Rw7G032670

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000734
Physical Location & Seq
Forward (+)
47727437 .. 47729148
1712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G032670.1

Sequence Viewer

Length: 1263 bp
ATGGAGTCCTTGCCTGAAGCTCTACCAAGTGCATCAGATCAGTTTGTGAGCAACAACGGGCTGAGTACTGATGAATATTTCCTTGAGAAAATTATTTCGACGATCAAGAAGCAGCAAAATGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTTTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCTGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCGCATAATCTATGCAAATCCCTGTAAAGCTAGCTCTCACATCAAGTACGCTGCCAAAGTTGGTGTTAACCTAATGACTTTCGACTCGGTATATGAAGTTGAAAAGATACAAAAATGCCACCCCAAATGTTCTTTACTTATCCGCATTAAAGCTCCGGACGAAAGTGGGTGCATGTGGACTACGAGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCCTCGCTTCTTCAAGCCGCTCAAACTGTAGGACTCGAAGTTACTGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCGTACAAAACAGCTATAGAGGCGGCTAAGGCGGTTTTTCAGGAGGCAGCCAGGCTCTGCATGGCTCCCATGTATGTGTTGAACATTGGCGGCGGCTTTGTGTCTGAGCCATCATTCTTTGAAGCTGCAGCATCAGCCGTGAAAACCGCTGTGGAGACATATTTTTCAGAGGAAGAGCGACGCAGCTTAACAGTGATAGCCGAGCCAGGTCGGTTTTTTGTAGAGACAGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACACTACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCGTGCGGACCCTAGAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAACAGTGATGGCAACGAGAAGAATCCAGTCATAATGGTACCTGGCAAAAGAACTGCTAGTGCTCGCACTTATATTTCAACTGTGTTTGGTCCAACGTGTGATCCGGTTGACAAGGTGTTGGGGGGTGAGCAGCTACCAGAACTTGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCGGCATGTAGCAACAACTTTAATGGTTTTGGCTCAAGCAAGATCACCTACCTTACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

420

Amino Acids

46.12

Weight (kDa)

5.43

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 397 2e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 52 - 285 2.4e-71 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 1048
AccBSI CCGCTC 1 cut(s) 566
AccIII TCCGGA 2 cut(s) 325, 484
AciI CCGC 8 cut(s) 472, 564, 656, 665, 723, 726, 780, 959
AclWI GGATC 4 cut(s) 243, 336, 932, 1106
AcuI CTGAAG 2 cut(s) 36, 558
AfaI GTAC 4 cut(s) 67, 377, 638, 1050
AfiI CCNNNNNNNGG 1 cut(s) 193
AflIII ACRYGT 1 cut(s) 1106
AgsI TTSAA 6 cut(s) 431, 560, 715, 755, 980, 1089
AjnI CCWGG 4 cut(s) 173, 683, 838, 1051
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
Alw21I GWGCWC 2 cut(s) 532, 1075
Alw26I GTCTC 2 cut(s) 782, 851
AlwI GGATC 4 cut(s) 243, 336, 932, 1106
AlwNI CAGNNNCTG 1 cut(s) 690
Aor13HI TCCGGA 2 cut(s) 325, 484
ApeKI GCWGC 7 cut(s) 112, 380, 680, 758, 761, 816, 1141
Asp718I GGTACC 1 cut(s) 1048
AspS9I GGNCC 4 cut(s) 196, 945, 961, 1100
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 4 cut(s) 868, 1148, 1171, 1237
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 4 cut(s) 196, 945, 961, 1100
BanI GGYRCC 1 cut(s) 1048
Bbv12I GWGCWC 2 cut(s) 532, 1075
BbvI GCAGC 7 cut(s) 124, 367, 692, 745, 773, 828, 1153
BccI CCATC 3 cut(s) 187, 751, 1013
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 4 cut(s) 175, 685, 840, 1053
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 782, 851
BfaI CTAG 3 cut(s) 360, 966, 1068
BfmI CTRYAG 3 cut(s) 573, 648, 759
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 5 cut(s) 175, 233, 685, 840, 1053
Bme18I GGWCC 4 cut(s) 196, 945, 961, 1100
BmgT120I GGNCC 4 cut(s) 196, 945, 961, 1100
BmiI GGNNCC 4 cut(s) 699, 946, 963, 1050
BmrFI CCNGG 5 cut(s) 175, 233, 685, 840, 1053
BmrI ACTGGG 1 cut(s) 600
BmsI GCATC 3 cut(s) 41, 773, 942
BmtI GCTAGC 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 600
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 5 cut(s) 104, 250, 615, 1175, 1219
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 136
BsaWI WCCGGW 3 cut(s) 325, 484, 1114
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 3 cut(s) 595, 926, 1037
Bse3DI GCAATG 1 cut(s) 987
BseAI TCCGGA 2 cut(s) 325, 484
BseBI CCWGG 4 cut(s) 175, 685, 840, 1053
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 53, 282, 729
BseNI ACTGG 3 cut(s) 595, 926, 1037
BseRI GAGGAG 1 cut(s) 230
BseXI GCAGC 7 cut(s) 124, 367, 692, 745, 773, 828, 1153
BshNI GGYRCC 1 cut(s) 1048
BsiHKAI GWGCWC 2 cut(s) 532, 1075
BsiSI CCGG 4 cut(s) 233, 326, 485, 1115
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 2 cut(s) 782, 851
BsmFI GGGAC 1 cut(s) 604
Bsp1286I GDGCHC 2 cut(s) 532, 1075
Bsp13I TCCGGA 2 cut(s) 325, 484
Bsp143I GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
BspACI CCGC 8 cut(s) 472, 564, 656, 665, 723, 726, 780, 959
BspCNI CTCAG 3 cut(s) 54, 283, 730
BspEI TCCGGA 2 cut(s) 325, 484
BspLI GGNNCC 4 cut(s) 699, 946, 963, 1050
BspMAI CTGCAG 1 cut(s) 763
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 4 cut(s) 243, 336, 932, 1106
BspQI GCTCTTC 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 1048
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 3 cut(s) 595, 926, 1037
BssMI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
Bst2UI CCWGG 4 cut(s) 175, 685, 840, 1053
Bst4CI ACNGT 4 cut(s) 574, 826, 1016, 1093
Bst6I CTCTTC 1 cut(s) 801
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 247, 361, 957, 1075
BstDEI CTNAG 4 cut(s) 62, 291, 660, 738
BstKTI GATC 7 cut(s) 40, 105, 238, 331, 927, 1114, 1245
BstMAI GTCTC 2 cut(s) 782, 851
BstMBI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
BstMWI GCNNNNNNNGC 3 cut(s) 653, 662, 767
BstNI CCWGG 4 cut(s) 175, 685, 840, 1053
BstNSI RCATGY 3 cut(s) 505, 1006, 1209
BstSCI CCNGG 5 cut(s) 173, 231, 683, 838, 1051
BstSFI CTRYAG 3 cut(s) 573, 648, 759
BstV1I GCAGC 7 cut(s) 124, 367, 692, 745, 773, 828, 1153
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 831, 1021
Cac8I GCNNGC 4 cut(s) 247, 361, 957, 1075
CaiI CAGNNNCTG 1 cut(s) 690
Cfr13I GGNCC 4 cut(s) 196, 945, 961, 1100
CseI GACGC 1 cut(s) 822
Csp6I GTAC 4 cut(s) 66, 376, 637, 1049
CviAII CATG 8 cut(s) 166, 260, 502, 694, 703, 949, 1003, 1206
CviQI GTAC 4 cut(s) 66, 376, 637, 1049
DdeI CTNAG 4 cut(s) 62, 291, 660, 738
DpnI GATC 7 cut(s) 39, 104, 237, 330, 926, 1113, 1244
DpnII GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco47I GGWCC 4 cut(s) 196, 945, 961, 1100
Eco57I CTGAAG 2 cut(s) 36, 558
EcoRII CCWGG 4 cut(s) 173, 683, 838, 1051
EcoT22I ATGCAT 1 cut(s) 1004
FaeI CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
FaqI GGGAC 1 cut(s) 604
FatI CATG 8 cut(s) 165, 259, 501, 693, 702, 948, 1002, 1205
FspBI CTAG 3 cut(s) 360, 966, 1068
HapII CCGG 4 cut(s) 233, 326, 485, 1115
HgaI GACGC 1 cut(s) 822
Hin1II CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
HincII GTYRAC 2 cut(s) 397, 1120
HindII GTYRAC 2 cut(s) 397, 1120
HinfI GANTC 6 cut(s) 5, 299, 413, 579, 980, 1033
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 4 cut(s) 233, 326, 485, 1115
HphI GGTGA 4 cut(s) 868, 1148, 1171, 1237
Hpy166II GTNNAC 3 cut(s) 397, 507, 1120
Hpy188I TCNGA 8 cut(s) 37, 192, 292, 739, 802, 914, 996, 1182
Hpy188III TCNNGA 5 cut(s) 106, 326, 485, 674, 889
Hpy8I GTNNAC 3 cut(s) 397, 507, 1120
Hpy99I CGWCG 3 cut(s) 103, 816, 1204
HpyAV CCTTC 2 cut(s) 197, 926
HpyCH4III ACNGT 4 cut(s) 574, 826, 1016, 1093
HpyCH4IV ACGT 4 cut(s) 135, 181, 1106, 1199
HpyCH4V TGCA 9 cut(s) 32, 222, 281, 344, 501, 693, 761, 987, 1002
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 662, 767
HpyF3I CTNAG 4 cut(s) 62, 291, 660, 738
HpySE526I ACGT 4 cut(s) 135, 181, 1106, 1199
Hsp92II CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
Kpn2I TCCGGA 2 cut(s) 325, 484
KpnI GGTACC 1 cut(s) 1052
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 487, 703
Lsp1109I GCAGC 7 cut(s) 124, 367, 692, 745, 773, 828, 1153
LweI GCATC 3 cut(s) 41, 773, 942
MaeI CTAG 3 cut(s) 360, 966, 1068
MaeII ACGT 4 cut(s) 135, 181, 1106, 1199
MaeIII GTNAC 3 cut(s) 182, 586, 874
MalI GATC 7 cut(s) 39, 104, 237, 330, 926, 1113, 1244
MbiI CCGCTC 1 cut(s) 566
MboI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
MboII GAAGA 4 cut(s) 548, 551, 818, 1042
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 532, 1075
MluCI AATT 2 cut(s) 90, 625
MlyI GAGTC 4 cut(s) 14, 308, 407, 573
MmeI TCCRAC 2 cut(s) 223, 1127
Mph1103I ATGCAT 1 cut(s) 1004
MroI TCCGGA 2 cut(s) 325, 484
MseI TTAA 5 cut(s) 216, 396, 477, 821, 1221
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 233, 326, 485, 1115
MspR9I CCNGG 5 cut(s) 175, 233, 685, 840, 1053
MvaI CCWGG 4 cut(s) 175, 685, 840, 1053
MwoI GCNNNNNNNGC 3 cut(s) 653, 662, 767
NciI CCSGG 1 cut(s) 233
NdeII GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 8 cut(s) 169, 263, 505, 697, 706, 952, 1006, 1209
NlaIV GGNNCC 4 cut(s) 699, 946, 963, 1050
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 874
NsiI ATGCAT 1 cut(s) 1004
NspI RCATGY 3 cut(s) 505, 1006, 1209
PciSI GCTCTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 980, 1033
PleI GAGTC 4 cut(s) 13, 307, 407, 573
PpsI GAGTC 4 cut(s) 13, 307, 407, 573
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 4 cut(s) 173, 683, 838, 1051
PspGI CCWGG 4 cut(s) 173, 683, 838, 1051
PspN4I GGNNCC 4 cut(s) 699, 946, 963, 1050
PspPI GGNCC 4 cut(s) 196, 945, 961, 1100
PstI CTGCAG 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 4 cut(s) 67, 377, 638, 1050
RsaNI GTAC 4 cut(s) 66, 376, 637, 1049
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 5 cut(s) 216, 396, 477, 821, 1221
Sau3AI GATC 7 cut(s) 37, 102, 235, 328, 924, 1111, 1242
Sau96I GGNCC 4 cut(s) 196, 945, 961, 1100
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 4 cut(s) 14, 308, 407, 573
ScrFI CCNGG 5 cut(s) 175, 233, 685, 840, 1053
SduI GDGCHC 2 cut(s) 532, 1075
SfaNI GCATC 3 cut(s) 41, 773, 942
SfcI CTRYAG 3 cut(s) 573, 648, 759
SinI GGWCC 4 cut(s) 196, 945, 961, 1100
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 5 cut(s) 83, 265, 630, 1154, 1234
SmoI CTYRAG 5 cut(s) 83, 265, 630, 1154, 1234
Sse9I AATT 2 cut(s) 90, 625
SsiI CCGC 8 cut(s) 472, 564, 656, 665, 723, 726, 780, 959
SspI AATATT 1 cut(s) 77
SspMI CTAG 3 cut(s) 360, 966, 1068
StyD4I CCNGG 5 cut(s) 173, 231, 683, 838, 1051
TaaI ACNGT 4 cut(s) 574, 826, 1016, 1093
TaiI ACGT 4 cut(s) 138, 184, 1109, 1202
TaqI TCGA 4 cut(s) 98, 273, 411, 582
TasI AATT 2 cut(s) 90, 625
TatI WGTACW 1 cut(s) 65
TauI GCSGC 4 cut(s) 566, 659, 726, 729
TfiI GAWTC 2 cut(s) 980, 1033
Tru1I TTAA 5 cut(s) 216, 396, 477, 821, 1221
Tru9I TTAA 5 cut(s) 216, 396, 477, 821, 1221
TscAI CASTG 2 cut(s) 831, 1021
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 7 cut(s) 112, 380, 680, 758, 761, 816, 1141
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 2 cut(s) 87, 438
TspRI CASTG 2 cut(s) 831, 1021
VpaK11BI GGWCC 4 cut(s) 196, 945, 961, 1100
XceI RCATGY 3 cut(s) 505, 1006, 1209
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XspI CTAG 3 cut(s) 360, 966, 1068
ZrmI AGTACT 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.