Rh4BG316700

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000734
Physical Location & Seq
Reverse (-)
48414541 .. 48415809
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG316700.1

Sequence Viewer

Length: 1269 bp
ATGGATGTAAACAGCGTTGAACCCCGACTAAGTGCATCAGATAAGGTCATGAGCAATTACGGGCTGAGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACGATCAAAAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCAAGGATCAAGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATGCTAATCCTTGTAAAGCTTGCTCTCACATCAAGTATGCTGCCGCAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGATGAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAAGCTCCTCCAAGCCGCTCAAACTAAAGGACTCAAAGTTGTTGGGGTATCATTTCATATAGGGAGTAAGTCCCACAATTATCAAGCATATAAAACAGCAATACAGGCAGCTAAGGCGGTTTTTCAGGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCGATGCATTGTGCTTTGTAGCTGCGGCAACAGCCGTGAAAACTGCCGTGGACAAGTACTTTTCAAAGGAGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATGTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTAAGTGGTAAAGGTGTCGGTGGTGATCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGTTGGTGTTTCAGAATATGGGTGCTTATACGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCGCAGCCAAGATCACCTACCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

422

Amino Acids

46.44

Weight (kDa)

7.14

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 46 - 399 3.9e-15 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 53 - 286 1.7e-68 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 495
Acc36I ACCTGC 1 cut(s) 495
AccBSI CCGCTC 1 cut(s) 569
AccII CGCG 1 cut(s) 960
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
AclWI GGATC 6 cut(s) 246, 274, 433, 935, 972, 1112
AcoI YGGCCR 2 cut(s) 509, 834
AfaI GTAC 4 cut(s) 70, 527, 797, 970
AfeI AGCGCT 1 cut(s) 975
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 1112
AgsI TTSAA 5 cut(s) 20, 302, 718, 804, 983
AjiI CACGTC 1 cut(s) 1113
AjnI CCWGG 2 cut(s) 176, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 1160, 1192
AluBI AGCT 6 cut(s) 362, 485, 556, 662, 761, 1150
AluI AGCT 6 cut(s) 362, 485, 556, 662, 761, 1150
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 854
AlwI GGATC 6 cut(s) 246, 274, 433, 935, 972, 1112
Aor13HI TCCGGA 1 cut(s) 487
Aor51HI AGCGCT 1 cut(s) 975
AoxI GGCC 2 cut(s) 509, 834
ApeKI GCWGC 4 cut(s) 383, 659, 761, 1241
AspLEI GCGC 3 cut(s) 960, 976, 1241
AspS9I GGNCC 2 cut(s) 199, 1106
AsuC2I CCSGG 3 cut(s) 236, 455, 843
AsuHPI GGTGA 4 cut(s) 1088, 1136, 1177, 1243
AvaII GGWCC 2 cut(s) 199, 1106
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 370, 671, 748, 1253
BccI CCATC 2 cut(s) 190, 826
BceAI ACGGC 3 cut(s) 758, 770, 879
BciT130I CCWGG 2 cut(s) 178, 1044
BcnI CCSGG 3 cut(s) 236, 455, 843
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 2 cut(s) 86, 977
BfmI CTRYAG 1 cut(s) 1213
BfoI RGCGCY 1 cut(s) 977
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 7 cut(s) 384, 387, 567, 660, 762, 765, 1242
BlsI GCNGC 7 cut(s) 385, 388, 568, 661, 763, 766, 1243
BmcAI AGTACT 2 cut(s) 70, 797
Bme1390I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
Bme18I GGWCC 2 cut(s) 199, 1106
BmgBI CACGTC 1 cut(s) 1113
BmgT120I GGNCC 2 cut(s) 199, 1106
BmiI GGNNCC 2 cut(s) 941, 949
BmrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
BmsI GCATC 4 cut(s) 44, 486, 733, 945
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 2 cut(s) 552, 663
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 3 cut(s) 236, 455, 843
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 4 cut(s) 252, 786, 943, 1042
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 929
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 2 cut(s) 178, 1044
BseDI CCNNGG 4 cut(s) 252, 786, 943, 1042
BseGI GGATG 2 cut(s) 10, 1208
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 56, 285
BseNI ACTGG 1 cut(s) 929
BseRI GAGGAG 3 cut(s) 233, 548, 824
BseXI GCAGC 4 cut(s) 370, 671, 748, 1253
Bsh1236I CGCG 1 cut(s) 960
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 2 cut(s) 511, 836
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 4 cut(s) 236, 455, 488, 843
BslFI GGGAC 1 cut(s) 607
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 607
BsnI GGCC 2 cut(s) 511, 836
Bsp1286I GDGCHC 2 cut(s) 535, 843
Bsp13I TCCGGA 1 cut(s) 487
Bsp19I CCATGG 1 cut(s) 943
BspACI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
BspANI GGCC 2 cut(s) 511, 836
BspCNI CTCAG 2 cut(s) 57, 286
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 2 cut(s) 941, 949
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 6 cut(s) 246, 274, 433, 935, 972, 1112
BspQI GCTCTTC 1 cut(s) 540
BsrBI CCGCTC 1 cut(s) 569
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 4 cut(s) 252, 786, 943, 1042
BssT1I CCWWGG 2 cut(s) 252, 943
Bst2UI CCWGG 2 cut(s) 178, 1044
Bst4CI ACNGT 4 cut(s) 281, 530, 1019, 1091
Bst6I CTCTTC 1 cut(s) 540
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 364, 698, 876
BstDEI CTNAG 5 cut(s) 29, 65, 294, 552, 663
BstDSI CCRYGG 2 cut(s) 786, 943
BstEII GGTNACC 1 cut(s) 1142
BstF5I GGATG 2 cut(s) 10, 1208
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 3 cut(s) 960, 976, 1241
BstMAI GTCTC 1 cut(s) 854
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
BstNI CCWGG 2 cut(s) 178, 1044
BstNSI RCATGY 3 cut(s) 700, 713, 1009
BstPI GGTNACC 1 cut(s) 1142
BstSCI CCNGG 5 cut(s) 176, 234, 453, 841, 1042
BstSFI CTRYAG 1 cut(s) 1213
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 4 cut(s) 370, 671, 748, 1253
BstX2I RGATCY 2 cut(s) 238, 438
BstYI RGATCY 2 cut(s) 238, 438
BsuRI GGCC 2 cut(s) 511, 836
BtgI CCRYGG 2 cut(s) 786, 943
BtrI CACGTC 1 cut(s) 1113
BtsCI GGATG 2 cut(s) 10, 1208
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 364, 698, 876
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 3 cut(s) 960, 976, 1241
Cfr13I GGNCC 2 cut(s) 199, 1106
Csp6I GTAC 4 cut(s) 69, 526, 796, 969
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 9 cut(s) 49, 74, 169, 697, 706, 710, 944, 952, 1006
CviQI GTAC 4 cut(s) 69, 526, 796, 969
DdeI CTNAG 5 cut(s) 29, 65, 294, 552, 663
EaeI YGGCCR 2 cut(s) 509, 834
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 698
Eco130I CCWWGG 2 cut(s) 252, 943
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 2 cut(s) 199, 1106
Eco47III AGCGCT 1 cut(s) 975
Eco91I GGTNACC 1 cut(s) 1142
EcoO65I GGTNACC 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 176, 1042
EcoT14I CCWWGG 2 cut(s) 252, 943
EcoT22I ATGCAT 3 cut(s) 711, 748, 1007
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 2 cut(s) 252, 943
Esp3I CGTCTC 1 cut(s) 854
FaeI CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
FaqI GGGAC 1 cut(s) 607
FatI CATG 9 cut(s) 48, 73, 168, 696, 705, 709, 943, 951, 1005
Fnu4HI GCNGC 7 cut(s) 384, 387, 567, 660, 762, 765, 1242
FokI GGATG 2 cut(s) 17, 1195
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 7 cut(s) 384, 387, 567, 660, 762, 765, 1242
FspBI CTAG 2 cut(s) 86, 977
GlaI GCGC 3 cut(s) 959, 975, 1240
GluI GCNGC 7 cut(s) 384, 387, 567, 660, 762, 765, 1242
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 2 cut(s) 511, 836
HapII CCGG 4 cut(s) 236, 455, 488, 843
HhaI GCGC 3 cut(s) 960, 976, 1241
Hin1II CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
Hin6I GCGC 3 cut(s) 958, 974, 1239
HinP1I GCGC 3 cut(s) 958, 974, 1239
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 4 cut(s) 302, 416, 582, 983
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 4 cut(s) 236, 455, 488, 843
HphI GGTGA 4 cut(s) 1088, 1136, 1177, 1243
Hpy166II GTNNAC 3 cut(s) 10, 400, 790
Hpy188I TCNGA 9 cut(s) 40, 195, 295, 443, 742, 917, 999, 1110, 1188
Hpy188III TCNNGA 6 cut(s) 49, 74, 329, 488, 539, 677
Hpy8I GTNNAC 3 cut(s) 10, 400, 790
Hpy99I CGWCG 2 cut(s) 106, 1114
HpyAV CCTTC 3 cut(s) 200, 217, 929
HpyCH4III ACNGT 4 cut(s) 281, 530, 1019, 1091
HpyCH4IV ACGT 4 cut(s) 138, 184, 1112, 1205
HpyCH4V TGCA 9 cut(s) 35, 225, 284, 451, 696, 709, 746, 990, 1005
HpyF10VI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
HpyF3I CTNAG 5 cut(s) 29, 65, 294, 552, 663
HpySE526I ACGT 4 cut(s) 138, 184, 1112, 1205
Hsp92II CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
HspAI GCGC 3 cut(s) 958, 974, 1239
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 400
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 5 cut(s) 490, 501, 561, 811, 953
Lsp1109I GCAGC 4 cut(s) 370, 671, 748, 1253
LweI GCATC 4 cut(s) 44, 486, 733, 945
MaeI CTAG 2 cut(s) 86, 977
MaeII ACGT 4 cut(s) 138, 184, 1112, 1205
MaeIII GTNAC 3 cut(s) 185, 1022, 1142
MbiI CCGCTC 1 cut(s) 569
MboII GAAGA 3 cut(s) 527, 554, 1048
MflI RGATCY 2 cut(s) 238, 438
MhlI GDGCHC 2 cut(s) 535, 843
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 5 cut(s) 55, 446, 628, 1157, 1264
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 226, 1133
Mox20I TGGCCA 1 cut(s) 511
Mph1103I ATGCAT 3 cut(s) 711, 748, 1007
MroI TCCGGA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 511
MseI TTAA 6 cut(s) 162, 219, 399, 824, 1227, 1267
MslI CAYNNNNRTG 1 cut(s) 710
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 4 cut(s) 236, 455, 488, 843
MspR9I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
MvaI CCWGG 2 cut(s) 178, 1044
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 6 cut(s) 656, 665, 697, 706, 770, 863
NciI CCSGG 3 cut(s) 236, 455, 843
NcoI CCATGG 1 cut(s) 943
NlaIII CATG 9 cut(s) 52, 77, 172, 700, 709, 713, 947, 955, 1009
NlaIV GGNNCC 2 cut(s) 941, 949
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 1022, 1142
NsiI ATGCAT 3 cut(s) 711, 748, 1007
NspI RCATGY 3 cut(s) 700, 713, 1009
PaeI GCATGC 1 cut(s) 700
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 540
PfeI GAWTC 3 cut(s) 302, 416, 983
PflFI GACNNNGTC 1 cut(s) 1130
PkrI GCNGC 7 cut(s) 385, 388, 568, 661, 763, 766, 1243
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 176, 1042
PspEI GGTNACC 1 cut(s) 1142
PspGI CCWGG 2 cut(s) 176, 1042
PspN4I GGNNCC 2 cut(s) 941, 949
PspPI GGNCC 2 cut(s) 199, 1106
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PsuI RGATCY 2 cut(s) 238, 438
PsyI GACNNNGTC 1 cut(s) 1130
RsaI GTAC 4 cut(s) 70, 527, 797, 970
RsaNI GTAC 4 cut(s) 69, 526, 796, 969
RseI CAYNNNNRTG 1 cut(s) 710
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 6 cut(s) 162, 219, 399, 824, 1227, 1267
SatI GCNGC 7 cut(s) 384, 387, 567, 660, 762, 765, 1242
Sau96I GGNCC 2 cut(s) 199, 1106
ScaI AGTACT 2 cut(s) 70, 797
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
SduI GDGCHC 2 cut(s) 535, 843
SfaNI GCATC 4 cut(s) 44, 486, 733, 945
SfcI CTRYAG 1 cut(s) 1213
SinI GGWCC 2 cut(s) 199, 1106
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SphI GCATGC 1 cut(s) 700
Sse9I AATT 5 cut(s) 55, 446, 628, 1157, 1264
SsiI CCGC 8 cut(s) 387, 475, 567, 668, 683, 726, 764, 857
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 977
StyD4I CCNGG 5 cut(s) 176, 234, 453, 841, 1042
StyI CCWWGG 2 cut(s) 252, 943
TaaI ACNGT 4 cut(s) 281, 530, 1019, 1091
TaiI ACGT 4 cut(s) 141, 187, 1115, 1208
TaqI TCGA 3 cut(s) 101, 276, 1094
TaqII GACCGA 1 cut(s) 279
TasI AATT 5 cut(s) 55, 446, 628, 1157, 1264
TatI WGTACW 2 cut(s) 68, 795
TauI GCSGC 3 cut(s) 389, 569, 767
TfiI GAWTC 3 cut(s) 302, 416, 983
Tru1I TTAA 6 cut(s) 162, 219, 399, 824, 1227, 1267
Tru9I TTAA 6 cut(s) 162, 219, 399, 824, 1227, 1267
TseFI GTSAC 2 cut(s) 1022, 1142
TseI GCWGC 4 cut(s) 383, 659, 761, 1241
Tsp45I GTSAC 2 cut(s) 1022, 1142
TspDTI ATGAA 3 cut(s) 90, 422, 596
Tth111I GACNNNGTC 1 cut(s) 1130
VpaK11BI GGWCC 2 cut(s) 199, 1106
XceI RCATGY 3 cut(s) 700, 713, 1009
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 958
XspI CTAG 2 cut(s) 86, 977
ZrmI AGTACT 2 cut(s) 70, 797
Zsp2I ATGCAT 3 cut(s) 711, 748, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.