Rw3G024130

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000734
Physical Location & Seq
Forward (+)
30777527 .. 30793181
15655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024130.1

Sequence Viewer

Length: 1287 bp
ATGTTCACCAGCATGGAGTCGTGGAATGTAAAGAGCCTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGACCAATAACAGGCTGGGTGATGATGAATATTTCATTCAGAAAATCATTTCGATGATCAAGAAACTGCAGCCAAGTGAGGAAGCATTTTACGTGCTGGATTTGGGTCTTGTAAGCAACCTCATGGACACATGGAAACGTAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCACCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTTGGAGTTTCTCCGGATCACATCATCTATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAACCACTTATGACTCAGTGGGTGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCGGACGAGAGTGGGTGCAATTGGCCACTGGGTTCCAAGTTCGGTGCACTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCGCTCAAACTGCAGGACTCAGAGTAGCTGGGGTTTCATTTCACGTAGGAGGTGAGTCCTACAATTTTCAAGCATACAAAACAGCCTTAGAGGCAGCTAAGGCGGTTTTCCAGGAGGCTGCTAAGCTCTCTATGCCTCCCTTGCATGTGTTGGACATTGGCGGTGGCTTCTTGTCCAAGCCATCGTCCTTTGAAGCTGCGGCAGCAGCCGTGAAAACCTCTGTGGAGACTTATTTTTCAGAGGAGGAGCGACGCAGCCTGACGGTGATAGCCGAGCCAGGCCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACAATACTGGATCAACGAAGGGTCTTATGGGTCCATGATGCTTGCCCCTAAAACCCTACTTGAATCGTGCATTGCTCTGAGATGCATGTCCAATAACAGTGAGGGCATCGAGAAGAATCCAGTCTTGATGGTCTGTGGCAAAGCTACTGGCTGTGCTCGCACTTATAGTTCGACTGTGTTTGGTCCGACGTGTGATTCGGCTGACAAGGTGTTGGATGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTTGGCGCGTAGCAGCCACTTCCATGGTTTTGGCTCCGCCAAGATCACCTATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

428

Amino Acids

46.7

Weight (kDa)

5.97

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 54 - 405 6.1e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 61 - 294 6e-66 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 474
AccBSI CCGCTC 2 cut(s) 580, 593
AccII CGCG 1 cut(s) 1231
AccIII TCCGGA 2 cut(s) 352, 511
AciI CCGC 8 cut(s) 499, 578, 591, 692, 750, 788, 888, 1260
AclWI GGATC 4 cut(s) 363, 457, 490, 959
AcoI YGGCCR 1 cut(s) 533
AcuI CTGAAG 2 cut(s) 432, 585
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 81, 220
AflIII ACRYGT 1 cut(s) 1130
AgsI TTSAA 6 cut(s) 41, 294, 458, 659, 782, 1004
AjiI CACGTC 1 cut(s) 1131
AjnI CCWGG 2 cut(s) 699, 865
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 9 cut(s) 338, 386, 390, 509, 617, 686, 715, 785, 1085
AluI AGCT 9 cut(s) 338, 386, 390, 509, 617, 686, 715, 785, 1085
Alw21I GWGCWC 3 cut(s) 58, 559, 1099
Alw26I GTCTC 3 cut(s) 579, 809, 878
Alw44I GTGCAC 2 cut(s) 54, 555
AlwI GGATC 4 cut(s) 363, 457, 490, 959
Aor13HI TCCGGA 2 cut(s) 352, 511
AoxI GGCC 2 cut(s) 533, 868
ApaLI GTGCAC 2 cut(s) 54, 555
ApeKI GCWGC 9 cut(s) 139, 407, 683, 707, 785, 791, 794, 843, 1236
ArsI GACNNNNNNTTYG 2 cut(s) 1120, 1152
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 3 cut(s) 223, 972, 1124
AsuHPI GGTGA 8 cut(s) 101, 461, 653, 865, 895, 1172, 1195, 1261
AsuNHI GCTAGC 1 cut(s) 386
AvaII GGWCC 3 cut(s) 223, 972, 1124
BaeGI GKGCMC 2 cut(s) 58, 559
BalI TGGCCA 1 cut(s) 535
BanI GGYRCC 1 cut(s) 474
Bbv12I GWGCWC 3 cut(s) 58, 559, 1099
BbvI GCAGC 9 cut(s) 151, 394, 694, 695, 772, 803, 806, 855, 1248
BccI CCATC 3 cut(s) 778, 1063, 1151
BceAI ACGGC 2 cut(s) 224, 782
BciT130I CCWGG 2 cut(s) 701, 867
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 3 cut(s) 579, 809, 878
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 2 cut(s) 137, 600
BglI GCCNNNNNGGC 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 711
Bme1390I CCNGG 2 cut(s) 701, 867
Bme18I GGWCC 3 cut(s) 223, 972, 1124
BmgBI CACGTC 1 cut(s) 1131
BmgT120I GGNCC 3 cut(s) 223, 972, 1124
BmiI GGNNCC 4 cut(s) 476, 544, 973, 1258
BmrFI CCNGG 2 cut(s) 701, 867
BmrI ACTGGG 1 cut(s) 548
BmsI GCATC 4 cut(s) 510, 969, 1013, 1056
BmtI GCTAGC 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 1199
Bpu10I CCTNAGC 1 cut(s) 687
Bpu1102I GCTNAGC 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 270
BsaAI YACGTR 2 cut(s) 163, 634
BsaBI GATNNNNATC 1 cut(s) 500
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 2 cut(s) 276, 1246
BsaWI WCCGGW 2 cut(s) 352, 511
Bsc4I CCNNNNNNNGG 2 cut(s) 81, 220
Bse118I RCCGGY 1 cut(s) 870
Bse1I ACTGG 6 cut(s) 543, 953, 1061, 1093, 1165, 1182
Bse3DI GCAATG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 500
BseAI TCCGGA 2 cut(s) 352, 511
BseBI CCWGG 2 cut(s) 701, 867
BseDI CCNNGG 2 cut(s) 276, 1246
BseGI GGATG 1 cut(s) 1162
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 2 cut(s) 81, 220
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 4 cut(s) 309, 456, 622, 1010
BseNI ACTGG 6 cut(s) 543, 953, 1061, 1093, 1165, 1182
BseRI GAGGAG 4 cut(s) 257, 572, 845, 848
BseSI GKGCMC 2 cut(s) 58, 559
BseXI GCAGC 9 cut(s) 151, 394, 694, 695, 772, 803, 806, 855, 1248
BseYI CCCAGC 2 cut(s) 85, 617
Bsh1236I CGCG 1 cut(s) 1231
BshFI GGCC 2 cut(s) 535, 870
BshNI GGYRCC 1 cut(s) 474
BsiHKAI GWGCWC 3 cut(s) 58, 559, 1099
BsiSI CCGG 3 cut(s) 353, 512, 871
BslFI GGGAC 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 81, 220
BsmAI GTCTC 3 cut(s) 579, 809, 878
BsmFI GGGAC 1 cut(s) 297
BsnI GGCC 2 cut(s) 535, 870
Bso31I GGTCTC 1 cut(s) 878
Bsp1286I GDGCHC 3 cut(s) 58, 559, 1099
Bsp13I TCCGGA 2 cut(s) 352, 511
Bsp143I GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
Bsp1720I GCTNAGC 1 cut(s) 711
Bsp19I CCATGG 1 cut(s) 1246
BspACI CCGC 8 cut(s) 499, 578, 591, 692, 750, 788, 888, 1260
BspANI GGCC 2 cut(s) 535, 870
BspCNI CTCAG 4 cut(s) 310, 455, 621, 1011
BspEI TCCGGA 2 cut(s) 352, 511
BspFNI CGCG 1 cut(s) 1231
BspLI GGNNCC 4 cut(s) 476, 544, 973, 1258
BspMAI CTGCAG 2 cut(s) 141, 604
BspOI GCTAGC 1 cut(s) 390
BspPI GGATC 4 cut(s) 363, 457, 490, 959
BspT107I GGYRCC 1 cut(s) 474
BspTNI GGTCTC 1 cut(s) 878
BsrBI CCGCTC 2 cut(s) 580, 593
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 870
BsrI ACTGG 6 cut(s) 543, 953, 1061, 1093, 1165, 1182
BssAI RCCGGY 1 cut(s) 870
BssECI CCNNGG 2 cut(s) 276, 1246
BssMI GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
BssT1I CCWWGG 2 cut(s) 276, 1246
Bst2UI CCWGG 2 cut(s) 701, 867
Bst4CI ACNGT 4 cut(s) 305, 853, 1040, 1117
BstBAI YACGTR 2 cut(s) 163, 634
BstC8I GCNNGC 3 cut(s) 388, 984, 1099
BstDEI CTNAG 7 cut(s) 318, 442, 608, 676, 687, 711, 1019
BstDSI CCRYGG 1 cut(s) 1246
BstEII GGTNACC 1 cut(s) 1160
BstF5I GGATG 1 cut(s) 1162
BstFNI CGCG 1 cut(s) 1231
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 7 cut(s) 64, 129, 358, 465, 498, 954, 1269
BstMAI GTCTC 3 cut(s) 579, 809, 878
BstMBI GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
BstNI CCWGG 2 cut(s) 701, 867
BstNSI RCATGY 2 cut(s) 737, 1030
BstPI GGTNACC 1 cut(s) 1160
BstSCI CCNGG 2 cut(s) 699, 865
BstSFI CTRYAG 2 cut(s) 137, 600
BstSLI GKGCMC 2 cut(s) 58, 559
BstUI CGCG 1 cut(s) 1231
BstV1I GCAGC 9 cut(s) 151, 394, 694, 695, 772, 803, 806, 855, 1248
BstX2I RGATCY 1 cut(s) 462
BstXI CCANNNNNNTGG 3 cut(s) 280, 1247, 1253
BstYI RGATCY 1 cut(s) 462
BsuRI GGCC 2 cut(s) 535, 870
BtgI CCRYGG 1 cut(s) 1246
BtrI CACGTC 1 cut(s) 1131
BtsCI GGATG 1 cut(s) 1162
BtsIMutI CAGTG 3 cut(s) 450, 536, 1045
Cac8I GCNNGC 3 cut(s) 388, 984, 1099
CfoI GCGC 1 cut(s) 1231
Cfr10I RCCGGY 1 cut(s) 870
Cfr13I GGNCC 3 cut(s) 223, 972, 1124
CseI GACGC 1 cut(s) 849
Csp6I GTAC 1 cut(s) 403
CviAII CATG 8 cut(s) 13, 193, 201, 734, 976, 1027, 1210, 1247
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 7 cut(s) 318, 442, 608, 676, 687, 711, 1019
DpnI GATC 7 cut(s) 63, 128, 357, 464, 497, 953, 1268
DpnII GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
EaeI YGGCCR 1 cut(s) 533
EciI GGCGGA 1 cut(s) 1249
Eco130I CCWWGG 2 cut(s) 276, 1246
Eco31I GGTCTC 1 cut(s) 878
Eco47I GGWCC 3 cut(s) 223, 972, 1124
Eco57I CTGAAG 2 cut(s) 432, 585
Eco91I GGTNACC 1 cut(s) 1160
EcoO65I GGTNACC 1 cut(s) 1160
EcoRII CCWGG 2 cut(s) 699, 865
EcoT14I CCWWGG 2 cut(s) 276, 1246
EcoT22I ATGCAT 1 cut(s) 1028
ErhI CCWWGG 2 cut(s) 276, 1246
FaeI CATG 8 cut(s) 16, 196, 204, 737, 979, 1030, 1213, 1250
FaqI GGGAC 1 cut(s) 297
FatI CATG 8 cut(s) 12, 192, 200, 733, 975, 1026, 1209, 1246
FbaI TGATCA 1 cut(s) 126
FokI GGATG 1 cut(s) 1169
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 1230
GsaI CCCAGC 2 cut(s) 89, 621
GsuI CTGGAG 1 cut(s) 1199
HaeIII GGCC 2 cut(s) 535, 870
HapII CCGG 3 cut(s) 353, 512, 871
HgaI GACGC 1 cut(s) 849
HhaI GCGC 1 cut(s) 1231
Hin1II CATG 8 cut(s) 16, 196, 204, 737, 979, 1030, 1213, 1250
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 9 cut(s) 17, 262, 326, 440, 606, 644, 1004, 1057, 1136
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 3 cut(s) 353, 512, 871
HphI GGTGA 8 cut(s) 101, 461, 653, 865, 895, 1172, 1195, 1261
Hpy166II GTNNAC 4 cut(s) 6, 56, 424, 557
Hpy188I TCNGA 8 cut(s) 111, 319, 467, 611, 829, 941, 1020, 1128
Hpy188III TCNNGA 7 cut(s) 70, 130, 353, 512, 916, 1051, 1066
Hpy8I GTNNAC 4 cut(s) 6, 56, 424, 557
Hpy99I CGWCG 2 cut(s) 843, 1132
HpyAV CCTTC 2 cut(s) 224, 953
HpyCH4III ACNGT 4 cut(s) 305, 853, 1040, 1117
HpyCH4IV ACGT 5 cut(s) 162, 208, 633, 1130, 1223
HpyF3I CTNAG 7 cut(s) 318, 442, 608, 676, 687, 711, 1019
HpySE526I ACGT 5 cut(s) 162, 208, 633, 1130, 1223
Hsp92II CATG 8 cut(s) 16, 196, 204, 737, 979, 1030, 1213, 1250
HspAI GCGC 1 cut(s) 1229
Kpn2I TCCGGA 2 cut(s) 352, 511
Ksp22I TGATCA 1 cut(s) 126
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
LmnI GCTCC 4 cut(s) 514, 585, 835, 1262
Lsp1109I GCAGC 9 cut(s) 151, 394, 694, 695, 772, 803, 806, 855, 1248
LweI GCATC 4 cut(s) 510, 969, 1013, 1056
MaeI CTAG 1 cut(s) 387
MaeII ACGT 5 cut(s) 162, 208, 633, 1130, 1223
MaeIII GTNAC 5 cut(s) 70, 209, 901, 1160, 1167
MalI GATC 7 cut(s) 63, 128, 357, 464, 497, 953, 1268
MbiI CCGCTC 2 cut(s) 580, 593
MboI GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
MboII GAAGA 2 cut(s) 578, 1066
MfeI CAATTG 1 cut(s) 529
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 3 cut(s) 58, 559, 1099
MlsI TGGCCA 1 cut(s) 535
MluCI AATT 4 cut(s) 529, 652, 1189, 1282
MluNI TGGCCA 1 cut(s) 535
MlyI GAGTC 5 cut(s) 26, 335, 434, 600, 653
MmeI TCCRAC 4 cut(s) 250, 720, 1134, 1151
Mox20I TGGCCA 1 cut(s) 535
Mph1103I ATGCAT 1 cut(s) 1028
MroI TCCGGA 2 cut(s) 352, 511
MscI TGGCCA 1 cut(s) 535
MseI TTAA 2 cut(s) 423, 1285
MslI CAYNNNNRTG 4 cut(s) 11, 122, 278, 1245
Msp20I TGGCCA 1 cut(s) 535
MspI CCGG 3 cut(s) 353, 512, 871
MspR9I CCNGG 2 cut(s) 701, 867
MunI CAATTG 1 cut(s) 529
MvaI CCWGG 2 cut(s) 701, 867
MvnI CGCG 1 cut(s) 1231
NcoI CCATGG 1 cut(s) 1246
NdeII GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
NheI GCTAGC 1 cut(s) 386
NlaIII CATG 8 cut(s) 16, 196, 204, 737, 979, 1030, 1213, 1250
NlaIV GGNNCC 4 cut(s) 476, 544, 973, 1258
NmeAIII GCCGAG 1 cut(s) 886
NmuCI GTSAC 3 cut(s) 70, 901, 1160
NsiI ATGCAT 1 cut(s) 1028
NspI RCATGY 2 cut(s) 737, 1030
OliI CACNNNNGTG 1 cut(s) 278
PfeI GAWTC 4 cut(s) 262, 1004, 1057, 1136
PfoI TCCNGGA 1 cut(s) 699
PleI GAGTC 5 cut(s) 25, 334, 434, 600, 652
PpsI GAGTC 5 cut(s) 25, 334, 434, 600, 652
Ppu21I YACGTR 2 cut(s) 163, 634
Psp6I CCWGG 2 cut(s) 699, 865
PspEI GGTNACC 1 cut(s) 1160
PspFI CCCAGC 2 cut(s) 85, 617
PspGI CCWGG 2 cut(s) 699, 865
PspN4I GGNNCC 4 cut(s) 476, 544, 973, 1258
PspPI GGNCC 3 cut(s) 223, 972, 1124
PstI CTGCAG 2 cut(s) 141, 604
PsuI RGATCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
RseI CAYNNNNRTG 4 cut(s) 11, 122, 278, 1245
SaqAI TTAA 2 cut(s) 423, 1285
Sau3AI GATC 7 cut(s) 61, 126, 355, 462, 495, 951, 1266
Sau96I GGNCC 3 cut(s) 223, 972, 1124
SchI GAGTC 5 cut(s) 26, 335, 434, 600, 653
ScrFI CCNGG 2 cut(s) 701, 867
SduI GDGCHC 3 cut(s) 58, 559, 1099
SfaNI GCATC 4 cut(s) 510, 969, 1013, 1056
SfcI CTRYAG 2 cut(s) 137, 600
SinI GGWCC 3 cut(s) 223, 972, 1124
SmiMI CAYNNNNRTG 4 cut(s) 11, 122, 278, 1245
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 4 cut(s) 529, 652, 1189, 1282
SsiI CCGC 8 cut(s) 499, 578, 591, 692, 750, 788, 888, 1260
SspI AATATT 1 cut(s) 101
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 699, 865
StyI CCWWGG 2 cut(s) 276, 1246
TaaI ACNGT 4 cut(s) 305, 853, 1040, 1117
TaiI ACGT 5 cut(s) 165, 211, 636, 1133, 1226
TaqI TCGA 4 cut(s) 122, 300, 1050, 1112
TasI AATT 4 cut(s) 529, 652, 1189, 1282
TauI GCSGC 2 cut(s) 593, 791
TfiI GAWTC 4 cut(s) 262, 1004, 1057, 1136
Tru1I TTAA 2 cut(s) 423, 1285
Tru9I TTAA 2 cut(s) 423, 1285
TscAI CASTG 3 cut(s) 450, 543, 1045
TseFI GTSAC 3 cut(s) 70, 901, 1160
TseI GCWGC 9 cut(s) 139, 407, 683, 707, 785, 791, 794, 843, 1236
Tsp45I GTSAC 3 cut(s) 70, 901, 1160
TspDTI ATGAA 3 cut(s) 94, 111, 615
TspRI CASTG 3 cut(s) 450, 543, 1045
VneI GTGCAC 2 cut(s) 54, 555
VpaK11BI GGWCC 3 cut(s) 223, 972, 1124
XceI RCATGY 2 cut(s) 737, 1030
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 1 cut(s) 387
Zsp2I ATGCAT 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.