Rh7DG387900

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000734
Physical Location & Seq
Forward (+)
53068760 .. 53091948
23189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG387900.1

Sequence Viewer

Length: 1407 bp
ATGACCAAACCCTGCATTGCCAGCATTGCCATGCCCGAAATACTGTATGAGGATAATGTCATTGATGTGTCCACATTTAATCTAGATCTCTGTAAACACTCTCCAAACCTTTCATATTCATTCAAGGTTTCAAATTTGAGCAGCATGGAGTCCTTGCCTGAAGCTCTACCAAGTGCATCAGATCAGTTTGTGAGCAACAACGGGCTGAGTACTGATGAATATTTCCTTGAGAAAATTATTTCGACGATCAAGAAGCAGCAAAATGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTTTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCTGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCGCATAATCTATGCAAATCCCTGTAAAGCTAGCTCTCACATCAAGTACGCTGCCAAAGTTGGTGTTAACCTAATGACTTTCGACTCGGTATATGAAGTTGAAAAGATACAAAAATGCCACCCCAAATGTTCTTTACTTATCCGCATTAAAGCTCCGGACGAAAGTGGGTGCATGTGGACTACGAGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCCTCGCTTCTTCAAGCCGCTCAAACTGTAGGACTCGAAGTTACTGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCGTACAAAACAGCTATAGAGGCGGCTAAGGCGGTTTTTCAGGAGGCAGCCAGGCTCTGCATGGCTCCCATGTATGTGTTGAACATTGGCGGCGGCTTTGTGTCTGAGCCATCATTCTTTGAAGCTGCAGCATCAGCCGTGAAAACCGCTGTGGAGACATATTTTTCAGAGGAAGAGCGACGCAGCTTAACAGTGATAGCCGAGCCAGGTCGGTTTTTTGTAGAGACAGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACACTACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCGTGCGGACCCTAGAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAACAGTGATGGCAACGAGAAGAATCCAGTCATAATGGTACCTGGCAAAAGAACTGGTAGTGCTCGCACTTATATTTCAACTGTGTTTGGTCCAACGTGTGATCCGGTTGACAAGGTGTTGGGGGGTGAGCAGCTACCAGAACTTGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCGGCATGTAGCAACAACTTTAATGGTTTTGGCTCAAGCAAGATCACCTACCTTACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

468

Amino Acids

51.43

Weight (kDa)

5.36

Isoelectric Point (pI)

48.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 93 - 445 2.9e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 100 - 333 3.2e-71 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1192
AccB1I GGYRCC 1 cut(s) 1192
AccBSI CCGCTC 1 cut(s) 710
AccIII TCCGGA 2 cut(s) 469, 628
AciI CCGC 8 cut(s) 616, 708, 800, 809, 867, 870, 924, 1103
AclWI GGATC 4 cut(s) 387, 480, 1076, 1250
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 180, 702
AfaI GTAC 4 cut(s) 211, 521, 782, 1194
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 1250
AgsI TTSAA 8 cut(s) 124, 132, 575, 704, 859, 899, 1124, 1233
AjnI CCWGG 4 cut(s) 317, 827, 982, 1195
AloI GAACNNNNNNTCC 2 cut(s) 643, 675
Alw21I GWGCWC 2 cut(s) 676, 1219
Alw26I GTCTC 2 cut(s) 926, 995
AlwI GGATC 4 cut(s) 387, 480, 1076, 1250
AlwNI CAGNNNCTG 1 cut(s) 834
Aor13HI TCCGGA 2 cut(s) 469, 628
ApeKI GCWGC 8 cut(s) 141, 256, 524, 824, 902, 905, 960, 1285
ApoI RAATTY 1 cut(s) 133
Asp718I GGTACC 1 cut(s) 1192
AspS9I GGNCC 4 cut(s) 340, 1089, 1105, 1244
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 4 cut(s) 1012, 1292, 1315, 1381
AsuNHI GCTAGC 1 cut(s) 503
AvaII GGWCC 4 cut(s) 340, 1089, 1105, 1244
BanI GGYRCC 1 cut(s) 1192
Bbv12I GWGCWC 2 cut(s) 676, 1219
BbvI GCAGC 8 cut(s) 153, 268, 511, 836, 889, 917, 972, 1297
BccI CCATC 3 cut(s) 331, 895, 1157
BceAI ACGGC 1 cut(s) 899
BciT130I CCWGG 4 cut(s) 319, 829, 984, 1197
BcnI CCSGG 1 cut(s) 377
BcoDI GTCTC 2 cut(s) 926, 995
BfaI CTAG 3 cut(s) 83, 504, 1110
BfmI CTRYAG 3 cut(s) 717, 792, 903
BglII AGATCT 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 5 cut(s) 319, 377, 829, 984, 1197
Bme18I GGWCC 4 cut(s) 340, 1089, 1105, 1244
BmgT120I GGNCC 4 cut(s) 340, 1089, 1105, 1244
BmiI GGNNCC 4 cut(s) 843, 1090, 1107, 1194
BmrFI CCNGG 5 cut(s) 319, 377, 829, 984, 1197
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 3 cut(s) 185, 917, 1086
BmtI GCTAGC 1 cut(s) 507
BmuI ACTGGG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 5 cut(s) 248, 394, 759, 1319, 1363
BpuMI CCSGG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 280
BsaWI WCCGGW 3 cut(s) 469, 628, 1258
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse1I ACTGG 4 cut(s) 739, 1070, 1181, 1213
Bse3DI GCAATG 3 cut(s) 15, 24, 1131
BseAI TCCGGA 2 cut(s) 469, 628
BseBI CCWGG 4 cut(s) 319, 829, 984, 1197
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 3 cut(s) 15, 24, 1131
BseMII CTCAG 3 cut(s) 197, 426, 873
BseNI ACTGG 4 cut(s) 739, 1070, 1181, 1213
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 8 cut(s) 153, 268, 511, 836, 889, 917, 972, 1297
BshNI GGYRCC 1 cut(s) 1192
BsiHKAI GWGCWC 2 cut(s) 676, 1219
BsiSI CCGG 4 cut(s) 377, 470, 629, 1259
BslFI GGGAC 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 926, 995
BsmFI GGGAC 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 676, 1219
Bsp13I TCCGGA 2 cut(s) 469, 628
Bsp143I GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
BspACI CCGC 8 cut(s) 616, 708, 800, 809, 867, 870, 924, 1103
BspCNI CTCAG 3 cut(s) 198, 427, 874
BspEI TCCGGA 2 cut(s) 469, 628
BspLI GGNNCC 4 cut(s) 843, 1090, 1107, 1194
BspMAI CTGCAG 1 cut(s) 907
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 4 cut(s) 387, 480, 1076, 1250
BspQI GCTCTTC 1 cut(s) 945
BspT107I GGYRCC 1 cut(s) 1192
BsrBI CCGCTC 1 cut(s) 710
BsrDI GCAATG 3 cut(s) 15, 24, 1131
BsrI ACTGG 4 cut(s) 739, 1070, 1181, 1213
BssMI GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
Bst2UI CCWGG 4 cut(s) 319, 829, 984, 1197
Bst4CI ACNGT 5 cut(s) 45, 718, 970, 1160, 1237
Bst6I CTCTTC 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 5 cut(s) 22, 391, 505, 1101, 1219
BstDEI CTNAG 4 cut(s) 206, 435, 804, 882
BstKTI GATC 8 cut(s) 88, 184, 249, 382, 475, 1071, 1258, 1389
BstMAI GTCTC 2 cut(s) 926, 995
BstMBI GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
BstMWI GCNNNNNNNGC 5 cut(s) 21, 26, 797, 806, 911
BstNI CCWGG 4 cut(s) 319, 829, 984, 1197
BstNSI RCATGY 3 cut(s) 649, 1150, 1353
BstSCI CCNGG 5 cut(s) 317, 375, 827, 982, 1195
BstSFI CTRYAG 3 cut(s) 717, 792, 903
BstV1I GCAGC 8 cut(s) 153, 268, 511, 836, 889, 917, 972, 1297
BstX2I RGATCY 2 cut(s) 85, 379
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 2 cut(s) 85, 379
BtsIMutI CAGTG 2 cut(s) 975, 1165
Cac8I GCNNGC 5 cut(s) 22, 391, 505, 1101, 1219
CaiI CAGNNNCTG 1 cut(s) 834
Cfr13I GGNCC 4 cut(s) 340, 1089, 1105, 1244
CseI GACGC 1 cut(s) 966
Csp6I GTAC 4 cut(s) 210, 520, 781, 1193
CviQI GTAC 4 cut(s) 210, 520, 781, 1193
DdeI CTNAG 4 cut(s) 206, 435, 804, 882
DpnI GATC 8 cut(s) 87, 183, 248, 381, 474, 1070, 1257, 1388
DpnII GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
Eco47I GGWCC 4 cut(s) 340, 1089, 1105, 1244
Eco57I CTGAAG 2 cut(s) 180, 702
EcoRII CCWGG 4 cut(s) 317, 827, 982, 1195
EcoT22I ATGCAT 1 cut(s) 1148
FaqI GGGAC 1 cut(s) 748
FspBI CTAG 3 cut(s) 83, 504, 1110
HapII CCGG 4 cut(s) 377, 470, 629, 1259
HgaI GACGC 1 cut(s) 966
HincII GTYRAC 2 cut(s) 541, 1264
HindII GTYRAC 2 cut(s) 541, 1264
HinfI GANTC 6 cut(s) 149, 443, 557, 723, 1124, 1177
HpaI GTTAAC 1 cut(s) 541
HpaII CCGG 4 cut(s) 377, 470, 629, 1259
HphI GGTGA 4 cut(s) 1012, 1292, 1315, 1381
Hpy166II GTNNAC 5 cut(s) 72, 95, 541, 651, 1264
Hpy188I TCNGA 8 cut(s) 181, 336, 436, 883, 946, 1058, 1140, 1326
Hpy188III TCNNGA 6 cut(s) 83, 250, 470, 629, 818, 1033
Hpy8I GTNNAC 5 cut(s) 72, 95, 541, 651, 1264
Hpy99I CGWCG 3 cut(s) 247, 960, 1348
HpyAV CCTTC 2 cut(s) 341, 1070
HpyCH4III ACNGT 5 cut(s) 45, 718, 970, 1160, 1237
HpyCH4IV ACGT 4 cut(s) 279, 325, 1250, 1343
HpyF10VI GCNNNNNNNGC 5 cut(s) 21, 26, 797, 806, 911
HpyF3I CTNAG 4 cut(s) 206, 435, 804, 882
HpySE526I ACGT 4 cut(s) 279, 325, 1250, 1343
Kpn2I TCCGGA 2 cut(s) 469, 628
KpnI GGTACC 1 cut(s) 1196
KspAI GTTAAC 1 cut(s) 541
Kzo9I GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
LguI GCTCTTC 1 cut(s) 945
LmnI GCTCC 2 cut(s) 631, 847
Lsp1109I GCAGC 8 cut(s) 153, 268, 511, 836, 889, 917, 972, 1297
LweI GCATC 3 cut(s) 185, 917, 1086
MaeI CTAG 3 cut(s) 83, 504, 1110
MaeII ACGT 4 cut(s) 279, 325, 1250, 1343
MaeIII GTNAC 3 cut(s) 326, 730, 1018
MalI GATC 8 cut(s) 87, 183, 248, 381, 474, 1070, 1257, 1388
MbiI CCGCTC 1 cut(s) 710
MboI GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
MboII GAAGA 4 cut(s) 692, 695, 962, 1186
MflI RGATCY 2 cut(s) 85, 379
MhlI GDGCHC 2 cut(s) 676, 1219
MluCI AATT 3 cut(s) 133, 234, 769
MlyI GAGTC 4 cut(s) 158, 452, 551, 717
MmeI TCCRAC 2 cut(s) 367, 1271
Mph1103I ATGCAT 1 cut(s) 1148
MroI TCCGGA 2 cut(s) 469, 628
MseI TTAA 6 cut(s) 78, 360, 540, 621, 965, 1365
MslI CAYNNNNRTG 3 cut(s) 29, 65, 851
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 4 cut(s) 377, 470, 629, 1259
MspR9I CCNGG 5 cut(s) 319, 377, 829, 984, 1197
MvaI CCWGG 4 cut(s) 319, 829, 984, 1197
MwoI GCNNNNNNNGC 5 cut(s) 21, 26, 797, 806, 911
NciI CCSGG 1 cut(s) 377
NdeII GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
NheI GCTAGC 1 cut(s) 503
NlaIV GGNNCC 4 cut(s) 843, 1090, 1107, 1194
NmeAIII GCCGAG 1 cut(s) 1003
NmuCI GTSAC 1 cut(s) 1018
NsiI ATGCAT 1 cut(s) 1148
NspI RCATGY 3 cut(s) 649, 1150, 1353
PciSI GCTCTTC 1 cut(s) 945
PfeI GAWTC 2 cut(s) 1124, 1177
PleI GAGTC 4 cut(s) 157, 451, 551, 717
PpsI GAGTC 4 cut(s) 157, 451, 551, 717
Ppu21I YACGTR 1 cut(s) 280
Psp6I CCWGG 4 cut(s) 317, 827, 982, 1195
PspGI CCWGG 4 cut(s) 317, 827, 982, 1195
PspN4I GGNNCC 4 cut(s) 843, 1090, 1107, 1194
PspPI GGNCC 4 cut(s) 340, 1089, 1105, 1244
PstI CTGCAG 1 cut(s) 907
PstNI CAGNNNCTG 1 cut(s) 834
PsuI RGATCY 2 cut(s) 85, 379
RsaI GTAC 4 cut(s) 211, 521, 782, 1194
RsaNI GTAC 4 cut(s) 210, 520, 781, 1193
RseI CAYNNNNRTG 3 cut(s) 29, 65, 851
SapI GCTCTTC 1 cut(s) 945
SaqAI TTAA 6 cut(s) 78, 360, 540, 621, 965, 1365
Sau3AI GATC 8 cut(s) 85, 181, 246, 379, 472, 1068, 1255, 1386
Sau96I GGNCC 4 cut(s) 340, 1089, 1105, 1244
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 4 cut(s) 158, 452, 551, 717
ScrFI CCNGG 5 cut(s) 319, 377, 829, 984, 1197
SduI GDGCHC 2 cut(s) 676, 1219
SfaNI GCATC 3 cut(s) 185, 917, 1086
SfcI CTRYAG 3 cut(s) 717, 792, 903
SinI GGWCC 4 cut(s) 340, 1089, 1105, 1244
SmiMI CAYNNNNRTG 3 cut(s) 29, 65, 851
SmlI CTYRAG 5 cut(s) 227, 409, 774, 1298, 1378
SmoI CTYRAG 5 cut(s) 227, 409, 774, 1298, 1378
Sse9I AATT 3 cut(s) 133, 234, 769
SsiI CCGC 8 cut(s) 616, 708, 800, 809, 867, 870, 924, 1103
SspI AATATT 1 cut(s) 221
SspMI CTAG 3 cut(s) 83, 504, 1110
StyD4I CCNGG 5 cut(s) 317, 375, 827, 982, 1195
TaaI ACNGT 5 cut(s) 45, 718, 970, 1160, 1237
TaiI ACGT 4 cut(s) 282, 328, 1253, 1346
TaqI TCGA 4 cut(s) 242, 417, 555, 726
TasI AATT 3 cut(s) 133, 234, 769
TatI WGTACW 1 cut(s) 209
TauI GCSGC 4 cut(s) 710, 803, 870, 873
TfiI GAWTC 2 cut(s) 1124, 1177
Tru1I TTAA 6 cut(s) 78, 360, 540, 621, 965, 1365
Tru9I TTAA 6 cut(s) 78, 360, 540, 621, 965, 1365
TscAI CASTG 2 cut(s) 975, 1165
TseFI GTSAC 1 cut(s) 1018
TseI GCWGC 8 cut(s) 141, 256, 524, 824, 902, 905, 960, 1285
Tsp45I GTSAC 1 cut(s) 1018
TspDTI ATGAA 4 cut(s) 102, 108, 231, 582
TspRI CASTG 2 cut(s) 975, 1165
VpaK11BI GGWCC 4 cut(s) 340, 1089, 1105, 1244
XapI RAATTY 1 cut(s) 133
XbaI TCTAGA 1 cut(s) 82
XceI RCATGY 3 cut(s) 649, 1150, 1353
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XspI CTAG 3 cut(s) 83, 504, 1110
ZrmI AGTACT 1 cut(s) 211
Zsp2I ATGCAT 1 cut(s) 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.