) 322, 1183
GluI GCNGC 8 cut(s) 46, 66, 288, 423, 696, 699, 708, 1136
GsaI CCCAGC 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 447
HaeII RGCGCY 1 cut(s) 1185
HaeIII GGCC 3 cut(s) 332, 344, 1093
HgaI GACGC 1 cut(s) 651
HhaI GCGC 2 cut(s) 323, 1184
Hin1I GRCGYC 1 cut(s) 1182
Hin6I GCGC 2 cut(s) 321, 1182
HinP1I GCGC 2 cut(s) 321, 1182
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 6 cut(s) 429, 435, 455, 668, 854, 1103
HphI GGTGA 6 cut(s) 95, 413, 880, 1023, 1046, 1136
Hpy166II GTNNAC 1 cut(s) 679
Hpy188I TCNGA 9 cut(s) 137, 434, 516, 602, 667, 841, 853, 859, 864
Hpy8I GTNNAC 1 cut(s) 679
HpyAV CCTTC 4 cut(s) 239, 256, 460, 879
HpyCH4III ACNGT 5 cut(s) 683, 789, 868, 1084, 1117
HpyCH4IV ACGT 1 cut(s) 1241
HpyF3I CTNAG 2 cut(s) 876, 1046
HpySE526I ACGT 1 cut(s) 1241
Hsp92I GRCGYC 1 cut(s) 1182
HspAI GCGC 2 cut(s) 321, 1182
KasI GGCGCC 1 cut(s) 1181
Ksp22I TGATCA 2 cut(s) 85, 841
Kzo9I GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
LmnI GCTCC 2 cut(s) 686, 1041
Lsp1109I GCAGC 8 cut(s) 52, 57, 274, 434, 682, 694, 710, 1122
MaeI CTAG 4 cut(s) 111, 372, 617, 702
MaeII ACGT 1 cut(s) 1241
MaeIII GTNAC 3 cut(s) 263, 1066, 1124
MalI GATC 8 cut(s) 11, 87, 139, 441, 479, 655, 843, 861
MbiI CCGCTC 2 cut(s) 595, 1036
MboI GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
MboII GAAGA 2 cut(s) 946, 989
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 542, 732
MluCI AATT 7 cut(s) 375, 563, 636, 978, 1041, 1142, 1267
Mly113I GGCGCC 1 cut(s) 1182
MlyI GAGTC 3 cut(s) 438, 444, 449
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 8 cut(s) 140, 215, 334, 574, 577, 936, 1027, 1062
Mph1103I ATGCAT 1 cut(s) 750
MseI TTAA 5 cut(s) 413, 623, 993, 1145, 1270
MspA1I CMGCKG 2 cut(s) 101, 425
MspR9I CCNGG 2 cut(s) 882, 1247
Mva1269I GAATGC 3 cut(s) 21, 278, 905
MvaI CCWGG 2 cut(s) 882, 1247
NarI GGCGCC 1 cut(s) 1182
NcoI CCATGG 1 cut(s) 459
NdeII GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
NlaIV GGNNCC 6 cut(s) 116, 221, 488, 559, 1183, 1204
NmeAIII GCCGAG 2 cut(s) 358, 829
NmuCI GTSAC 2 cut(s) 1066, 1124
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 3 cut(s) 95, 752, 1135
PaeI GCATGC 1 cut(s) 1135
PctI GAATGC 3 cut(s) 21, 278, 905
PfeI GAWTC 3 cut(s) 668, 854, 1103
PflMI CCANNNNNTGG 1 cut(s) 1177
PkrI GCNGC 8 cut(s) 47, 67, 289, 424, 697, 700, 709, 1137
PleI GAGTC 3 cut(s) 437, 443, 449
PluTI GGCGCC 1 cut(s) 1185
PpsI GAGTC 3 cut(s) 437, 443, 449
Ppu21I YACGTR 1 cut(s) 1242
Psp124BI GAGCTC 2 cut(s) 542, 732
Psp6I CCWGG 2 cut(s) 880, 1245
PspFI CCCAGC 1 cut(s) 26
PspGI CCWGG 2 cut(s) 880, 1245
PspN4I GGNNCC 6 cut(s) 116, 221, 488, 559, 1183, 1204
PspPI GGNCC 3 cut(s) 167, 558, 1091
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 137
PvuII CAGCTG 2 cut(s) 101, 425
RsaI GTAC 5 cut(s) 407, 419, 525, 680, 1244
RsaNI GTAC 5 cut(s) 406, 418, 524, 679, 1243
SacI GAGCTC 2 cut(s) 542, 732
SaqAI TTAA 5 cut(s) 413, 623, 993, 1145, 1270
SatI GCNGC 8 cut(s) 46, 66, 288, 423, 696, 699, 708, 1136
Sau3AI GATC 8 cut(s) 9, 85, 137, 439, 477, 653, 841, 859
Sau96I GGNCC 3 cut(s) 167, 558, 1091
SchI GAGTC 3 cut(s) 438, 444, 449
ScrFI CCNGG 2 cut(s) 882, 1247
SduI GDGCHC 2 cut(s) 542, 732
SfcI CTRYAG 1 cut(s) 696
SfoI GGCGCC 1 cut(s) 1183
SinI GGWCC 2 cut(s) 167, 558
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
SphI GCATGC 1 cut(s) 1135
Sse9I AATT 7 cut(s) 375, 563, 636, 978, 1041, 1142, 1267
SsiI CCGC 2 cut(s) 593, 1034
SspDI GGCGCC 1 cut(s) 1181
SspMI CTAG 4 cut(s) 111, 372, 617, 702
SstI GAGCTC 2 cut(s) 542, 732
StyD4I CCNGG 2 cut(s) 880, 1245
StyI CCWWGG 2 cut(s) 110, 459
TaaI ACNGT 5 cut(s) 683, 789, 868, 1084, 1117
TaiI ACGT 1 cut(s) 1244
TaqI TCGA 2 cut(s) 438, 453
TasI AATT 7 cut(s) 375, 563, 636, 978, 1041, 1142, 1267
TfiI GAWTC 3 cut(s) 668, 854, 1103
Tru1I TTAA 5 cut(s) 413, 623, 993, 1145, 1270
Tru9I TTAA 5 cut(s) 413, 623, 993, 1145, 1270
TseFI GTSAC 2 cut(s) 1066, 1124
TseI GCWGC 8 cut(s) 45, 65, 287, 422, 695, 698, 707, 1135
Tsp45I GTSAC 2 cut(s) 1066, 1124
TspDTI ATGAA 5 cut(s) 271, 540, 810, 1065, 1095
TspGWI ACGGA 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 1177
VpaK11BI GGWCC 2 cut(s) 167, 558
XapI RAATTY 4 cut(s) 563, 636, 978, 1041
XceI RCATGY 3 cut(s) 95, 752, 1135
XmaJI CCTAGG 1 cut(s) 110
XspI CTAG 4 cut(s) 111, 372, 617, 702
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.